NO05G05380, NO05G05380 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G05380 vs. NCBI_GenBank
Match: EWM27853.1 (Protein of unknown function DUF179, partial [Nannochloropsis gaditana]) HSP 1 Score: 272.7 bits (696), Expect = 1.400e-69 Identity = 141/182 (77.47%), Postives = 151/182 (82.97%), Query Frame = 0
Query: 120 DMLARIMQGAQQRRASSGEGGDWALYSSALRGGVVLVANPAVFLNRPPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGMGENEGIFMLHAYPELQKTTQVTNDGLCFGGREERREG--REDGTVSYGRYSF 300
DMLARIMQGAQQRRASSGEGGDWA+YSSALRGGVVLVANPAVFL PPA LASRF LP DLSL L GG QA+DNLANILPVVLLLGSG+GGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGG GE++GIFM+H YPEL++ TQVTNDGL FGG + RE G S R+ F
Sbjct: 67 DMLARIMQGAQQRRASSGEGGDWAVYSSALRGGVVLVANPAVFLAGPPAGLASRFLLPSDLSLGLFSSFGGGGQQAIDNLANILPVVLLLGSGSGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGTGESDGIFMIHTYPELERATQVTNDGLFFGGNYTAAQELVREQG-ASSSRFKF 247
BLAST of NO05G05380 vs. NCBI_GenBank
Match: CBJ30871.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 97.4 bits (241), Expect = 7.900e-17 Identity = 56/143 (39.16%), Postives = 77/143 (53.85%), Query Frame = 0
Query: 141 DWALYSSALRGGVVLVANPAVFLNRPPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLNVDSSGFKIQPVHLGGMGENEGIFMLHAYPELQKTTQVT-NDGLCFGGREE 283
+W + L+ G VL+A+P F R ++ +F L Q L G D A++LPVVLL+G G T GL+LNRRTG L+GDL D + F IQP+ LGG GI +H YPE++ ++ +GL F G E
Sbjct: 88 EWCKPTDVLQTGTVLLADPKAFTTRSHPKMLDKFGLAQPLP--------GSEQIPPDRAADLLPVVLLVGIDAGRTIGLMLNRRTGVLMGDLGNDFTSFMIQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNME 222
BLAST of NO05G05380 vs. NCBI_GenBank
Match: XP_005776358.1 (hypothetical protein EMIHUDRAFT_463594 [Emiliania huxleyi CCMP1516] >EOD23929.1 hypothetical protein EMIHUDRAFT_463594 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 82.8 bits (203), Expect = 2.000e-12 Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 0
Query: 143 ALYSSALRGGVVLVANPAVFLNRPPAELASRFFLP-QDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLNVDSSG-FKIQPVHLGGMGENEGIFMLHAYPELQKTTQVTNDGLCFGGREERREGREDGTVSYGRYSF 300
A + A G +L+ANPA F +R P F P +DL +DG D A +LPV+LLL G GG+S ++L RRTG L+GD+++DS G I P+ LGG + LH+ L+ + DGL GG E R D +++ R+ F
Sbjct: 112 AALADAPAPGRMLLANPAKFCSRNP------FARPVKDLGRFGLDGPVSPDEMPPDLTAQMLPVLLLLEHGEGGSSAVLLERRTGALMGDIDIDSFGCVAIAPLWLGGTQRQNALSALHSVEGLEGAAPL-RDGLWLGGWEAARPRVADSSLAAARFKF 263
BLAST of NO05G05380 vs. NCBI_GenBank
Match: GAX10080.1 (hypothetical protein FisN_2Lh349 [Fistulifera solaris]) HSP 1 Score: 77.8 bits (190), Expect = 6.500e-11 Identity = 60/168 (35.71%), Postives = 88/168 (52.38%), Query Frame = 0
Query: 141 DWALYSSALRGGVVLVANPAVFL-----NR--PPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSG-NGGTSGLVLNRRTGYLVGDLN--VDSSG-------FKIQPVHLGGMGE-NEGIFMLHAYPELQKTTQVTNDGLCFGG-REERREGRED 290
DWA + + G +L+ANP F NR P ++L +RF L LEL D A++LPV+L++ S GT ++LNRRTG+L+GDL +D G F IQP+ GG+ + G+ M+H P ++ Q+T DGL +GG E ++ ED
Sbjct: 117 DWARAADTVAPGTILLANPDYFCANFNGNRRVPSSDLMARFGLSLPPPLEL----------GPDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLFWGGDPTEAQDAMED 274
BLAST of NO05G05380 vs. NCBI_GenBank
Match: GAX26704.1 (hypothetical protein FisN_2Hh349 [Fistulifera solaris]) HSP 1 Score: 76.6 bits (187), Expect = 1.400e-10 Identity = 57/157 (36.31%), Postives = 82/157 (52.23%), Query Frame = 0
Query: 141 DWALYSSALRGGVVLVANPAVFL-----NR--PPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSG-NGGTSGLVLNRRTGYLVGDLN--VDSSG-------FKIQPVHLGGMGE-NEGIFMLHAYPELQKTTQVTNDGLCFGG 280
DWA + G +L+ANP F NR P ++L +RF L LEL D A++LPV+L++ S GT ++LNRRTG+L+GDL +D G F IQP+ GG+ + G+ M+H P ++ Q+T DGL +GG
Sbjct: 111 DWARAVDTVAPGTILLANPDYFCANFNGNRRVPSSDLLARFGLSLPPPLEL----------GPDRRADLLPVLLVVDSSKTKGTRAILLNRRTGHLLGDLEQPLDEGGSSPLLAKFCIQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTEDGLYWGG 257
BLAST of NO05G05380 vs. NCBI_GenBank
Match: OEU22940.1 (hypothetical protein FRACYDRAFT_233102 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 72.4 bits (176), Expect = 2.700e-9 Identity = 62/197 (31.47%), Postives = 86/197 (43.65%), Query Frame = 0
Query: 130 QQRRASSGEG-----------GDWALYSSALRGGVVLVANPAVFL---------NRPPAELASRFFL------PQDLSLELMDGLGGRSPQ--AVDNLANILPVVLLLGSGNGGTSGLVLNRRTGYLVGDLN---VDSSG---------------FKIQPVHLGGMGE-NEGIFMLHAYPELQKTTQVTNDGLCFGG 280
QQ+ S+G G DWA +R G VL+ANP F + + FL D SL GL P+ D A++LPVV+++ + G G++LNRRTGYL+GDL D S F IQP+ GG+ + G+ MLH P + Q+T DG+ +GG
Sbjct: 37 QQQGVSTGSGIADDDDKETIVEDWAKPMEGIRPGTVLIANPRKFCEDGDFGDSGSDDNESTGVKDFLKFGWSSKPDPSLLAKFGLTQPPPRHLGADRQADLLPVVIVVSTDGGQIQGVLLNRRTGYLLGDLEQPAEDGSSDDXXXXXDMAPILEKFCIQPLWFGGIDSLSVGLDMLHLCPTVNDAQQITEDGMYWGG 233
BLAST of NO05G05380 vs. NCBI_GenBank
Match: XP_002182980.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45716.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 64.3 bits (155), Expect = 7.400e-7 Identity = 53/178 (29.78%), Postives = 88/178 (49.44%), Query Frame = 0
Query: 129 AQQRRASSGE-GGDWALYSSALRGGVVLVANPAVFLN--------RPPAELASRFFLPQDLSLELMDGLGGRSPQAVDNLANILPVVLLLGSGNGG-TSGLVLNRRTGYLVGDL-----NVDSSG-----------FKIQPVHLGGMGE-NEGIFMLHAYPELQKTTQVTNDGLCFGG 280
A+ + S+G DW+ S+++ G+VL+ANP F + P +L ++F L +L D A++LPV++++ G G ++LNRRTGYL+GDL N+ S+ F IQP+ GG+ + G+ MLH P + ++++GL +GG
Sbjct: 128 ARSQDGSTGSVSTDWSEPVSSIQKGMVLLANPEQFCSDFGGGRRKMPSPKLLAKFGLTLPPPADL----------GPDRRADLLPVLIVVECGEGSRVRAVLLNRRTGYLLGDLEQADTNLGSTSSKKAPTPVLEKFCIQPLWFGGVDNVSAGLDMLHQCPTVPDAEPLSDEGLYWGG 295 The following BLAST results are available for this feature:
BLAST of NO05G05380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 7
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G05380 ID=NO05G05380|Name=NO05G05380|organism=Nannochloropsis oceanica|type=gene|length=3183bpback to top protein sequence of NO05G05380.2 >NO05G05380.2-protein ID=NO05G05380.2-protein|Name=NO05G05380.2|organism=Nannochloropsis oceanica|type=polypeptide|length=304bpback to top protein sequence of NO05G05380.1 >NO05G05380.1-protein ID=NO05G05380.1-protein|Name=NO05G05380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bpback to top Synonyms
Publications
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