NO06G00410, NO06G00410 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO06G00410 vs. NCBI_GenBank
Match: EWM26077.1 (Transcription elongation factor S-II, central domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 119.4 bits (298), Expect = 1.900e-22 Identity = 182/433 (42.03%), Postives = 207/433 (47.81%), Query Frame = 0
Query: 1590 ELLRKKYASIKYNLDSPHNPYLLHRLLCGSLSLDALCHLSADELAATNEGYVLDEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGASGNKRKKMSLSPLLLRPRELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFLPLHPTRTGLPQQDTXXXXXXXXXXXXXXXXXXXXXXXXXTFYTLEQPSSSGEGRGTYLYMKMWAPAAAHPTLASFLQSDALVVKGRTRIPDLNTYLQ------------------------------------------ENTLAFTALVDALVSSEKAAYVGVGFSSLPPXXXXXXXXXXXXXXXXXXXXXXXXGDSLHVYVVPQALLRSCPA 1981
E LRKKYASIKYNLD P NPYLLHR+L G LS++ALC LS ELAAT++ E XXXXXXXXXXXXXXX +G PRELL XXXXXXXXXXXXXXXXXXXXX + PL P+ GL + XXXXXXXXXXXXTFYTLEQPSS GEG+GT+LY++ W A A LA L+ ALVVKGRT+I DLN+YL+ EN+LAFTALV ALV+ +KAAY+G+GFS P XXXXXXXXXXXXXXX +LH+Y+VPQALLR CPA
Sbjct: 133 ESLRKKYASIKYNLDKPDNPYLLHRILSGDLSMEALCLLSPQELAATDQE---AEASRLTAAKKALLVDVHMFPLPVGEGGGQEGVTERKRKRGSLGEVEDRGEDEAXXXXXXXXXXXXXXXPTPSPTG-------------PPRELLQLXXXXXXXXXXXXXXXXXXXXXAAIAQTGASALKPSAAPSSTSGGLGEGDTERKGGTVPPFFLPVCPHA--PLVPSPVGLDE-------------VGRXXXXXXXXXXXXTFYTLEQPSSGGEGKGTFLYLQAWTLAHARTALAESLKRGALVVKGRTKIADLNSYLRQCQSSPRFQVLPLLLTDAAPSFPACPPPSALLPRGFFPSSPDENSLAFTALVQALVAGKKAAYIGLGFSFSP------SAPKXXXXXXXXXXXXXXXXXTLHIYMVPQALLRECPA 528
BLAST of NO06G00410 vs. NCBI_GenBank
Match: EWM26140.1 (hypothetical protein Naga_100014g86 [Nannochloropsis gaditana]) HSP 1 Score: 85.5 bits (210), Expect = 3.000e-12 Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0
Query: 65 KNTHPVDAVWVEALAALSEEEEERGRWRQAFNQQTPCDLCSNEGGLVVKCAKSGCSKEFHPS 127
K PVDA+WV AL AL EEE +GRWR AF QQTPC+LC + GGLVV+CAKSG E PS
Sbjct: 42 KTRRPVDALWVRALTALPTEEEGQGRWRFAFTQQTPCELCDDSGGLVVQCAKSGKVPEAGPS 103
BLAST of NO06G00410 vs. NCBI_GenBank
Match: XP_020509424.1 (lysine-specific demethylase 7A [Labrus bergylta]) HSP 1 Score: 70.1 bits (170), Expect = 1.300e-7 Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0
Query: 179 LYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVEA 256
LYCVCRQPYD +IEC CKDWFH C++++ V D Y CP+C VV+ PS +KK ++ RH+ EA
Sbjct: 6 LYCVCRQPYDVSRFMIECDICKDWFHGSCVQVEEHHAVDIDV-YHCPNCDVVQGPSL------MKKRNNWHRHDYTEA 76
BLAST of NO06G00410 vs. NCBI_GenBank
Match: NP_001085579.1 (lysine (K)-specific demethylase 7A L homeolog [Xenopus laevis] >AAH72971.1 MGC82519 protein [Xenopus laevis]) HSP 1 Score: 69.3 bits (168), Expect = 2.200e-7 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
Query: 175 GTPCLYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVEA 256
G +YCVCRQPYD +IEC CKDWFH+ C++++ D Y CP+C V+ PSQ +KK ++ RH+ E+
Sbjct: 3 GAAPVYCVCRQPYDVSRFMIECDICKDWFHSSCVKVEEHQAADIDL-YHCPNCEVLHGPSQ------LKKRRNWHRHDYTES 77
BLAST of NO06G00410 vs. NCBI_GenBank
Match: XP_016890077.1 (PREDICTED: lysine-specific demethylase 7A [Cynoglossus semilaevis]) HSP 1 Score: 69.3 bits (168), Expect = 2.200e-7 Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0
Query: 179 LYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVE 255
LYCVCRQPYD +IEC CKDWFH C++++ V D Y CP+C VV PS +KK +++ RH+ E
Sbjct: 6 LYCVCRQPYDVSRFMIECDICKDWFHGSCVQVEEHQAVDIDV-YHCPNCDVVHGPSL------MKKRSNWHRHDYTE 75
BLAST of NO06G00410 vs. NCBI_GenBank
Match: OCT88082.1 (hypothetical protein XELAEV_18016709mg [Xenopus laevis]) HSP 1 Score: 69.3 bits (168), Expect = 2.200e-7 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
Query: 175 GTPCLYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVEA 256
G +YCVCRQPYD +IEC CKDWFH+ C++++ D Y CP+C V+ PSQ +KK ++ RH+ E+
Sbjct: 3 GAAPVYCVCRQPYDVSRFMIECDICKDWFHSSCVKVEEHQAADIDL-YHCPNCEVLHGPSQ------LKKRRNWHRHDYTES 77
BLAST of NO06G00410 vs. NCBI_GenBank
Match: XP_018107379.1 (PREDICTED: lysine-specific demethylase 7A isoform X1 [Xenopus laevis]) HSP 1 Score: 69.3 bits (168), Expect = 2.200e-7 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
Query: 175 GTPCLYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVEA 256
G +YCVCRQPYD +IEC CKDWFH+ C++++ D Y CP+C V+ PSQ +KK ++ RH+ E+
Sbjct: 3 GAAPVYCVCRQPYDVSRFMIECDICKDWFHSSCVKVEEHQAADIDL-YHCPNCEVLHGPSQ------LKKRRNWHRHDYTES 77
BLAST of NO06G00410 vs. NCBI_GenBank
Match: XP_018107380.1 (PREDICTED: lysine-specific demethylase 7A isoform X2 [Xenopus laevis]) HSP 1 Score: 69.3 bits (168), Expect = 2.200e-7 Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
Query: 175 GTPCLYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVEA 256
G +YCVCRQPYD +IEC CKDWFH+ C++++ D Y CP+C V+ PSQ +KK ++ RH+ E+
Sbjct: 3 GAAPVYCVCRQPYDVSRFMIECDICKDWFHSSCVKVEEHQAADIDL-YHCPNCEVLHGPSQ------LKKRRNWHRHDYTES 77
BLAST of NO06G00410 vs. NCBI_GenBank
Match: NP_001072664.1 (lysine-specific demethylase 7A [Xenopus tropicalis] >Q08D35.1 RecName: Full=Lysine-specific demethylase 7A; AltName: Full=JmjC domain-containing histone demethylation protein 1D; AltName: Full=Lysine-specific demethylase 7 >AAI23961.1 jumonji C domain containing histone demethylase 1 homolog D [Xenopus tropicalis]) HSP 1 Score: 68.9 bits (167), Expect = 2.900e-7 Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0
Query: 175 GTPCLYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVE 255
G +YCVCRQPYD +IEC CKDWFH+ C++++ D Y CP+C V+ PSQ +KK ++ RH+ E
Sbjct: 3 GAAPVYCVCRQPYDVSRFMIECDICKDWFHSSCVKVEEHQAADIDL-YHCPNCEVLHGPSQ------LKKRRNWHRHDYTE 76
BLAST of NO06G00410 vs. NCBI_GenBank
Match: XP_017947666.1 (PREDICTED: lysine-specific demethylase 7A isoform X1 [Xenopus tropicalis]) HSP 1 Score: 68.9 bits (167), Expect = 2.900e-7 Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 0
Query: 175 GTPCLYCVCRQPYDDEGQLIECATCKDWFHAGCMRLDASAYVSTDKDYICPSC-VVEAPSQEKIEANVKKEASYSRHEEVE 255
G +YCVCRQPYD +IEC CKDWFH+ C++++ D Y CP+C V+ PSQ +KK ++ RH+ E
Sbjct: 3 GAAPVYCVCRQPYDVSRFMIECDICKDWFHSSCVKVEEHQAADIDL-YHCPNCEVLHGPSQ------LKKRRNWHRHDYTE 76 The following BLAST results are available for this feature:
BLAST of NO06G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 17
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO06G00410 ID=NO06G00410|Name=NO06G00410|organism=Nannochloropsis oceanica|type=gene|length=12984bpback to top protein sequence of NO06G00410.1 >NO06G00410.1-protein ID=NO06G00410.1-protein|Name=NO06G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=2955bpback to top Synonyms
Publications
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