NO06G00610, NO06G00610 (gene) Nannochloropsis oceanica

Overview
NameNO06G00610
Unique NameNO06G00610
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1511
Alignment locationchr6:230887..232397 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:230887..232397 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO06G00610 vs. NCBI_GenBank
Match: EWM26096.1 (hypothetical protein Naga_100014g63 [Nannochloropsis gaditana])

HSP 1 Score: 403.3 bits (1035), Expect = 1.000e-108
Identity = 230/352 (65.34%), Postives = 262/352 (74.43%), Query Frame = 0 
Query:   98 PIVAPSPETSTAPTQRLVGSE-----GMATISPFRSGSTYNSGAPALGVDPTRPPSYSPEESAFVEMKVDRMLVRKIDLWPPEEIFELMPLLMKGTYFEYALVQRLEYDQRLDGTPLVPSLASSSSKERRRLEHSRSFLASLKYSEEQRLARQWIEGLLEAATESTEAMDEKVFELLAYEGGVLVGPVQEALATMLRRLRSMSPDEKTLTQVVIETLQKRVEAEVQTQEMPFVRLLALLLRLPSPEDRERILRTELRNSRVVEEFAAYLEEGADYVARLRLGPYSLPDDTPEEMKKILAILRGFTRTGRKGEREGVVKTAAGHAAMA----SSSVSRLGIVDVEELRGRGEG 441
            P  A S ET     + LV +E     G  T   F    + +S      +  + P  Y+ EE+  VE K+D ML RKIDLWPPEEIFEL+PLL+K + FEYA+ +RLE D RLDGTPLVPSL    SK RRRLEHSRSFLASLKYSE+QRLARQWIEGLLEAATESTEAMDE+VFELL YE GVLV PVQEAL  MLRRLRSMSPDEKTLTQ V+ETLQKRVEAEV+T+E PFVRLLALLLRL S +DRER+LRTELRNSRV+EEFAAYLEEGADYVARLRLGP SLP+DT +EM+KILAILR FT+TG     +G  + AA     +       + R  +VDVEE+R  GEG
Sbjct:   75 PRTAASDETGLGGRRFLVSTEMGTASGRETTPDFAQSKSSDSMGNEGNLTISEPLQYTTEEATLVETKIDGMLTRKIDLWPPEEIFELLPLLLKSSVFEYAIDKRLEQDLRLDGTPLVPSLGRPESKFRRRLEHSRSFLASLKYSEQQRLARQWIEGLLEAATESTEAMDERVFELLTYENGVLVEPVQEALEDMLRRLRSMSPDEKTLTQAVLETLQKRVEAEVRTRETPFVRLLALLLRLHSRDDRERVLRTELRNSRVIEEFAAYLEEGADYVARLRLGPCSLPEDTSDEMQKILAILRDFTQTGAGEGAQGWTRGAAPSVQPSFQPRPEDIGRRAVVDVEEVREGGEG 426
The following BLAST results are available for this feature:
BLAST of NO06G00610 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26096.11.000e-10865.34hypothetical protein Naga_100014g63 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000389NSK000389Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00610.1NO06G00610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g63gene4423Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00610.1NO06G00610.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00610 ID=NO06G00610|Name=NO06G00610|organism=Nannochloropsis oceanica|type=gene|length=1511bp
ATGAGGAGGAGATACGACTTGGGAGTCCGAATGCGGGCCTTTCTCCTCCT
GCTGCATGTTCTAGGGGAAGCCTTCACAATATCCTCCTCCTTCATGCTGT
GTCCCGCTCGTCCAATCAGACCCACACTAGTAGCTACTCCCGTCCATCGA
CCAGAAGCATGCCCGACGACACCGCAACACCTCTTGAACTTCCTGGGATC
AGTCAGACTGTCCTTATGCTTTCGATTGTCTGCGTCCTTTGACAATGATG
CGGACGGTGGGAATAGTGAAAGTAATGAGGAAGACAGCCACCCGATAGTG
GCACCGTCCCCGGAGACGTCCACCGCCCCAACCCAGAGGTTGGTAGGCTC
CGAAGGGATGGCGACGATCTCTCCCTTTCGAAGCGGTAGCACTTACAACT
CCGGTGCACCTGCCCTGGGAGTAGATCCGACCCGGCCACCGTCGTACTCC
CCGGAAGAGTCCGCTTTCGTGGAGATGAAGGTGGACCGAATGCTTGTGCG
GAAGATTGATCTATGGCCGCCCGAGGAGATATTCGAGCTGATGCCCTTGC
TCATGAAGgtgagcgagaatattgaaaaaattagggatgggggaaaagag
ggagagagatatggagaattgtccagacggcgagatcaagaccactcact
cactcaccgacgcctctttttgctgacactcctgcacacaatcacgcaca
gGGCACATACTTTGAATACGCCCTCGTCCAACGCCTAGAGTACGATCAAC
GGCTGGACGGGACACCCCTTGTTCCCTCCCTCGCCTCATCCAGCAGCAAG
GAACGACGTCGCCTCGAACACTCCCGCTCTTTCCTGGCCAGTTTGAAATA
CTCAGAGGAGCAGCGCCTGGCCCGACAATGGATTGAAGGGCTCCTAGAAG
CAGCGACCGAAAGCACAGAGGCCATGGACGAGAAGGTGTTTGAGTTGCTG
GCTTACGAGGGGGGTGTGCTGGTGGGGCCCGTGCAGGAGGCCCTGGCCAC
CATGCTCCGCCGCCTCCGCTCCATGTCCCCCGACGAAAAGACCTTGACTC
AAGTCGTCATTGAGACGCTCCAAAAGCGCGTGGAGGCGGAGGTCCAAACC
CAGGAAATGCCCTTTGTCCGCCTCCTTGCCCTCCTGCTTCGCCTGCCCTC
ACCTGAAGACCGGGAGCGGATCCTACGGACGGAGCTTCGCAACAGCCGCG
TGGTGGAGGAGTTTGCGGCTTACCTTGAGGAGGGGGCTGATTACGTAGCA
CGGCTACGCCTAGGCCCGTACAGCCTCCCTGATGACACGCCGGAGGAGAT
GAAGAAGATTCTGGCTATTCTCAGGGGGTTCACTCGGACGGGGAGGAAGG
GAGAAAGGGAGGGAGTGGTGAAGACGGCGGCGGGCCATGCGGCGATGGCC
TCGTCCTCCGTGTCAAGATTAGGCATTGTGGACGTAGAGGAGTTGAGGGG
AAGAGGGGAAGGAGGGGAGGGGGGCTTGCCGCCGCCGCCGCCGACGACGA
CGACGAGATGA
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protein sequence of NO06G00610.1

>NO06G00610.1-protein ID=NO06G00610.1-protein|Name=NO06G00610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MRRRYDLGVRMRAFLLLLHVLGEAFTISSSFMLCPARPIRPTLVATPVHR
PEACPTTPQHLLNFLGSVRLSLCFRLSASFDNDADGGNSESNEEDSHPIV
APSPETSTAPTQRLVGSEGMATISPFRSGSTYNSGAPALGVDPTRPPSYS
PEESAFVEMKVDRMLVRKIDLWPPEEIFELMPLLMKGTYFEYALVQRLEY
DQRLDGTPLVPSLASSSSKERRRLEHSRSFLASLKYSEEQRLARQWIEGL
LEAATESTEAMDEKVFELLAYEGGVLVGPVQEALATMLRRLRSMSPDEKT
LTQVVIETLQKRVEAEVQTQEMPFVRLLALLLRLPSPEDRERILRTELRN
SRVVEEFAAYLEEGADYVARLRLGPYSLPDDTPEEMKKILAILRGFTRTG
RKGEREGVVKTAAGHAAMASSSVSRLGIVDVEELRGRGEGGEGGLPPPPP
TTTTR*
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Synonyms
Publications