NO06G00200, NO06G00200 (gene) Nannochloropsis oceanica

Overview
NameNO06G00200
Unique NameNO06G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4068
Alignment locationchr6:81972..86039 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:81972..86039 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
Homology
The following BLAST results are available for this feature:
BLAST of NO06G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR016ncniR016Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR147ngnoR147Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00200.1NO06G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|73954gene_12041Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00200.1NO06G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00200 ID=NO06G00200|Name=NO06G00200|organism=Nannochloropsis oceanica|type=gene|length=4068bp
CATGGTTTTGGGGTTTAATGCTGTCAAGAGGGAGGGAATGGATGGGAGGA
TATCAGCAAGCTAGAGAGGGGTGCGTGGCTGTAGGATGATTTTCGGCAAC
GGCTACAAAAGCACATGTCCTCGGAGCCTTTTTTTGTGCCTTTCCTTCCT
GTGGGTGTGTGCGCCTGGGGTCAGGTGCGCGTCGTACTACAAGGAAAACT
TGTGTCTTGCACCTTGTCACGTAACAATCAGTCGACGCAGCAGTAGCAGC
ATCGCCAGCCCTGTCCGAGAGAAAGTTCCTTGGATAAGTTGAAATGCTCA
TGGCCAACAACAACAAGCATTTCCCAGTCCCAACTACACACGACCCCACG
CACACAGTGACTGAGGACGAGCACCTAAGTCAGGTGGAGAAGACATAATC
ACAAGTGCAGATTTTGCCAGTCTGGCTTCTGAAGCCAGGGGGACACGGAG
GGAAGAAAAAGTCATAATGCCGCGATCAAGCTCCCTCCTACTCGTCGTCT
CCCTCCTCCTTCACTCCTTCCTCGACCCCGTCCAAACGCAAGCCCGAGCC
CAAGCACGAGTTGAAGCGACGAAACCCACAAGAGCTGACGCCTCCACGAT
GGACTTCCTCAGGGACTCGGCCAGGGAGGTGATGCATTGCCCAGgtgaga
agggagggagagagggagggagggagggaagaagggcaggcaagaatgga
cgcacggtttgaaaggacctcttaggatatatagatcaggcatgaagaaa
cagccatcaagatgtagtgctacatggccttgtcaacatgtctctcgtcc
agcacaatttcatctttcgacctccccctccctccctccctccctccctc
cctccctgtcagGTGCCTTCCTTGGATGTATCCTCTCGGCCCCCTGCCGT
GCCACCATGGCTTGTGCTGCGCATTGCGTGACGGGAACCAACATGAATCT
GACGTGTTTCTTGCCTTGCACGCAGGGGAACGACCAGACGgtacgctgcc
ctctcccctccctccctccttctatccctgcgtcccacccttctatctca
ccgatgtaaacgtgtacatatacatgcacatatgtacttacatacgccta
tccacgctttagGCCTTTACTACTTTTACGAACTGTGTCATGAAGGAGAG
GGCATCGCCGGACCCAGGGGTGGATGACGTGCCCAACGGGGGGAAATGCC
TGGATGTCGAGgtgagggagggagggagggagggagggagggagggaggg
ctcgctcacacaccctctctgctcccatacttttttttaattgttcctcc
ccctaccccctttctaccccctcctccctcttcctccccctcctcctcct
cctccgcctcctcctgctcctgctcttcctccccctcctccttcttcttc
tacccctatttctcctccttcctaatcaaaatacttatcaagTCTTTCGT
TGTTCCGGATTGGCGGATATCCTCCCTAGAAGGAGAGTGGTTCGTCGTGG
CGgtacgtcctcctccctccctccctccttccctccctccctcccctctc
tcctccagggtacctccacccacgaaatttgacacgtgttccctccctcc
ctccctccctccctccctccctccttcagGGAGCCTCCACCCTCGAAGGG
TATGACTGTCAGAAGAATCGCGTCTCGGTCCACAACAGCACCCACTGGCG
AATCGATGAgtaaggagggagggaggggaggaaggaaggaaggaaggtag
aaaggagaaagggacgagggagggatggagggagggatggagaaagggag
gagaagagggaaggagtctgggaccaggactcagacatatccatgcttcc
tgacccctccctccctccctccctccctccctccctccctccctccctcc
ctccagGTATTTTCAAGGGGACATAACCGGACTCGGCTTCAAGTGGGCGC
AAACTCTTCAGgtccctccctccctccgtcccgccctctctccgtcccgc
cttccctccgtcccgccctccctccgtccctccctccctccatcccgccc
tccccccctgcctgcctgcctccctccctcctttcttcatcgcattgctg
ttgcttcactctcacatgttctctatctttgtattacatccttctccctc
cttccctcccttcctccctcatcgcagCTCATCACCCCTCTCCCTCTCTC
ATTTCCCTCCCCCTCCTCACGTGGCGACAAGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCAGGGGCGCATGAGCTGGCGTCCCTTGGAGGGCGCG
AGTGGGTATGAAGCCACCTACTTCGTTTTGGCCGCTTCAAgtaagaaagg
gagggagggagggagagagggagggaaagaaggagggaagggaacaggat
gatacccggatagtctatcatgtgaagatctcaacttacccttctttccc
tccctccctccctccctccctccctccctccctccctccctagGCTCCTA
CATCATCTTCTACTACTGTGCGCCTCTCTATCCTACCTCCTCCTACTGGT
CATCCTTCCTCTTGTACTCTCGATCGCCGGAGCCTCCCAAGAAAGGAATG
AAAAAAATGCAGCgtacgtccacccctccctccctccctccctccctcca
tccatccctctctctctctccctcccttcgcccctaacttactcactgac
gcaccgattcaacccgtttctccttccctccctccctcgtgccctccctc
cctccctctctctctctctccttcctttcagGACTCCTCCAAACGTTTGC
ATGGGACCAGCCTCTCAAGACGGTGAATCATCAGgtagggagggagggag
ggagggaatgagggagggagggaaggagggagggagggaaggagggaagg
agggaggttttgaatcggtgggtgagggagtaagttaggggcgaagggag
ggggggagggagggagggagggagagagggggagaagacgagagagagca
tgtctcgttttcccttctttgtgttttgtagttttaaacgcaacgttttt
aaccgctccttccttgcctccctctctccctccctccctcccaacacacc
tctagGACTGTGACTACAAGATCGTGCCTCCCCCTCCTTCCTAATCCTCC
TCTTCCTGATCCATCACCTCTTCCCCCTCCTCCCCCCACCCAACCGCCTT
CTCCTCCTCCTTCTTCTCTTTCACTCCCTCCCTCGTGTTCCATCACCGCG
CTTCCGCCTCCTTCCCTCCTCTCCTTCTTCCTTCAACGGGGAGAGGCACA
GCGAGTTGTAGATAAGATGTCGTCGATGTTACTTGTTTAAAGATTTTGAA
GAAAAGATCAATACCTCATACTCCCTTTTCTCTCTCCTTGTCTCTCTGGT
TCATTCTGCTTCTCGCACACATACATACACTCGCATGCTCTCTCTCCTTC
TTCCCCCTGCGTCTTCGAGGAGAAGGGAAAGGAGAAGAAAGACCACCCGA
CTTTCATCGATGGGCATGCATACGGTATACACATATGGTGGTATTTGAGT
CTGGAGGGAGGGAGGGATTGCATGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAGAGACCCTCCCCAAACTCCTTTTGGAAGGGACTGAAGAAGGTT
ATGATGGAATTTTGGTATTTGGCCTGTTCGGATGTGCATGAGTCAGAGAC
ATGAGAATTACTCGTGTATGATGGCTGGTGTGTGGAGAAGGGAAGTGGAG
ATAAAACGATGGTGGGGGGCATCCAGTAAGGGGCCTGCCGGGTATGTTCA
AAGTTTGTTCGTCTATCTGGAGTTCAGTGTAGAGACCTCGCGAGGGATGG
GGGGGGGGAGATGAGGGAGGAATGATGAGGAGGAGAGATGACATCGATTT
CTTCGGTTGTTGATGGTGAGGTAGCTGTAGAAAAGTAAGTGAGGGAGGGG
AGCAGGAGTGAAAATAGGAAAAGGGGTTGGAGTGATGTACAGTAGACCAC
TAAAGAAGCGAACATGTCGAGAAGAGCGCTGGCATACAAACGAGATGGAC
AGTAAATAGCACGACGTG
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protein sequence of NO06G00200.1

>NO06G00200.1-protein ID=NO06G00200.1-protein|Name=NO06G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MPRSSSLLLVVSLLLHSFLDPVQTQARAQARVEATKPTRADASTMDFLRD
SAREVMHCPGAFLGCILSAPCRATMACAAHCVTGTNMNLTCFLPCTQGND
QTAFTTFTNCVMKERASPDPGVDDVPNGGKCLDVESFVVPDWRISSLEGE
WFVVAGASTLEGYDCQKNRVSVHNSTHWRIDEYFQGDITGLGFKWAQTLQ
LITPLPLSFPSPSSRGDKEGGREGGREGGQGRMSWRPLEGASGYEATYFV
LAASSSYIIFYYCAPLYPTSSYWSSFLLYSRSPEPPKKGMKKMQRLLQTF
AWDQPLKTVNHQDCDYKIVPPPPS*
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Synonyms
Publications