NO06G00340, NO06G00340 (gene) Nannochloropsis oceanica

Overview
NameNO06G00340
Unique NameNO06G00340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1295
Alignment locationchr6:146789..148083 -

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Properties
Property NameValue
DescriptionSmall nuclear ribonucleoprotein family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:146789..148083 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
GO:0016043cellular component organization
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027248Sm_D2
IPR001163Ribonucl_LSM
Homology
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: CCA18019.1 (hypothetical protein SORBIDRAFT_06g022770 [Albugo laibachii Nc14] >CCI46241.1 unnamed protein product [Albugo candida])

HSP 1 Score: 167.5 bits (423), Expect = 2.200e-38
Identity = 80/106 (75.47%), Postives = 93/106 (87.74%), Query Frame = 0 
Query:    3 SDKDGAPPGEEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKKA-KPQNKERYISKLFLRGDSVILVLRNPN 108
            +D D     +E  EDF KGPLS+L HSVKNN+QVL+NVRNNHKLL RVKAFDRHCN++LENVKEMWTEVPKSGKGKK+ KP NK+R++SKLFLRGDSV+LVLRNP+
Sbjct:    4 NDTDEFKRVQENEEDFQKGPLSILMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKSGKPVNKDRFVSKLFLRGDSVVLVLRNPH 109
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_009525812.1 (hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae] >EGZ16754.1 hypothetical protein PHYSODRAFT_559644 [Phytophthora sojae])

HSP 1 Score: 166.4 bits (420), Expect = 4.900e-38
Identity = 78/97 (80.41%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   12 EEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKK-AKPQNKERYISKLFLRGDSVILVLRNPN 108
            +E  E+F KGPLSVL HSVKNN+QVL+NVRNNHKLL RVKAFDRHCN++LENVKEMWTEVPKSGKGKK AKP NK+R++SK+FLRGDSVI+VLRNP+
Sbjct:   26 QEDEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKAAKPVNKDRFVSKMFLRGDSVIIVLRNPH 122
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BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_024573210.1 (small nuclear ribonucleoprotein sm d2 [Plasmopara halstedii] >CEG36841.1 small nuclear ribonucleoprotein sm d2 [Plasmopara halstedii])

HSP 1 Score: 165.6 bits (418), Expect = 8.400e-38
Identity = 77/97 (79.38%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   12 EEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKK-AKPQNKERYISKLFLRGDSVILVLRNPN 108
            +E  E+F KGPLSVL HSVKNN+QVL+NVRNNHKLL RVKAFDRHCN++LENVKEMWTEVPK+GKGKK AKP NK+R++SK+FLRGDSVI+VLRNP+
Sbjct:   13 QENEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKAGKGKKAAKPVNKDRFVSKMFLRGDSVIIVLRNPH 109
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: POM59924.1 (Small nuclear ribonucleoprotein Sm D2 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 165.6 bits (418), Expect = 8.400e-38
Identity = 77/97 (79.38%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   12 EEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKK-AKPQNKERYISKLFLRGDSVILVLRNPN 108
            +E  E+F KGPLSVL HSVKNN+QVL+NVRNNHKLL RVKAFDRHCN++LENVKEMWTEVPKSGKGKK AKP NK+R++SK+FLRGDSVI+V+RNP+
Sbjct:   13 QEDEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKSGKGKKAAKPVNKDRFVSKMFLRGDSVIIVMRNPH 109
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_008916021.1 (small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica INRA-310] >ETI54456.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica P1569] >ETK94326.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica] >ETL47692.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica] >ETM00811.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica] >ETM53985.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica] >ETM98680.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica INRA-310] >ETO83206.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica P1976] >ETP24293.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica CJ01A1] >ETP52269.1 small nuclear ribonucleoprotein Sm D2 [Phytophthora parasitica P10297])

HSP 1 Score: 165.2 bits (417), Expect = 1.100e-37
Identity = 77/97 (79.38%), Postives = 90/97 (92.78%), Query Frame = 0 
Query:   12 EEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKK-AKPQNKERYISKLFLRGDSVILVLRNPN 108
            +E  E+F KGPLSVL HSVKNN+QVL+NVRNNHKLL RVKAFDRHCN++LENVKEMWTEVPK+GKGKK AKP NK+R++SK+FLRGDSVI+VLRNP+
Sbjct:   13 QEDEEEFQKGPLSVLMHSVKNNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKAGKGKKAAKPVNKDRFVSKMFLRGDSVIIVLRNPH 109
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_009033195.1 (hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens] >EGB12106.1 hypothetical protein AURANDRAFT_20164 [Aureococcus anophagefferens])

HSP 1 Score: 160.2 bits (404), Expect = 3.500e-36
Identity = 77/99 (77.78%), Postives = 91/99 (91.92%), Query Frame = 0 
Query:   11 GEEGVE-DFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKG-KKAKPQNKERYISKLFLRGDSVILVLRNPN 108
            GE  VE +F+ GPLS+L HS+K+N+QVL+NVRNNHKLL RVKAFDRHCN++LENVKE+WTE+PK+GKG KK+KP NKERYISK+FLRGDSVILVLRNPN
Sbjct:    4 GEPSVENEFATGPLSLLLHSMKSNSQVLINVRNNHKLLARVKAFDRHCNMVLENVKEVWTEIPKTGKGKKKSKPVNKERYISKMFLRGDSVILVLRNPN 102
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_015758366.1 (PREDICTED: small nuclear ribonucleoprotein Sm D2 [Acropora digitifera])

HSP 1 Score: 159.8 bits (403), Expect = 4.600e-36
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0 
Query:   16 EDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKKAKPQNKERYISKLFLRGDSVILVLRNP 107
            E+F+ GPLSVL  SVKNNTQVL+N RNN KLL RVKAFDRHCN++LENVKEMWTE PKSGKGKKAKP NK+RYI+K+FLRGDSVILVLRNP
Sbjct:   23 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKAKPVNKDRYIAKMFLRGDSVILVLRNP 113
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_020604241.1 (small nuclear ribonucleoprotein Sm D2 [Orbicella faveolata])

HSP 1 Score: 159.8 bits (403), Expect = 4.600e-36
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0 
Query:   16 EDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKKAKPQNKERYISKLFLRGDSVILVLRNP 107
            E+F+ GPLSVL  SVKNNTQVL+N RNN KLL RVKAFDRHCN++LENVKEMWTE PKSGKGKKAKP NK+RYI+K+FLRGDSVILVLRNP
Sbjct:   23 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKAKPVNKDRYIAKMFLRGDSVILVLRNP 113
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: XP_022789449.1 (small nuclear ribonucleoprotein Sm D2 [Stylophora pistillata] >PFX26362.1 Small nuclear ribonucleoprotein Sm D2 [Stylophora pistillata])

HSP 1 Score: 159.8 bits (403), Expect = 4.600e-36
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = 0 
Query:   16 EDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKGKKAKPQNKERYISKLFLRGDSVILVLRNP 107
            E+F+ GPLSVL  SVKNNTQVL+N RNN KLL RVKAFDRHCN++LENVKEMWTE PKSGKGKKAKP NK+RYI+K+FLRGDSVILVLRNP
Sbjct:   23 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKAKPVNKDRYIAKMFLRGDSVILVLRNP 113
[Close]
BLAST of NO06G00340 vs. NCBI_GenBank
Match: KGL73797.1 (Small nuclear ribonucleoprotein Sm D2, partial [Tinamus guttatus])

HSP 1 Score: 159.5 bits (402), Expect = 6.000e-36
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0 
Query:   16 EDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRVKAFDRHCNLLLENVKEMWTEVPKSGKG-KKAKPQNKERYISKLFLRGDSVILVLRNP 107
            E+F+ GPLSVL  SVKNNTQVLVN RNN KLLGRVKAFDRHCN++LENVKEMWTEVPKSGKG KKAKP NK+RYISK+FLRGDSVI+VLRNP
Sbjct:   21 EEFNTGPLSVLTQSVKNNTQVLVNCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGRKKAKPVNKDRYISKMFLRGDSVIVVLRNP 112
The following BLAST results are available for this feature:
BLAST of NO06G00340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA18019.12.200e-3875.47hypothetical protein SORBIDRAFT_06g022770 [Albugo ... [more]
XP_009525812.14.900e-3880.41hypothetical protein PHYSODRAFT_559644 [Phytophtho... [more]
XP_024573210.18.400e-3879.38small nuclear ribonucleoprotein sm d2 [Plasmopara ... [more]
POM59924.18.400e-3879.38Small nuclear ribonucleoprotein Sm D2 [Phytophthor... [more]
XP_008916021.11.100e-3779.38small nuclear ribonucleoprotein Sm D2 [Phytophthor... [more]
XP_009033195.13.500e-3677.78hypothetical protein AURANDRAFT_20164 [Aureococcus... [more]
XP_015758366.14.600e-3682.42PREDICTED: small nuclear ribonucleoprotein Sm D2 [... [more]
XP_020604241.14.600e-3682.42small nuclear ribonucleoprotein Sm D2 [Orbicella f... [more]
XP_022789449.14.600e-3682.42small nuclear ribonucleoprotein Sm D2 [Stylophora ... [more]
KGL73797.16.000e-3684.78Small nuclear ribonucleoprotein Sm D2, partial [Ti... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL091nonsL091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000425NSK000425Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00340.1NO06G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00340.1NO06G00340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00340 ID=NO06G00340|Name=NO06G00340|organism=Nannochloropsis oceanica|type=gene|length=1295bp
ATGGACTCGGACAAAGACGGGGCGCCACCGGGAGAGGAGGGAGTGGAGGA
CTTTAGCAAGGGCCCGTTGAGTGTCCTCTGGCATAGCGTCAAGgtgagtt
gagtagggaggagggaggagagaaagggggaaagtgaagaggagagaaag
gagcgggtaataagagagggacggaggaccagggcaaccggaaggaaagt
ggggcgtgtactacccgcatccaggcgaggaagtggtaggggggtaggga
gagggagggctgcagaacggaggacggtagcgaaaggagtgatgcttttc
tatgacaaaaagcaagcttggtagacattgacagggagtcccgagacaaa
gagggaggaagataaagaaggagggaaggtggaaggaaaggagagagggg
aggagggactggaatggtcgtccgtccctccctccctaggctccaggtag
acgcaatgcctcgacctcttttatgcttcgacgctagtcactcgccaccc
tatctccaaaccccatgtttccatccacgggcacgcattccttccttcga
ctgactcctccctatcctccctcctttatgtccgtccgatcagAACAACA
CCCAGGTGCTGGTTAATGTCCGCAATAATCATAAGCTCCTTGGCCGGGTC
AAGGCATTTGACAGACATTGTAACCTgtaagcagggggaggagagggagg
gagaaagggacggaaggatgaacggagggagggagggagggagggaggat
gggacgtgggaacaggagacatcggctgtgggggacgccgcaacatgcct
gatgcattgtttctagatggttctatacatggtttcacgatagttccatt
ccatagtgtctcgaagcatgctctacacatcgttcgaccatgatgtcacc
cacacctcttccctccttccctccctcccttcctccctccctccctcctc
cctccctccctgtctgccttgaccgggggaacagGCTGCTAGAAAATGTG
AAGGAGATGTGGACAGAGGTGCCCAAGAGTGGAAAGGGAAAGAAAGCCAA
GCCGgtaaggagggagggagggagggacagtgatcttgatggcacctcgt
cctcattcactggaccgtgcgaccccctccctcacacatcactcttctct
tcttcctccttccccctcctcctcctccccctcctcctcctctttcttcc
ttctcctcccttcgcagCAAAACAAGGAGCGGTACATTAGCAAGCTTTTC
TTGAGAGGCGACTCAGTCATCCTCGTCCTGCGCAACCCTAATTAA
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protein sequence of NO06G00340.1

>NO06G00340.1-protein ID=NO06G00340.1-protein|Name=NO06G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MDSDKDGAPPGEEGVEDFSKGPLSVLWHSVKNNTQVLVNVRNNHKLLGRV
KAFDRHCNLLLENVKEMWTEVPKSGKGKKAKPQNKERYISKLFLRGDSVI
LVLRNPN*
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Synonyms
Publications