NO06G00740, NO06G00740 (gene) Nannochloropsis oceanica

Overview
NameNO06G00740
Unique NameNO06G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1010
Alignment locationchr6:261961..262970 +

Link to JBrowse

Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans fkbp-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:261961..262970 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp
Homology
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: EWM26129.1 (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 115.2 bits (287), Expect = 1.800e-22
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 0 
Query:    7 VATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVFK 80
            VA SLSEATRAGKRLREL+L SS DLRCVNLMCEKVG+PCICRLAR LS TP LERL L+ N L  LPEEVFK
Sbjct:   15 VAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFK 87
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BLAST of NO06G00740 vs. NCBI_GenBank
Match: XP_009525062.1 (hypothetical protein PHYSODRAFT_496570 [Phytophthora sojae] >EGZ22345.1 hypothetical protein PHYSODRAFT_496570 [Phytophthora sojae])

HSP 1 Score: 80.1 bits (196), Expect = 6.400e-12
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:    2 STTKFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVF 79
            S+T  +ATSL +  R+G R+ EL L  S DL C  LMCE VGD C CRLA  L   P L RLDL+ N L+ALP+ VF
Sbjct:   22 SSTCVLATSLRDIARSGARVEELELSKSGDLICRQLMCEHVGDACACRLALALERVPRLRRLDLSANQLRALPDAVF 98
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BLAST of NO06G00740 vs. NCBI_GenBank
Match: CCI49145.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 79.7 bits (195), Expect = 8.400e-12
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:    7 VATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVFKL 81
            VATS  +A ++G   REL+L  S DL C NLMCE++G  C CRLA +L+  P L  LDL+ N L+ +P+ VF L
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSL 78
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: CCA20920.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 78.6 bits (192), Expect = 1.900e-11
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 0 
Query:    7 VATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVFKL 81
            VATS  +  + G  +++L+L+ S DL C NLMCEK+G  C CRLA +L+  P L  LDL+ N L+ +PE VF L
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGL 78
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: XP_008609436.1 (hypothetical protein SDRG_05498 [Saprolegnia diclina VS20] >EQC37274.1 hypothetical protein SDRG_05498 [Saprolegnia diclina VS20])

HSP 1 Score: 78.2 bits (191), Expect = 2.400e-11
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 0 
Query:    7 VATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVF 79
            +A SL +A      +R+LVLR S DL C+NLMCE+VG+ C+C+L+ VL   P LE LD+++N LK+LP  +F
Sbjct:    2 IAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIF 73
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: XP_012199901.1 (hypothetical protein SPRG_05936 [Saprolegnia parasitica CBS 223.65] >KDO29399.1 hypothetical protein SPRG_05936 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 76.6 bits (187), Expect = 7.100e-11
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:    5 KFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVF 79
            + +A SL +A      +R+LVLR S DL C+NLMCE+VG+ C+C+L+ VL   P LE LD+++N L +LP  +F
Sbjct:  381 RMIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLMSLPPAIF 454
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: ETK82933.1 (hypothetical protein L915_11777 [Phytophthora parasitica] >ETL36312.1 hypothetical protein L916_11702 [Phytophthora parasitica] >ETP12672.1 hypothetical protein F441_12030 [Phytophthora parasitica CJ01A1] >KUF93099.1 Glucanase inhibitor protein 1 [Phytophthora nicotianae])

HSP 1 Score: 75.5 bits (184), Expect = 1.600e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0 
Query:    2 STTKFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVF 79
            ++T   AT L +  RAG R+ +L L  S DL C  LMCE VGD C CRLA  L   P L+RLDL+ N L+ALP+ V+
Sbjct:   21 ASTALSATCLRDIARAGARVVDLQLPKSGDLVCRQLMCEHVGDACACRLALALERVPRLQRLDLSNNQLRALPDAVY 97
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: XP_008908332.1 (hypothetical protein PPTG_13708 [Phytophthora parasitica INRA-310] >ETI42897.1 hypothetical protein F443_12064 [Phytophthora parasitica P1569] >ETL89522.1 hypothetical protein L917_11566 [Phytophthora parasitica] >ETM42809.1 hypothetical protein L914_11612 [Phytophthora parasitica] >ETN06363.1 hypothetical protein PPTG_13708 [Phytophthora parasitica INRA-310] >ETO71530.1 hypothetical protein F444_12160 [Phytophthora parasitica P1976] >ETP40746.1 hypothetical protein F442_11975 [Phytophthora parasitica P10297] >KUF85853.1 Leucine-rich repeat protein SHOC-2 [Phytophthora nicotianae])

HSP 1 Score: 75.1 bits (183), Expect = 2.100e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 0 
Query:    2 STTKFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVF 79
            ++T   AT L +  RAG R+ +L L  S DL C  LMCE VGD C CRLA  L   P L+RLDL+ N L+ALP+ V+
Sbjct:   21 ASTAVSATCLRDIARAGARVVDLQLPKSGDLVCRQLMCEHVGDACACRLALALERVPRLQRLDLSNNQLRALPDAVY 97
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: OQS01902.1 (hypothetical protein THRCLA_21571 [Thraustotheca clavata])

HSP 1 Score: 73.6 bits (179), Expect = 6.000e-10
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 0 
Query:    7 VATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVFKL 81
            +A SL +A      +++LVLR S DL C NLMCE+VG+ C+C+L+ VL   P LE LD+++N L+ LP  +F+L
Sbjct:    2 IAKSLRDAATHTSSVQKLVLRKSQDLVCRNLMCERVGEACVCKLSLVLERLPQLEELDVSENKLQMLPPSIFQL 75
[Close]
BLAST of NO06G00740 vs. NCBI_GenBank
Match: OWZ16164.1 (hypothetical protein PHMEG_00010082 [Phytophthora megakarya])

HSP 1 Score: 73.2 bits (178), Expect = 7.900e-10
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:    2 STTKFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRLARVLSLTPNLERLDLAKNGLKALPEEVFKL 81
            ++   +ATSL +  R+G R+ EL L  S DL C  LMCE VGD C CRLA  L   P L+ LDL+ N L+ LP+ VF L
Sbjct:   21 ASVSVLATSLRDIARSGARVVELELPQSGDLVCRQLMCEHVGDACACRLALALERVPRLQLLDLSANQLRDLPDAVFAL 99
The following BLAST results are available for this feature:
BLAST of NO06G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
EWM26129.11.800e-2280.82peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
XP_009525062.16.400e-1254.55hypothetical protein PHYSODRAFT_496570 [Phytophtho... [more]
CCI49145.18.400e-1250.00unnamed protein product [Albugo candida][more]
CCA20920.11.900e-1148.65conserved hypothetical protein [Albugo laibachii N... [more]
XP_008609436.12.400e-1150.00hypothetical protein SDRG_05498 [Saprolegnia dicli... [more]
XP_012199901.17.100e-1147.30hypothetical protein SPRG_05936 [Saprolegnia paras... [more]
ETK82933.11.600e-1050.65hypothetical protein L915_11777 [Phytophthora para... [more]
XP_008908332.12.100e-1050.65hypothetical protein PPTG_13708 [Phytophthora para... [more]
OQS01902.16.000e-1047.30hypothetical protein THRCLA_21571 [Thraustotheca c... [more]
OWZ16164.17.900e-1049.37hypothetical protein PHMEG_00010082 [Phytophthora ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000377NSK000377Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00740.1NO06G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g50gene4411Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00740.1NO06G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00740 ID=NO06G00740|Name=NO06G00740|organism=Nannochloropsis oceanica|type=gene|length=1010bp
GGTATCTGTAGTTGTGTGCGGTGGGAGGGGTGCGTAAGATTTTGTGTCTG
AGTGCCGGTGGTGTGAGAACGGCAGAAAGGCGAAGGCAGGGAGCAGAGAG
TGAGGGAGGCGAAAAGGGCCTCGGTTTGCTCGCAGCCATCTAATGCATCC
CTGCCTTCCCACACCGGCTGTCCATGATACGTTTTCCTCACCACAACGAC
CAGGTACGTGCAAGGATTTGCAGCTGGTTGTTACGTGTGCTGTACTGCCA
TCATGGCCCTGTGCTTCTCTTTCTTGTCGCTGCCCACCGTCCACACAAGT
ATGCTTGGGGGAAATAGTTGACGTTTTGCACCTTCATCATCATCACCACT
TCATTTTTTCTGTGCATGGAGTCCTGCTACAATACATGCCCACGCTCAAT
TTAACAGGCTGGTCATCTGTGCCTTGCGATGCGCGTAAGATAACGCTAGA
ATGTCGACGACCAAGgtaaagtaaccatatttctgcccctctcatatcca
cttctcccgtctccttcaccagcctcgacacacccctactatgagcagTT
CGTTGCTACGAGTCTGTCAGAGGCCACGCGGGCGGGGAAGCGGTTGCGTG
AACTGGTGCTGCGTTCGAGTGCGGACCTGAGGTGTGTGAACCTCATGTGC
GAAAAGGTGGGGGACCCATGCATCTGTCGCCTGGCCCGGGTCCTCTCCCT
TACGCCCAACCTGGAGCGCCTCGACCTAGCCAAGAACGGGTTGAAGGCAT
TGCCAGAGGAGGTATTCAAGCTGCGAAATCTTCGAAATCTTGACCTGTCA
CACAATGTACTGACAGAACTGCCGCCGTCCGTCCTCCAACTCTCCCATTT
GCGCGTGCTGGACGTGCAAGGGAACCCGTTGATGGAGGAGGGTACGGACA
ACGACAACGACGACCACGAGGCCGAGACATTGAAGCGCGTGCGGCACTTC
ATTCGGGAGAGAATACCAACGAGGAGTATGTAGTGCAACTTCAACAAAGT
GAATACTTTT
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protein sequence of NO06G00740.1

>NO06G00740.1-protein ID=NO06G00740.1-protein|Name=NO06G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MSTTKFVATSLSEATRAGKRLRELVLRSSADLRCVNLMCEKVGDPCICRL
ARVLSLTPNLERLDLAKNGLKALPEEVFKLRNLRNLDLSHNVLTELPPSV
LQLSHLRVLDVQGNPLMEEGTDNDNDDHEAETLKRVRHFIRERIPTRSM*
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Synonyms
Publications