NO06G00070, NO06G00070 (gene) Nannochloropsis oceanica

Overview
NameNO06G00070
Unique NameNO06G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1460
Alignment locationchr6:38177..39636 -

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Properties
Property NameValue
DescriptionSelenoprotein-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr6genomechr6:38177..39636 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR014912Sep15_SelM
Homology
BLAST of NO06G00070 vs. NCBI_GenBank
Match: EWM20456.1 (selenoprotein-like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 2.800e-28
Identity = 63/99 (63.64%), Postives = 83/99 (83.84%), Query Frame = 0
Query:   91 LEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEIVSIAQWTAESITEFIQENLHEEDDEKETLR 190
            L  S  +YVRAEI+LDE+FLR++P L SFL + +A AW+++G+L+VH++ GVRPNLQLF+  QTTPGEIVSI+QWTAES+ EF+ +NLHEEDDE+E  R
Sbjct:    1 LPPSLPQYVRAEINLDEYFLRLLPALASFLNTPEAIAWEETGILSVHYQHGVRPNLQLFAAGQTTPGEIVSISQWTAESLKEFLLDNLHEEDDEEEATR 99          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: CTP80890.1 (Bm7150 [Brugia malayi])

HSP 1 Score: 77.0 bits (188), Expect = 7.000e-11
Identity = 55/172 (31.98%), Postives = 85/172 (49.42%), Query Frame = 0
Query:    6 KGCCGASPRPSLFFLFLFVALATALRVVPSMASTQRALALETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEI---VSIAQWTAESITEFI 175
            K C G      + +L LF+ +   + +V S       L  +TC E+GFN E+L+CSSC  L        + LV DC +CC   D  E    KY RA I + E  L   P+ ++F++S   K W     + VH  +G  P ++L   +    GE+   ++I +W  ++ITEF+
Sbjct:   22 KTCSGTHSSNFMNYLQLFLQIVVMIPLVYS------ELDHQTCQERGFNSESLQCSSCADLPQF---HLDELVDDCNSCCR-KDYAEMEQEKYPRAHIEICECNLGRFPQAEAFVKSNMVKKW--GTCVKVHHVRGTLPTIKLLDAQ----GEVQKTMNIEKWDTDTITEFL 177          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: EJW88107.1 (hypothetical protein WUBG_00984 [Wuchereria bancrofti])

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-10
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 0
Query:   46 ETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEI---VSIAQWTAESITEFI 175
            +TC E+GFN E+L+CSSC  L        + LV DC +CC  +D +E    KY RA I + E  L   P+ ++F++S   K W     + VH  +G  P ++L   +    GE+   ++I +W  ++ITEF+
Sbjct:   15 QTCQERGFNSESLQCSSCADLPQF---HLDELVDDCNSCCR-NDYVEMEQAKYPRAYIEICECNLGRFPQAEAFVKSNMVKKW--GTCVKVHHVRGTLPTIKLLDAQ----GEVQKTMNIEKWDTDTITEFL 136          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: XP_020303914.1 (selenoprotein [Loa loa] >EFO27372.1 selenoprotein [Loa loa])

HSP 1 Score: 75.1 bits (183), Expect = 2.700e-10
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 0
Query:    8 CCGASPRPSLFFLFLFVALATALRVVPSMASTQRALALETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEI---VSIAQWTAESITEFI 175
            C GA    S++ L LF  L   L+ V S  + Q       C ++GFN E+L+CSSC +L          LV DC ACC   D +E    KY RA+I + E  L   P+ ++F++S   K W     + VH  +G  P ++L   +    GE+   ++I +W  ++ITEF+
Sbjct:    3 CPGAFSGRSVYQLQLF--LIVVLQFVYSELNRQ------VCQKRGFNSESLQCSSCAELPQF---HLSELVADCNACCR-KDYVETKQEKYPRAQIEICECNLGRFPQAEAFVKSNMVKKW--GTCVKVHHVRGTLPTIKLLDAQ----GEVQKTMNIEKWDTDTITEFL 154          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: XP_001892444.1 (15 kDa selenoprotein precursor [Brugia malayi])

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-10
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 0
Query:   46 ETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEI---VSIAQWTAESITEFI 175
            +TC E+GFN E+L+CSSC  L        + LV DC +CC   D  E    KY RA I + E  L   P+ ++F++S   K W     + VH  +G  P ++L   +    GE+   ++I +W  ++ITEF+
Sbjct:   12 QTCQERGFNSESLQCSSCADLPQF---HLDELVDDCNSCCR-KDYAEMEQEKYPRAHIEICECNLGRFPQAEAFVKSNMVKKW--GTCVKVHHVRGTLPTIKLLDAQ----GEVQKTMNIEKWDTDTITEFL 133          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: OZC09051.1 (Sep15/SelM redox domain protein [Onchocerca flexuosa])

HSP 1 Score: 73.2 bits (178), Expect = 1.000e-9
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = 0
Query:   46 ETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEIVSIAQWTAESITEFI 175
            + C E+GFN E+L+CSSC  L        + LV DC +CC   D  E    KY  A I + E  L   P+ ++F++S   K W     + VH  +G  P ++L    Q    +I++I +W  ++ITEF+
Sbjct:   35 QICQERGFNSESLQCSSCADLPQFY---LDRLVADCNSCCR-KDYAETEQKKYPMAHIEICECNLARFPQAEAFVKSSMVKKW--GACVKVHHVRGTLPTIKLLD-AQGEVQKIMNIEKWDTDTITEFL 156          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: CAR63555.1 (putative 15 kDa selenoprotein precursor [Angiostrongylus cantonensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-9
Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = 0
Query:   14 RPSLFFLFLFVALATALRVVPSMASTQRALALETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEIVSIAQWTAESITEFIQE 177
            R  L F+FL V+ A            +  + LE C   GF  ETLKCSSCEKL        E L  DC +CC  + +LE    KY  A + + E  L   P++++F++   A  W   G + V   +GVRP + L      T  + ++I +W  ++I++F+ +
Sbjct:    2 RVLLNFVFLIVSYAEI---------EEYKIPLEECSSHGFLPETLKCSSCEKLG---SYNLEMLTGDCMSCCAKEKELEHE--KYPMAHVEVCECNLGRFPQVEAFVREDMASQW--GGKVRVRHVRGVRPQIILKDANGVTK-QTLNIEKWDTDTISDFLNQ 147          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: EYC15326.1 (hypothetical protein Y032_0037g3458 [Ancylostoma ceylanicum])

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-8
Identity = 50/152 (32.89%), Postives = 78/152 (51.32%), Query Frame = 0
Query:   27 ATALRVVPSMASTQRALALETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACC--EDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEIVSIAQWTAESITEFIQE 177
            A A   + S    + +L+ E C   GF  ETLKCS+C KL+       E L+ DC ACC  E +D+ E    KY  A I + E  L   P++Q+F++   A  W   G + V   +GVRP ++L      T  + ++I +W  ++I +F+ +
Sbjct:    7 ALACFAMASAEVEEYSLSREECRSAGFVPETLKCSTCGKLSKF---NLEMLMSDCMACCTKEQEDEHE----KYPMAHIEVCECNLARFPQVQAFVRENMASHW--GGKVRVRQVRGVRPQIKLKDDAGITK-QTLNIEKWDTDTIKDFLNQ 148          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: EYC15327.1 (hypothetical protein Y032_0037g3458 [Ancylostoma ceylanicum])

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-8
Identity = 47/137 (34.31%), Postives = 73/137 (53.28%), Query Frame = 0
Query:   42 ALALETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACC--EDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEIVSIAQWTAESITEFIQE 177
            +L+ E C   GF  ETLKCS+C KL+       E L+ DC ACC  E +D+ E    KY  A I + E  L   P++Q+F++   A  W   G + V   +GVRP ++L      T  + ++I +W  ++I +F+ +
Sbjct:   10 SLSREECRSAGFVPETLKCSTCGKLSKF---NLEMLMSDCMACCTKEQEDEHE----KYPMAHIEVCECNLARFPQVQAFVRENMASHW--GGKVRVRQVRGVRPQIKLKDDAGITK-QTLNIEKWDTDTIKDFLNQ 136          
BLAST of NO06G00070 vs. NCBI_GenBank
Match: KHN77304.1 (15 kDa selenoprotein [Toxocara canis])

HSP 1 Score: 68.6 bits (166), Expect = 2.500e-8
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 0
Query:   44 ALETCLEKGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVRAEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFSREQTTPGEIVSIAQWTAESITEFI 175
            +L  C + GFN ETL+CSSC +L        + LV DC ACC  D+  E    KY  A I + E  L   P++Q+F++S     W     + V   +G  P ++L      T  + ++I +W  ++ITEF+
Sbjct:   28 SLSQCRDAGFNSETLQCSSCNELPQF---HLDQLVDDCNACCTPDES-ENQHEKYPLAHIEICECNLARFPQVQAFVKSDMVNQW--GSHVKVRHVRGTLPTIKLKDVYGETQ-QTMNIEKWDTDTITEFL 151          
The following BLAST results are available for this feature:
BLAST of NO06G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20456.12.800e-2863.64selenoprotein-like protein, partial [Nannochlorops... [more]
CTP80890.17.000e-1131.98Bm7150 [Brugia malayi][more]
EJW88107.11.200e-1034.85hypothetical protein WUBG_00984 [Wuchereria bancro... [more]
XP_020303914.12.700e-1033.53selenoprotein [Loa loa] >EFO27372.1 selenoprotein ... [more]
XP_001892444.13.500e-1034.8515 kDa selenoprotein precursor [Brugia malayi][more]
OZC09051.11.000e-934.11Sep15/SelM redox domain protein [Onchocerca flexuo... [more]
CAR63555.11.300e-931.90putative 15 kDa selenoprotein precursor [Angiostro... [more]
EYC15326.11.500e-832.89hypothetical protein Y032_0037g3458 [Ancylostoma c... [more]
EYC15327.11.500e-834.31hypothetical protein Y032_0037g3458 [Ancylostoma c... [more]
KHN77304.12.500e-833.5915 kDa selenoprotein [Toxocara canis][more]

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Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO06G00070.1NO06G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO06G00070.1NO06G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO06G00070 ID=NO06G00070|Name=NO06G00070|organism=Nannochloropsis oceanica|type=gene|length=1460bp
AGAAACACACAGCACCATCCACCGCCATTAGCTGCCATTCAGCCATGGTC
TTTCAAAGGAAAGGCTGCTGCGGCGCATCACCCCGCCCCTCCCTTTTCTT
CCTCTTCCTCTTCGTCGCCCTTGCCACTGCCCTTCGCGTAGTGCCTTCCA
TGGCGTCGACTCAACGGGCGCTGGCTCTGGAGACATGCCTGGAAAAGGGC
TTCAACCGAGAGACGCTCAAATGCTCGTCGTGCGAGAAGCTGGCAGGGGC
GGTGGGGAAGAAGGgtacgcatggggggcaagggagggaaggccgcaggg
aaagggaatgagtctagcgggcgggtacgcctcacttagaagtggcttcg
agtgtaattcgatgcctgtatgatgcttacatgaatgtgtttcattcacc
tctattctgcgtctctttccttcctccccttccctcgcttgtagGTGAGG
CCCTCGTTCAGGACTGCCAAGCGTGCTGCGAGGATGACGACGACTTGGAG
GCCAGCGCCGGCAAGgtacgtgaacctagatgcttgtccctttgataaag
agaggaaactgcttgtgcaatgacgagcaggtgtgctgctgctgctagtg
tcgtctagggctgctcatcttcctcacccttccccttcctcccttcgtcc
tcccccctctttcttgtctccagTACGTCCGCGCCGAAATCAGCCTCGAC
GAATTCTTCCTCCGCATGATTCCCGAGCTTCAATCTTTCCTCCAAAGCAA
GCAAGCCAAGGCCTGGAAACAGAGCGGGATGCTCGCCGTGCACgtatgtt
gtgccctccctccctccctcctccctttccctctctgctttgcatatgtg
cttctcgctatgtattcttttacttctaccttcactcctttcatcctttg
tacttcaggaaggctctttgtcccttaacctcgtcgcttctccctctctc
tttccctcactcactccctccctctctcccttcctccctcccttcctacc
tacctcgtctataaccagTTCCGGCAAGGTGTTCGACCGAACCTCCAGCT
TTTCTCGCGAGAACAAACCACGCCCGGAGAGATCGTGAGgtacgccagca
agcctcgccttccccttctctccctccctccctccctccctccctccatg
ctctccctctctcctcctttgagaataccaaaggccctctacttcgttgt
ttattttcaggaaaccatttctcataattctcacagccctttccttttgc
tttgcttccctccctctctccttcccttccctacatgcccagCATTGCGC
AATGGACGGCCGAGTCCATCACCGAATTTATTCAAGAAAATCTGCATGAG
GAGGATGATGAGAAAGAGACGCTGCGGGAGGAGTTGTAGAAGGCAATGGA
GGGACCGGGGGCCGTCGACTGCAAGTAATTGTTGTGAAAATAGAGGGAGG
AGGAGAGGGA
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protein sequence of NO06G00070.1

>NO06G00070.1-protein ID=NO06G00070.1-protein|Name=NO06G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MVFQRKGCCGASPRPSLFFLFLFVALATALRVVPSMASTQRALALETCLE
KGFNRETLKCSSCEKLAGAVGKKGEALVQDCQACCEDDDDLEASAGKYVR
AEISLDEFFLRMIPELQSFLQSKQAKAWKQSGMLAVHFRQGVRPNLQLFS
REQTTPGEIVSIAQWTAESITEFIQENLHEEDDEKETLREEL*
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Synonyms
Publications