NO05G05320, NO05G05320 (gene) Nannochloropsis oceanica

Overview
NameNO05G05320
Unique NameNO05G05320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length443
Alignment locationchr5:1416261..1416703 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger bed domain-containing 1-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1416261..1416703 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR008906HATC_dom_C
Homology
[Close]
BLAST of NO05G05320 vs. NCBI_GenBank
Match: XP_005852366.1 (zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526] >EKU23461.1 zinc finger bed domain-containing 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.7 bits (226), Expect = 2.000e-15
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 0 
Query:   35 NDMSHRALPTTMGPDLAAALNFDEVKLEDDLNVKSE-----------TGPNELGAVEFWLEVPEDCPALAIVVICYLCIPASSSALKRLLSQMGLIQSKLRNR----TIEKLIFTRAN 138
            ND+  RAL    G DL  AL+FD V LE+ ++V SE            G  ++  ++ W E+ EDCPAL IV + YL IPASSSA++RL SQ G I+S+LRNR    T+++LIFTR N
Sbjct:   11 NDIPVRALANVTGLDLGPALDFDGVSLENRVDVASEITKCLSKSMQAIGLGKVRTLDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNRMQPQTLDQLIFTRVN 128
[Close]
BLAST of NO05G05320 vs. NCBI_GenBank
Match: XP_005852719.1 (zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU23115.1 zinc finger bed domain-containing 1-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 90.1 bits (222), Expect = 5.700e-15
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 0 
Query:   35 NDMSHRALPTTMGPDLAAALNFDEVKLEDDLNVKSE-----------TGPNELGAVEFWLEVPEDCPALAIVVICYLCIPASSSALKRLLSQMGLIQSKLRNR----TIEKLIFTRAN 138
            ND+   AL    G DL  AL+FD V LE+ ++V SE            G  ++  ++ W E+ EDCPAL IV + YL IPASSSA++RL SQ G I+S+LRNR    T+++LIFTR N
Sbjct:  117 NDVPVHALANVTGLDLGPALDFDGVSLENGVDVASEITKCLSKSMQAIGLGKVRTLDLWWELHEDCPALIIVDMHYLAIPASSSAVERLFSQTGQIKSRLRNRMQPQTLDQLIFTRVN 234
The following BLAST results are available for this feature:
BLAST of NO05G05320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005852366.12.000e-1547.46zinc finger bed domain-containing 1-like protein [... [more]
XP_005852719.15.700e-1546.61zinc finger bed domain-containing 1-like protein, ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05320.1NO05G05320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05320.1NO05G05320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05320 ID=NO05G05320|Name=NO05G05320|organism=Nannochloropsis oceanica|type=gene|length=443bp
ATGTCGGTTACATCGACCCCATCCGATAGTTTGGTTTTAGAACTCGTCCG
AGTTCGAGTTCGTATTCGATCGGCGGCGCCAAACGTTAGGGCCAAGCAAT
TCAACGACATGTCGCATAGGGCTCTTCCAACGACGATGGGGCCTGATCTG
GCGGCCGCACTGAATTTTGATGAGGTGAAGCTGGAGGACGATTTGAATGT
GAAGTCGGAGACAGgtacctccgcaaggaagtggcgaacatagGCCCCAA
CGAGCTTGGCGCCGTGGAGTTCTGGTTGGAAGTTCCTGAGGACTGTCCTG
CCCTCGCCATCGTGGTCATATGCTACCTCTGCATTCCCGCCTCGTCGTCT
GCTTTGAAGCGGTTGTTATCACAAATGGGGCTGATCCAGTCGAAGCTGCG
GAATCGGACGATCGAGAAACTCATTTTCACCCGCGCCAACTAA
back to top

protein sequence of NO05G05320.1

>NO05G05320.1-protein ID=NO05G05320.1-protein|Name=NO05G05320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MSVTSTPSDSLVLELVRVRVRIRSAAPNVRAKQFNDMSHRALPTTMGPDL
AAALNFDEVKLEDDLNVKSETGPNELGAVEFWLEVPEDCPALAIVVICYL
CIPASSSALKRLLSQMGLIQSKLRNRTIEKLIFTRAN*
back to top
Synonyms
Publications