NO06G00630, NO06G00630 (gene) Nannochloropsis oceanica

Overview
NameNO06G00630
Unique NameNO06G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3061
Alignment locationchr6:234944..238004 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:234944..238004 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G00630 vs. NCBI_GenBank
Match: EWM26125.1 (hypothetical protein Naga_100014g61 [Nannochloropsis gaditana])

HSP 1 Score: 341.3 bits (874), Expect = 3.500e-90
Identity = 214/340 (62.94%), Postives = 236/340 (69.41%), Query Frame = 0 
Query:    1 MPHSKFNWRSTPAAAAQNSDGTFRFGFGDTWKLTDHTLVKPENAKGCTLDVSLEHDSKVTQLQLVCNASALQVSVVQAMNAQEFKWITQIRGTPLPNQPDMFYFRTPEELLTQKLWRLRVKFLFSSTAISAVRIQALSLSFEKLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPRA--PMLYRGPGTXXXXXXXXXXXXXXXXXXXXPCSVSVYGDGDVVSDLSEEASTRSLGSRTPDSISXXXXXXXXXXXXXXXXXXXXXXDRDAIRGLMEAIDQLISQGGSSSVLVDELLRLKERLADDLSQRATDQQLNATIARISTIIKSIV 339
            MPHSKFNWRST +  +QN DG F F FGDTWKLTD+TLVKPENAKGCTLDVSLEHDSKVTQLQ+VCNASALQVSV+QAMNAQ+FKWITQ+RGTPLPNQPD++YFRTPEELLTQKLWRLRVKFLFSST ISAVRIQ LSLSFEKLTR                                              +LYRG  +  XXXXXXXXXXXXXXX   P S SV GDGD+VSDLSEEAST SLGS    + S                      DR AIR LM AID++ISQGG+   LVDELL LKERL + L QR+++Q LNATIARIS+II+SIV
Sbjct:    1 MPHSKFNWRSTSSPPSQNPDGLFAFAFGDTWKLTDYTLVKPENAKGCTLDVSLEHDSKVTQLQVVCNASALQVSVMQAMNAQDFKWITQMRGTPLPNQPDLYYFRTPEELLTQKLWRLRVKFLFSSTDISAVRIQTLSLSFEKLTRRGSTIKGMVTSSSIRSSAGVARTGMTAVAASAGGIATSRSSHTTHSILYRG-SSMSXXXXXXXXXXXXXXXSHTPTSDSVCGDGDLVSDLSEEASTGSLGSGPKSNTS-----SASGSESREGRRTSKISDRGAIRALMSAIDKVISQGGNDGALVDELLLLKERLDNHLVQRSSEQHLNATIARISSIIQSIV 334
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BLAST of NO06G00630 vs. NCBI_GenBank
Match: EWM27581.1 (hypothetical protein Naga_100015g23 [Nannochloropsis gaditana])

HSP 1 Score: 74.3 bits (181), Expect = 8.000e-10
Identity = 43/146 (29.45%), Postives = 80/146 (54.79%), Query Frame = 0 
Query:    1 MPHSKFNWRSTPAAAAQNSDGTFRFGFGDTWKLTDHTLVKPE-NAKGCTLDVSLEHDSKVTQLQLVCNASALQVSVV--QAMNAQEFKWITQIRGTPLPNQPDMFYFRTPEELLTQ-KLWRLRVKFLFSSTAISAVRIQALSLSFE 143
            MP+ K NW S P       +   RF FG+ + + + TL + +  A+ C L V+LEH ++V +L L+C A  + V+++  ++     + ++T ++G      P +F FR    LL+  ++W+L++KFLF      ++ I+ +S+  E
Sbjct:    1 MPYLKSNWSSMPPL-----EEFGRFAFGEIFTIPEMTLTQTDPTARACYLHVALEHQARVQELDLICAAPTIVVNLMRGKSTTGMSYTYLTTLKGQTSEEYPGLFAFRIDASLLSHVEVWQLQIKFLFPRVGEKSLLIKKVSVIVE 141
The following BLAST results are available for this feature:
BLAST of NO06G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM26125.13.500e-9062.94hypothetical protein Naga_100014g61 [Nannochlorops... [more]
EWM27581.18.000e-1029.45hypothetical protein Naga_100015g23 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000387NSK000387Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00630.1NO06G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g61gene4421Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00630.1NO06G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00630 ID=NO06G00630|Name=NO06G00630|organism=Nannochloropsis oceanica|type=gene|length=3061bp
TCGACCGTTGAGTGACGCTCTTCCAGAGCTCCAGTTTTTGGCCGTACGAC
AATCGGCATTGCCATTCCCATCCCTGCTGTCCCTTGCACGTGTCCTTTCC
TACCCAGGCGCGGTATTTTGTCGAAGCCTTCTCCAGTATGCCTACCAGGC
TGGATGAGACTCTTTCTCACTGTTACTGCCTCTTCCCCCTTGCTTCTGCT
CGCACCCCATTTTCACAGGGATTGCTTTGCCGGTGCCAAGCATCTTCTTT
CTCCAATGGAGCCCCCGACCAAAGTTTAAACATAGGCACTTCATTGTTTC
ACCCCCAGTCCGGACGTCAACCTCACTCCCTCCCCCGGGTGCTAGGCCCG
AGCCCCTTTGCGGCGGCGGGAAGGCGCGGCTTTGCCCTCTCGCTCCTTCC
CCTCTCCCCTAGGCCGCGGCTGCCACGAGCTTCTGCTATAACCAAATGCC
CCATTCTAAATTCAACTGGCGCTCGACGCCGGCGGCCGCTGCTCAAAATT
CGGACGGGACTTTTCGCTTTGGTTTTGGGGACACTTGGAAGCTCACGGAC
CACACCCTGGTTAAGCCCGAGAACGCCAAGGGCTGCACTCTTGATGgtac
gtcactcttgtttgtcgctctctctcattgcgtttgagtcttggtccgtg
tgtcctttgcgtcacttacacagttgtatatattcatcgtatacgtgtgc
acgtaaggaattcattctttcttttggaagctctggcttgggcctactgg
gaggaaacacttaataatttatttttctttggccgataaagtgcttcttt
tcatttcaagtacaccggtatcctgtgtggcttttcttatttaattattt
attttcacccttgtttattcccgcttcccaagtgtcgtatgttttggttc
tcctggaccagttacggccgtggtactcgttcgtcggttttgtggcttgt
tctcctttcccacacattgtgactcaagatggaatagcccactcactcac
gctccctccaattcacattcccctgcacagTGTCTCTAGAGCATGACTCG
AAGGTGACGCAGCTACAGTTGGTGTGCAATGCCTCGGCTCTGCAAGTCAG
TGTGGTGCAGGCCATGAACGCCCAGGAGTTCAAGTGGATCACGCAAATAC
GCGGCACGCCATTGCCAAACCAACCAGACATGTTTTATTTCAGgtgtgta
ctaccatcaagagagattaagaaggaacgaggaagaaggggagtggggat
gctggttgatgcgggtaggctgccggcgagaagagatccgaccaccctct
ttttccgtttgtcaaacgtcaagtatagacgtttccccaatcagtcagct
gcaatgtcttagctcaaccttatactctcccctcgtttcccataatccat
agAACTCCCGAAGAGCTGCTGACCCAGAAGCTGTGGCGCCTACGGGTCAA
GTTCCTCTTCTCCTCCACTGCAATCTCGGCCGTGCGCATCCAGGCTCTCA
GCCTTTCCTTCGAGAAGCTCACCCGCCGGGGGGGCAGCGGTAAGAGCAGC
AACAGCAGAAGCGGTGGCGGCGGTAGTTCCAGTTTGTACCGAAACGACAT
GACCTCGCTAGCTGGAAGCGGGGGTGGAGGAGGGATAGGGGGGATACCCC
GTGCCCCTATGCTGTACCGGGGCCCTGGCACGACGAGCACTACCACCAGT
ACCACGGCCTCGATGACCACCACCCCCACGGGCACCTGCACGCCTTGCTC
TGTATCGGTTTACGGCGACGGTGACGTGGTCTCGGATCTGTCGGAGGAGG
CCAGCACACGCTCACTGGGCAGCCGCACGCCTGACAGTATCAGCAGCGGC
AGCAGCGGCAGCAGCAGTAGAGGCAGCGGGGGTAGGAGGAGAGCAACCAC
TTCCAGCTCGGACAGGGATGCGATCCGTGGCCTGATGGAGGCCATCGACC
AGCTTATATCGCAGGGTGGAAGTAGCAGCGTGCTTGTGGACGAACTGTTG
CGGCTGAAGGAGAGGTTGGCCGATGACTTGTCGCAACGCGCCACGGACCA
GCAATTGAATGCCACTATCGCCCGCATCAGCACTATCATCAAATCCATCG
TTAGATAAAGAAGGGAGGAATGTGGGAAGCAACCTTATCGTCGTCTCTTT
TTTCACCTTGATATATTGTCAGTAATTAGATATCCGAAAGTAGAGAGTTG
GGCGCGTGTTCGGGGGGCGAGCGTATGTGTAGTATGGGGGACGCGTCCTG
GTTGTGTTTTTGAAATTCCGTGTATTGGAAATAGGGATGAGAGACACAAC
GGAAGCCGGCTACGAAACAGTGGCATTTTGTCACACCGACGGCAACGAGG
ACAGTGCGATGGCAAAGAGGAGAACAGCGGCAAGCATAGACTTGTGTCCC
AAGGAGGAGCCAGGGGTTTGTGGATCAAGCTGCCGCGAATGTGTTTGATG
TAAGTGAAAGTAGTGCGATTGTCATATTCTTTACATATATAAGAGAGGGT
AGTGATTAATCGGTCCGAGTTGAGTCATCCAGTAAACAAATTTCTCTTGG
GGAGTTCCGCGTATATGTACTTAAATTTGTCCAGGGAAGGTAGGCTGGAG
GGGATAAGGCAAGGGGCTTAGAGATTGCCTGGGTGGTCTTTCTTAAGCAG
AAAGACGAAATGAGATTAGGGACGAGAGGGGAAAAGTTTAGGAAGAAGAA
AGGGAGAAAAAAGAAGATTTAAGATCTAGAGAATAGAGAGAAGAAAAAAA
TGGAAAAGGCAGAGGTCGGGGCCTCGCATCAGTGCAGGCATGTAGGGGTC
ATGGTCGTAGGCATGAGGACGACAGAGAGGAGCAACGCAAACGATCGCGC
AGGTTGTGAAGAAGTGAAACGACGAACATTTTTAGAGCTGGTAGGTTTGT
ACAGTCAATGGTCGTACGTTTGGTCAGGGCAGGGCCGGTGGAAAGGGAAA
AGCGGTAGGATGAAGAGCGAGAGCAATGGAATCCACTACGCATGACTAAA
AGGGAAGCAATGATGTGCCCATCATGATATATGGCCATGCACTTATTCCT
GCAGACTGTCA
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protein sequence of NO06G00630.1

>NO06G00630.1-protein ID=NO06G00630.1-protein|Name=NO06G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MPHSKFNWRSTPAAAAQNSDGTFRFGFGDTWKLTDHTLVKPENAKGCTLD
VSLEHDSKVTQLQLVCNASALQVSVVQAMNAQEFKWITQIRGTPLPNQPD
MFYFRTPEELLTQKLWRLRVKFLFSSTAISAVRIQALSLSFEKLTRRGGS
GKSSNSRSGGGGSSSLYRNDMTSLAGSGGGGGIGGIPRAPMLYRGPGTTS
TTTSTTASMTTTPTGTCTPCSVSVYGDGDVVSDLSEEASTRSLGSRTPDS
ISSGSSGSSSRGSGGRRRATTSSSDRDAIRGLMEAIDQLISQGGSSSVLV
DELLRLKERLADDLSQRATDQQLNATIARISTIIKSIVR*
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Synonyms
Publications