NO06G00730, NO06G00730 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G00730 vs. NCBI_GenBank
Match: EWM26134.1 (ribosomal protein l12 [Nannochloropsis gaditana]) HSP 1 Score: 308.5 bits (789), Expect = 1.200e-80 Identity = 161/166 (96.99%), Postives = 164/166 (98.80%), Query Frame = 0 Query: 1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 M PPPAA GEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTL+GTVKEILGTANSVGCTVQGEAPTEIQ+KIDSGDITIP+E Sbjct: 1 MGPPPAAPGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLSGTVKEILGTANSVGCTVQGEAPTEIQSKIDSGDITIPDE 166
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_002182088.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46628.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 241.9 bits (616), Expect = 1.400e-60 Identity = 120/166 (72.29%), Postives = 143/166 (86.14%), Query Frame = 0 Query: 1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 M PPP + ++K V++R VGGE+GSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH GNLT+D II IAR MR RSMAR L GTVKEILGTANS+GC+V GE+P +IQA ID G+I IPEE Sbjct: 1 MGPPP--SDDVKIVIMRTVGGEIGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHDGNLTLDQIIDIARQMRERSMARKLKGTVKEILGTANSIGCSVNGESPRDIQASIDDGEIEIPEE 164
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_008898524.1 (hypothetical protein PPTG_06371 [Phytophthora parasitica INRA-310] >ETI31368.1 hypothetical protein F443_21642 [Phytophthora parasitica P1569] >ETK71747.1 hypothetical protein L915_21048 [Phytophthora parasitica] >ETL25185.1 hypothetical protein L916_20923 [Phytophthora parasitica] >ETL78397.1 hypothetical protein L917_20782 [Phytophthora parasitica] >ETM31679.1 hypothetical protein L914_20790 [Phytophthora parasitica] >ETN16169.1 hypothetical protein PPTG_06371 [Phytophthora parasitica INRA-310] >ETO60070.1 hypothetical protein F444_21681 [Phytophthora parasitica P1976] >ETP01191.1 hypothetical protein F441_21534 [Phytophthora parasitica CJ01A1] >ETP29326.1 hypothetical protein F442_21498 [Phytophthora parasitica P10297] >KUF88921.1 60S ribosomal protein L12 [Phytophthora nicotianae] >KUF98029.1 Asparagine synthetase domain-containing protein 1 [Phytophthora nicotianae] >POM65889.1 60S ribosomal protein L12 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60 Identity = 125/164 (76.22%), Postives = 140/164 (85.37%), Query Frame = 0 Query: 2 APPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPE 166 APPP AGE K VVLR VGGEV AS LAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATV+L+PSASS++++ LKEPPRDRKK KNIKH GNL++D +IS+AR MR RSMARTLAGTVKEILGTA+S+GCTV GEAPTEIQ I G++ IPE Sbjct: 3 APPP--AGEEKVVVLRTVGGEVAPASALAPKVGPLGLSPKKIGEDICKATKDWKGLNVTVKLTIVNRQATVTLIPSASSLLVKELKEPPRDRKKVKNIKHDGNLSLDQVISVARIMRERSMARTLAGTVKEILGTASSLGCTVNGEAPTEIQRLITEGELDIPE 164
BLAST of NO06G00730 vs. NCBI_GenBank
Match: GAX28764.1 (large subunit ribosomal protein L12e [Fistulifera solaris] >GAX18195.1 large subunit ribosomal protein L12e [Fistulifera solaris]) HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60 Identity = 118/166 (71.08%), Postives = 144/166 (86.75%), Query Frame = 0 Query: 1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 M PPP + ++K V++R VGGEVGSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PS+SS++++AL EP RDRKK KN+KH+GNLT+D +I IAR MR RSMAR L+GTVKEILGT NS+GCTV GE+P +IQA ID G++ IPE+ Sbjct: 1 MGPPP--SDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSSSSLVMKALNEPVRDRKKVKNVKHNGNLTLDQVIDIARQMRERSMARKLSGTVKEILGTCNSIGCTVNGESPRDIQAGIDDGEVEIPEK 164
BLAST of NO06G00730 vs. NCBI_GenBank
Match: OWZ17167.1 (60S ribosomal protein L12 [Phytophthora megakarya]) HSP 1 Score: 240.4 bits (612), Expect = 4.100e-60 Identity = 125/164 (76.22%), Postives = 140/164 (85.37%), Query Frame = 0 Query: 2 APPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPE 166 APPP AGE K VVLR VGGEV AS LAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATV+L+PSASS++++ LKEPPRDRKK KNIKH GNL++D +IS+AR MR RSMARTLAGTVKEILGTA+S+GCTV GEAPTEIQ I G++ IPE Sbjct: 3 APPP--AGEEKVVVLRTVGGEVAPASALAPKVGPLGLSPKKIGEDICKATKDWKGLNVTVKLTIINRQATVTLIPSASSLLVKELKEPPRDRKKVKNIKHDGNLSLDQVISVARIMRERSMARTLAGTVKEILGTASSLGCTVNGEAPTEIQRLISEGELDIPE 164
BLAST of NO06G00730 vs. NCBI_GenBank
Match: CCI45703.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 240.0 bits (611), Expect = 5.400e-60 Identity = 124/166 (74.70%), Postives = 141/166 (84.94%), Query Frame = 0 Query: 1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 MAPPP AGE K V+LR VGGEV ASTLAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATVSL+PSASS++++ LKEPPR+RKK KNIKH GNL++D II +AR MR RS+ARTL GTVKEILGTA+S+GCTV GEAPTEIQ I G++ IPE+ Sbjct: 1 MAPPP-PAGEEKIVILRTVGGEVAPASTLAPKVGPLGLSPKKIGEDICKATQDWKGLNVTVKLTIVNRQATVSLVPSASSLLVKELKEPPRNRKKVKNIKHDGNLSLDQIIDVARVMRERSIARTLTGTVKEILGTASSLGCTVNGEAPTEIQRMISEGELDIPEQ 165
BLAST of NO06G00730 vs. NCBI_GenBank
Match: AAX62480.1 (ribosomal protein L12 [Lysiphlebus testaceipes] >AAX62481.1 ribosomal protein L12 variant 1 [Lysiphlebus testaceipes]) HSP 1 Score: 238.4 bits (607), Expect = 1.600e-59 Identity = 117/164 (71.34%), Postives = 142/164 (86.59%), Query Frame = 0 Query: 3 PPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 PP E+K V +R VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S++I+ALKEPPRDRKK+KNIKHSGN+T DD++SIARTMR RSM+R L+GTVKEILGT+ SVGCTV G AP +I IDSG+I +PEE Sbjct: 2 PPKFDPTEVKKVFMRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLVIKALKEPPRDRKKQKNIKHSGNITFDDVLSIARTMRERSMSRKLSGTVKEILGTSQSVGCTVDGRAPHDIIEDIDSGEIEVPEE 165
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_002902878.1 (60S ribosomal protein L12, putative [Phytophthora infestans T30-4] >EEY56048.1 60S ribosomal protein L12, putative [Phytophthora infestans T30-4]) HSP 1 Score: 238.0 bits (606), Expect = 2.100e-59 Identity = 124/164 (75.61%), Postives = 139/164 (84.76%), Query Frame = 0 Query: 2 APPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPE 166 APPP AGE K VVLR VGGEV AS LAPKVGPLGLSPKK+GEDI KAT DWKGL VTVKLTI NRQATV+L+PSASS++++ LKEPPRDRKK KNIKH GNL++D +IS+AR MR RSMARTLAGTVKEILGTA S+GCTV GEAPTEIQ I G++ IP+ Sbjct: 3 APPP--AGEEKVVVLRTVGGEVAPASALAPKVGPLGLSPKKIGEDICKATKDWKGLNVTVKLTIVNRQATVTLIPSASSLLVKELKEPPRDRKKVKNIKHDGNLSLDQVISVARIMRERSMARTLAGTVKEILGTAASLGCTVNGEAPTEIQRLITEGELDIPD 164
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_011335603.1 (PREDICTED: 60S ribosomal protein L12 [Ooceraea biroi] >EZA56353.1 60S ribosomal protein L12 [Ooceraea biroi]) HSP 1 Score: 237.7 bits (605), Expect = 2.700e-59 Identity = 116/164 (70.73%), Postives = 143/164 (87.20%), Query Frame = 0 Query: 3 PPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 PP EIK V LR VGGEVG+ S+LAPK+GPLGLSPKKVG+DI KAT DWKGLK+TV+LTIQNRQAT+S++PSA+S+II+ALKEPPRDRK++KNIKHSGNL+ DDI+SIAR+MRPRSM+RTLAGTVKEILGT SVGCT++G P ++ I++G++ +PEE Sbjct: 2 PPKFDPNEIKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTIQNRQATISVVPSAASLIIKALKEPPRDRKRQKNIKHSGNLSFDDIVSIARSMRPRSMSRTLAGTVKEILGTCQSVGCTIEGRPPHDLIDDINAGELEVPEE 165
BLAST of NO06G00730 vs. NCBI_GenBank
Match: XP_002287705.1 (RL12, ribosomal protein 11 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED95148.1 RL12, ribosomal protein 11 60S large ribosomal subunit [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 237.7 bits (605), Expect = 2.700e-59 Identity = 118/166 (71.08%), Postives = 143/166 (86.14%), Query Frame = 0 Query: 1 MAPPPAAAGEIKTVVLRAVGGEVGSASTLAPKVGPLGLSPKKVGEDIQKATMDWKGLKVTVKLTIQNRQATVSLLPSASSMIIRALKEPPRDRKKEKNIKHSGNLTMDDIISIARTMRPRSMARTLAGTVKEILGTANSVGCTVQGEAPTEIQAKIDSGDITIPEE 167 M PP + ++K V++R VGGEVGSAS+LAPK+GPLGLSPKKVGEDIQKATMDWKGL VTVKLT+ NRQATVS++PSASS++++AL EP RDRKK KN+ H+GN+T+D +I IAR MR RSMA+ LAGTVKEILGTANS+GCTV GE+P +IQA ID G++ IPEE Sbjct: 1 MGGPP--SDDVKIVIMRTVGGEVGSASSLAPKIGPLGLSPKKVGEDIQKATMDWKGLNVTVKLTVVNRQATVSMIPSASSLVMKALNEPVRDRKKVKNVVHNGNITLDQVIDIARQMRERSMAKKLAGTVKEILGTANSIGCTVNGESPRDIQAGIDDGEVEIPEE 164 The following BLAST results are available for this feature:
BLAST of NO06G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G00730 ID=NO06G00730|Name=NO06G00730|organism=Nannochloropsis oceanica|type=gene|length=672bpback to top protein sequence of NO06G00730.1 >NO06G00730.1-protein ID=NO06G00730.1-protein|Name=NO06G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=167bpback to top Synonyms
Publications
|