NO06G00450, NO06G00450 (gene) Nannochloropsis oceanica

Overview
NameNO06G00450
Unique NameNO06G00450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3599
Alignment locationchr6:190444..194042 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:190444..194042 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR004855TFIIA_asu/bsu
Homology
BLAST of NO06G00450 vs. NCBI_GenBank
Match: XP_005856348.1 (hypothetical protein NGA_2018700, partial [Nannochloropsis gaditana CCMP526] >EKU20004.1 hypothetical protein NGA_2018700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 155.2 bits (391), Expect = 1.200e-33
Identity = 97/228 (42.54%), Postives = 115/228 (50.44%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKRTASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQV-EGGREEEIEGARQELERLEKRFWATLERSEESYSYRNGMLGLGWGFEYLMMGAGRGRRAEGGQGHGQMQWNPAWLAAYQQ 566
            KWT+EEEE+TAR+I+YFN+GLL LP   TLRAYISHKL+CDPMRVTKKFTGAC IGK+  S                                                                                   G+V +G   E++  A++ELERLEKRFW TLE+SEE Y YRNG+LGLGWGF+ +M+  GRG  AE  Q   Q  WNP  LAAYQQ
Sbjct:  295 KWTVEEEEYTARLIYYFNRGLLQLPEGQTLRAYISHKLKCDPMRVTKKFTGACCIGKKAFS-----------------------------------------------------------------------GAQQALQPHLQRGEVGQGVAPEDVNRAKEELERLEKRFWTTLEQSEEGYCYRNGVLGLGWGFDCMML--GRGGEAEMAQ---QQSWNPILLAAYQQ 446          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: EWM26137.1 (hypothetical protein Naga_100014g82 [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 1.200e-33
Identity = 97/228 (42.54%), Postives = 115/228 (50.44%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKRTASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQV-EGGREEEIEGARQELERLEKRFWATLERSEESYSYRNGMLGLGWGFEYLMMGAGRGRRAEGGQGHGQMQWNPAWLAAYQQ 566
            KWT+EEEE+TAR+I+YFN+GLL LP   TLRAYISHKL+CDPMRVTKKFTGAC IGK+  S                                                                                   G+V +G   E++  A++ELERLEKRFW TLE+SEE Y YRNG+LGLGWGF+ +M+  GRG  AE  Q   Q  WNP  LAAYQQ
Sbjct:  395 KWTVEEEEYTARLIYYFNRGLLQLPEGQTLRAYISHKLKCDPMRVTKKFTGACCIGKKAFS-----------------------------------------------------------------------GAQQALQPHLQRGEVGQGVAPEDVNRAKEELERLEKRFWTTLEQSEEGYCYRNGVLGLGWGFDCMML--GRGGEAEMAQ---QQSWNPILLAAYQQ 546          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: OEU05753.1 (hypothetical protein FRACYDRAFT_258386 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 92.4 bits (228), Expect = 9.700e-15
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT+EEEE+T+RII YF+ GLL LP   TLR+Y++ KL CDPMR+TKKFTGAC +G+R
Sbjct:   60 KWTIEEEEYTSRIIQYFSTGLLTLPDGATLRSYLADKLNCDPMRITKKFTGACCLGRR 117          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: XP_002294748.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED88108.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.5 bits (223), Expect = 3.700e-14
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT+EEEEFT R+IHYF+ GL+ LP   TLR Y+S KL+CDPMR+TKK+ GA  +GKR
Sbjct:  144 KWTVEEEEFTTRVIHYFSSGLMTLPEGKTLRGYLSEKLQCDPMRITKKYAGASCLGKR 201          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: EWM26332.1 (hypothetical protein Naga_100078g19 [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 6.300e-14
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT EEEEFT R+I YFN GLL LP   TLRAY++ KL+CDPMR+TKKFTGA  +G+R
Sbjct:   13 KWTSEEEEFTQRMIEYFNTGLLPLPNGTTLRAYLAEKLKCDPMRITKKFTGAACLGRR 70          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: GAX20270.1 (hypothetical protein FisN_6Hh221 [Fistulifera solaris])

HSP 1 Score: 89.4 bits (220), Expect = 8.200e-14
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT EEEE+T+RIIHYF+ GLLILP   TLR+Y++ KL CDPMR+TKK+ GA  +G+R
Sbjct:  137 KWTPEEEEYTSRIIHYFSTGLLILPEGYTLRSYLAEKLNCDPMRITKKYAGAACLGRR 194          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: GAX09406.1 (hypothetical protein FisN_6Lh221 [Fistulifera solaris])

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-13
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT EEEE+T+RIIHYF+ GLLILP   TLR+Y++ KL CDPMR+TKK+ GA  +G+R
Sbjct:  100 KWTPEEEEYTSRIIHYFSTGLLILPEGHTLRSYLAEKLNCDPMRITKKYAGAACLGRR 157          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: CBJ29954.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.1 bits (209), Expect = 1.500e-12
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT EEE  TARIIHYF+ G+L LP   TLRAY++ KL CDPMR+TKKFTG   +GKR
Sbjct:   12 KWTSEEEALTARIIHYFSLGVLQLPDGTTLRAYLAQKLDCDPMRITKKFTGTNCLGKR 69          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: XP_009043471.1 (hypothetical protein AURANDRAFT_69453, partial [Aureococcus anophagefferens] >EGB01830.1 hypothetical protein AURANDRAFT_69453, partial [Aureococcus anophagefferens])

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-12
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT+EE EFT RII  FN GLL LP   TLR+Y++ KL CDPMR+TKKF+GA  +GKR
Sbjct:   36 KWTIEETEFTTRIIELFNTGLLELPEGATLRSYLAQKLSCDPMRITKKFSGASCLGKR 93          
BLAST of NO06G00450 vs. NCBI_GenBank
Match: CBN74989.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.4 bits (202), Expect = 1.000e-11
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0
Query:  339 KWTLEEEEFTARIIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKR 397
            KWT EEE +T +II+ FN+GLL L P  TLR+Y+S KL CDPMR+TKKF GA  IGKR
Sbjct:  257 KWTPEEEVYTTKIINDFNKGLLPLAPGTTLRSYLSEKLNCDPMRITKKFAGASCIGKR 314          
The following BLAST results are available for this feature:
BLAST of NO06G00450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005856348.11.200e-3342.54hypothetical protein NGA_2018700, partial [Nannoch... [more]
EWM26137.11.200e-3342.54hypothetical protein Naga_100014g82 [Nannochlorops... [more]
OEU05753.19.700e-1567.24hypothetical protein FRACYDRAFT_258386 [Fragilario... [more]
XP_002294748.13.700e-1465.52predicted protein [Thalassiosira pseudonana CCMP13... [more]
EWM26332.16.300e-1468.97hypothetical protein Naga_100078g19 [Nannochlorops... [more]
GAX20270.18.200e-1465.52hypothetical protein FisN_6Hh221 [Fistulifera sola... [more]
GAX09406.11.400e-1365.52hypothetical protein FisN_6Lh221 [Fistulifera sola... [more]
CBJ29954.11.500e-1267.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_009043471.12.000e-1265.52hypothetical protein AURANDRAFT_69453, partial [Au... [more]
CBN74989.11.000e-1165.52conserved unknown protein [Ectocarpus siliculosus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000406NSK000406Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00450.1NO06G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100014g82gene4441Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00450.1NO06G00450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00450 ID=NO06G00450|Name=NO06G00450|organism=Nannochloropsis oceanica|type=gene|length=3599bp
ATGCAGCAGACAGCCCCTTCACTTCCCAAGCAGCAGCAGTGTGATGAGCA
GCAGCGGCAGCCGCTACCGCCGCGGCCGCAAGACCAACATGCTTGCTCCC
TCCCCTGCTTGAACGCTGTCAGCACCAGCACCACGACCTCCGATTTAATG
TTCAGCGAAACATTGCAAAGTTTTTTTCCTGACTCCGTTACTATCCCTCC
CCGTACTTCCTCTTACTCTGCTCTCGAGCAGCACGACGACGACAGCAGCT
GCGGACATGAACGAGAGTCAAGATACCACCGCCGCCACATGTCATCTTCT
TTCTCCTCTTCATTCGCTGCCTTTGACAGTTTGATGGGCGACAGTCTTTT
CGAGGAAGAAATAGGGGGAGGGAGAGAAGGAGGGAAGAGGACTGGCCCAG
TGTTGGATGCGGATGAGGAGATGGGGGGAGGGAAGGAGGGAGGGAGGGAT
CGAGGGGGTCTCTCCTTCTTTCCTTACCTTGACTGCCACCACGACCAAAA
ACAGAGTTACTTTTTTGATCCGCAGCGCCATCAGCCATCGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAAGCGGGAGGAGGAGGAGGGGGAGGAGAAGGA
ACAGGAGCAGGAGCAGGAGGAACAGGAGCAGGAGCAGGAGCAGGAGCAGG
AGGAGGAGGAGGAATAGGAGCAGCACGAGGAGAAGGAGGAGAAGGAGGAG
GAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGTAGGAGCAGGA
GCAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGG
AGGAGGAGAAACCAAAGGAGGAGTAGAAGGAGGAGAAGTAGGGATCGTCC
CCGTCACTGATTCTCCGTTTGAACCCAAGAAAAATGCCACCGCCACCTAC
AGCAGCGGCGGCGGCAGCAGCAGCAGCAAAATAGCAgtaccgtcgaaatc
ctattcctgctcctccttttttccctcctcttcctccgtcaactcctcct
catcttcctctttgtcctccacaaaagcaaccacaacctttatatccagA
CCCACCACACTCTCTCCCTCGGATCCTCCTCCCCTCCCCCCCCTACCCCC
TCTTCTCCCCCCGTCCTCCGCAAGGGCAAGTGGACCCTCGAAGAGGAAGA
ATTTACCGCCCGCATCATCCACTACTTCAATCAAGGCCTCCTTATCCTCC
CACCCTCACTCACGCTTCGGGCATATATTTCCCACAAGTTAAGATGCGAC
CCTATGAGAGTCACCAAAAAATTCACGGGCGCCTGCTATATCGGCAAGCG
GACGGCCAGTGTCCAGCAACAGCAGCAGCAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
GCAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAAC
AACAACAACGACAACAGCAACAGCAGATGCAGGTGTTGCGGCAGCATGGG
AAGGGGGAGGGGCAAGTGGAGGGAGGTAGGGAGGAAGAGATAGAGGGAGC
GAGACAGGAGCTGGAGAGGTTGGAAAAGAGGTTCTGGGCAACGCTGGAGC
GGTCAGAGGAAAGCTATAGCTACCGTAATGGAATGTTGGGCCTCGGTTGG
GGGTTTGAATATCTCATGATGGGGGCAGGGAGGGGGAGAAGGGCGGAGGG
GGGGCAGGGGCACGGACAGATGCAGTGGAATCCGGCTTGGCTAGCGGCGT
ATCAGCAAGAGATGTTGACAGCAGCAGTATCAGTGGCTGCAGCTGCAGCA
GCAACAACATCAGCAACAGGATCGATGACAGCCAAAGGAGTGATGGAAGG
AGAAGTGAAAGGAGAAAACTGTAGCATGGGTGAAGTGTCAGCAGCAGCAC
GGATCATCAGCAGCCTGCCCTCCCTCCCGCCCGCCGTCTCTTCCTCCCTC
TCCTCCCCGGTGGGAATAAGTACAGATCGAGACCGAGGTCTTGCCCCCAT
ATATCAGCGCTTCGGGATCCCCCCCCCTCCTCCTACCTACCTCGACGCCC
AGGCCTATCGGACACTCAATCTCCCCCTTCCGGGCAGCAACAGCAACAGC
AGCAGCAGTAGCAGCAGCAGCAACAGCAGCAATATCATCAATAGTAAGAA
TGACAACAGCCACATTAGCAGCAGTTATAGCGAGAGTATTAAGATGGCTC
GATCCCCAGGCCCTGGTGGAGGAGGGGAAGGGAGGGAGAGTAAAAAAGCC
GCGCTTGGCATATGTCCCGATCGATTGGCTCAACTCCTTGGCCCCGCTCC
TCCTCCTCCTTCTTCTCCTTCATCCCGCCTCTACATGCCTTCGTTTCCTC
CTTCCCTTTCCCTCCACATGCCCAACATCGCGCTCCTGGCTGGTGGACAA
GCAGCCGCATCAGCTCCAGCAGCGGTAGCCACTACGACAGTAGCAGCAGC
AGCAGCAGCAGCCACGAAGCAGCAGAAGAAGGGGAAGGCGGGAGAAAAAA
AGGGAGGGAAGGAAGGGGAAAAGTTGCAAATGACAGTGACGCCTGTGAAT
ACTCTTTCTCCTGTTGCCACCAGCAGCAGCACCACCACCACCAGCAGCAG
CAGCAGCATCGCCAGAACATCTCATTCTTCCTCCTCTTCCTCTTCCTCTT
CCTCTTTATCTTCCTCTTCCTTCCTCCCTTTTTCCCCCTCGCTTTCCCTG
CTTTCATCCTCGGTAGCCCAGCAACAGCTCTACATTCAGTATCTGCAGCT
GCAACAACAACAGCTATTGGATCAGCAGCAGCCACAGCAGCTGCAGCAGT
TTCTTCCCCTCCCATTATTCTTGCCGGCGGTCGGCACGGCCCCGGGGAAA
GGAGGCATGTCATGTGTATCTAGCACCAGCAGCAACAGCAACAATAGCAA
CAACAGCAACAGCATCAAAAGCAGTAGCAGCAGCAGCAACAGCAGCAGCA
ACAACGGTGACAATAGCATCAATAGCAACAGCAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAATA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAGCAACAGC
AACAGCAACAGCAACAGCAGGAGGCCTCCTATCCTCCTTGTTGCTCAAGG
GGGAGTGGTAGGCGAGGAGGTGAGGGAAGGAGGGAGGGAAGAAGGGCAAG
GACAAGGACTTCTGCTCTCGAAACGCGGGCGAGGTCGGCCAAAGGGTTCG
TATAAGAAAGCAAAGAAGGGAGGGGAGGAAGGAGAAGAGGCAGCAGGAGC
AAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAGCAGTAGAAG
CAACTGGGCCTCTGATGAGGATAAGGGAGGAGGCTCAACGGCAGGAGGAG
CAGGAGCAAGAGCAGCAACAGCAGCTGAAAGCGGGCTGGCACTTAACCAG
GGAAGGCGGGGGAGGGGGAGGGGGGAGGGAGCAAGCGAGCGAGGAATGA
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protein sequence of NO06G00450.1

>NO06G00450.1-protein ID=NO06G00450.1-protein|Name=NO06G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1162bp
MQQTAPSLPKQQQCDEQQRQPLPPRPQDQHACSLPCLNAVSTSTTTSDLM
FSETLQSFFPDSVTIPPRTSSYSALEQHDDDSSCGHERESRYHRRHMSSS
FSSSFAAFDSLMGDSLFEEEIGGGREGGKRTGPVLDADEEMGGGKEGGRD
RGGLSFFPYLDCHHDQKQSYFFDPQRHQPSQQQQQQQQQQAGGGGGGGEG
TGAGAGGTGAGAGAGAGGGGGIGAARGEGGEGGGGGGGEGGGGGGGVGAG
AGGRGGGGGGGEGGGGGGGETKGGVEGGEVGIVPVTDSPFEPKKNATATY
SSGGGSSSSKIATHHTLSLGSSSPPPPTPSSPPVLRKGKWTLEEEEFTAR
IIHYFNQGLLILPPSLTLRAYISHKLRCDPMRVTKKFTGACYIGKRTASV
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQRQQQQQMQVLRQHGKGEGQVEGGREEEIEGARQEL
ERLEKRFWATLERSEESYSYRNGMLGLGWGFEYLMMGAGRGRRAEGGQGH
GQMQWNPAWLAAYQQEMLTAAVSVAAAAAATTSATGSMTAKGVMEGEVKG
ENCSMGEVSAAARIISSLPSLPPAVSSSLSSPVGISTDRDRGLAPIYQRF
GIPPPPPTYLDAQAYRTLNLPLPGSNSNSSSSSSSSNSSNIINSKNDNSH
ISSSYSESIKMARSPGPGGGGEGRESKKAALGICPDRLAQLLGPAPPPPS
SPSSRLYMPSFPPSLSLHMPNIALLAGGQAAASAPAAVATTTVAAAAAAA
TKQQKKGKAGEKKGGKEGEKLQMTVTPVNTLSPVATSSSTTTTSSSSSIA
RTSHSSSSSSSSSSLSSSSFLPFSPSLSLLSSSVAQQQLYIQYLQLQQQQ
LLDQQQPQQLQQFLPLPLFLPAVGTAPGKGGMSCVSSTSSNSNNSNNSNS
IKSSSSSSNSSSNNGDNSINSNSNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNSNSNSNSNSRRPPILLVAQGGVVG
EEVREGGREEGQGQGLLLSKRGRGRPKGSYKKAKKGGEEGEEAAGARAAA
AAAAAAAAIAVEATGPLMRIREEAQRQEEQEQEQQQQLKAGWHLTREGGG
GGGGREQASEE*
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Synonyms
Publications