NO05G05290, NO05G05290 (gene) Nannochloropsis oceanica

Overview
NameNO05G05290
Unique NameNO05G05290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3770
Alignment locationchr5:1404751..1408520 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1404751..1408520 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003691CrcB
Homology
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BLAST of NO05G05290 vs. NCBI_GenBank
Match: EWM27866.1 (hypothetical protein Naga_100094g3 [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 3.100e-106
Identity = 350/574 (60.98%), Postives = 411/574 (71.60%), Query Frame = 0 
Query:   11 PVEFSSPPRRRIKRSHRSWVTGRVVLGIITFSIIGNMTRLELEKYITQLDARQGNIESSTYAAILANLLGCFIMGFMYESRAFLEKKLHGILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFTAMTGAATSYLALLMGMDLATGFKRIQILEEPPKERQNPLSLPPSLPPSPTLGEDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRFGPLAEELAGAGAVLVERHSISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGAAALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALRPVLLRFPLQTFAANSLGSLLSALLAVLVPLARTSGRLETAHVMKAISMGLCGGLSTYSTFALELHKLPTDCAWVYALTTFGTTQ 585
            PV  ++   +RI R+HRSWVT RVV GII FS+IGN+ R+ELE+YI QLDARQGNI+SS Y +ILANLLGCFIMG +YE R FLE+ LHGILSFP +PDA SLYVAITTW+CGSITTYS WN+VVA R+V DSF YG+F+AMTGAAT+YLALL GMD+ +GF R+Q++E+  K+     + PPSLP  P                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXX   FGPL EELA +GA L+E H   S                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I++  + PG +P  T +D+++EYS+Y F KPNQRDAFIL E++ +  GAA LL +A + I++ E+S + P WLSCLFAPLG A+RY+LA+ MA+H  +  +L  FPLQTF AN LG+ LSA    ++P+ +  G   TAH+MKA+ +G  G LSTYSTFALELHKLPT  AW YAL TF TTQ
Sbjct:   67 PVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKK-----ASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTWLTAWLGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLFGPLPEELAASGAALMEPHRYIS-------------------PERKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIQMQAQPPGFNP--TEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQ 614
[Close]
BLAST of NO05G05290 vs. NCBI_GenBank
Match: XP_005856150.1 (hypothetical protein NGA_0249010 [Nannochloropsis gaditana CCMP526] >EKU20218.1 hypothetical protein NGA_0249010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 307.0 bits (785), Expect = 1.400e-79
Identity = 301/494 (60.93%), Postives = 356/494 (72.06%), Query Frame = 0 
Query:   11 PVEFSSPPRRRIKRSHRSWVTGRVVLGIITFSIIGNMTRLELEKYITQLDARQGNIESSTYAAILANLLGCFIMGFMYESRAFLEKKLHGILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFTAMTGAATSYLALLMGMDLATGFKRIQILEEPPKERQNPLSLPPSLPPSPTLGEDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRFGPLAEELAGAGAVLVERHSISSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGAAALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALRPVLL 505
            PV  ++   +RI R+HRSWVT RVV GII FS+IGN+ R+ELE+YI QLDARQGNI+SS Y +ILANLLGCFIMG +YE R FLE+ LHGILSFP +PDA SLYVAITTW+CGSITTYS WN+VVA R+V DSF YG+F+AMTGAAT+YLALL GMD+ +GF R+Q++E+  K+     + PPSLP  P                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXX   FGPL EELA +GA L+E H   S                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I++  + PG +P  T +D+++EYS+Y F KPNQRDAFIL E++ +  GAA LL +A + I++ E+S + P WLSCLFAPLG A+RY+LA+ MA+H A+  +++
Sbjct:   67 PVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKK-----ASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTWLTAWLGLRXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLFGPLPEELAASGAALMEPHRYIS-------------------PERKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIQMQAQPPGFNP--TEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPAIAQLII 534
[Close]
BLAST of NO05G05290 vs. NCBI_GenBank
Match: XP_005855500.1 (hypothetical protein NGA_0249020 [Nannochloropsis gaditana CCMP526] >EKU20858.1 hypothetical protein NGA_0249020 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 110.2 bits (274), Expect = 2.600e-20
Identity = 51/103 (49.51%), Postives = 77/103 (74.76%), Query Frame = 0 
Query:  402 IELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGAAALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALRPVLL 505
            I++  + PG +P  T +D+++EYS+Y F KPNQRDAFIL E++ +  GAA LL +A + I++ E+S + P WLSCLFAPLG A+RY+LA+ MA+H A+  +++
Sbjct:   51 IQMQAQPPGFNP--TEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPAIAQLII 151
[Close]
BLAST of NO05G05290 vs. NCBI_GenBank
Match: PRP82832.1 (hypothetical protein PROFUN_04695 [Planoprotostelium fungivorum])

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-8
Identity = 50/149 (33.56%), Postives = 73/149 (48.99%), Query Frame = 0 
Query:   32 GRVVLGIITFSIIGNMTRLELEKYITQLDARQGNI-----------ESSTYAAILANLLGCFIMGFMYESRAFLEKKLHGILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFTAMTGAATSYLALLMGMDLA 170
            G++ L +  FSIIG +TR+ LE+ I  LD    N+           +S  Y     N+LGC +MGF+ +   +L+K +            PS+YV +TT LCGSITT+SSW+      V    +       + G AT Y   ++G  LA
Sbjct:   23 GQIAL-VSLFSIIGVLTRIGLEQ-IFLLDKTVTNVPIQRIVHTEQQKSPVYFDFWPNVLGCLLMGFIIKQDFWLKKSI------------PSVYVGLTTGLCGSITTFSSWSYEATVVVFRQEYTNYFLVLLIGYATCYATFILGTHLA 157
The following BLAST results are available for this feature:
BLAST of NO05G05290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
EWM27866.13.100e-10660.98hypothetical protein Naga_100094g3 [Nannochloropsi... [more]
XP_005856150.11.400e-7960.93hypothetical protein NGA_0249010 [Nannochloropsis ... [more]
XP_005855500.12.600e-2049.51hypothetical protein NGA_0249020 [Nannochloropsis ... [more]
PRP82832.11.700e-833.56hypothetical protein PROFUN_04695 [Planoprotosteli... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003313NSK003313Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05290.1NO05G05290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G05290.2NO05G05290.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100094g3gene2693Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05290.1NO05G05290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G05290.2NO05G05290.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05290 ID=NO05G05290|Name=NO05G05290|organism=Nannochloropsis oceanica|type=gene|length=3770bp
ATGGCAACCACTTCCACATTGACCTTGGTGCCGGTGGAGTTCTCGTCGCC
TCCACGGCGGCGGATCAAACGGgtaggttcacggcccgcctattcatttc
ctctctccctccctgcatatgttgcatcaaactaacttcctttatatgtt
tcccttccctcagTCCCACCGCTCCTGGGTCACGGGTCGCGTAGTGCTCG
GTATCATCACCTTTTCCATCATCGGGAATATGACGAGGCTGGAATTGGAA
AAGTATATCACGCAACTTGATgtaagtaggctgggaaaaagggaggaggg
caggccccaaaaatgtggaatcgaggataaatgtcaagtgtcatagtcca
ggtcaaagaatatgaatagtttcaatcatttcatgtgttgaaaatgccct
gcatcattcaccgaattcctcgattttctctccccccctctcctcctctg
cagGCCCGGCAAGGCAACATCGAGAGCTCCACGTACGCCGCTATCCTCGC
CAACCTCCTAGGATGTTTCATCATGGGATTTATGTACGAGAGTAGGgtaa
gtcatcactcgcgaaagccacagactccctcttatcatcgctgtcatttc
ctcaaaaagattagacttcctctcgtcaaagctggctttctttcctctcc
cggcacctggacaaccgtgatggttgaccgcccgacccccctgtcatctc
accctccctcccgtcctccttcccgcagGCGTTCCTCGAAAAGAAGCTAC
ACGGCATCCTCTCCTTTCCCGATGTGCCGGACGCCCCGTCCCTGTACGTC
GCAATCACCACCTGGCTCTGTGGCAGCATCACGACCTACAGCTCGTGGAA
CACAGgtggacccctccctccctccctctctcattcccttaccacatcct
cccctcacatacaccctccctcccttcccctgctcgtcagTGGTGGCTAC
GCGGGTCGTGGAAGACTCTTTTTGCTATGGCCTCTTCACTGCCATGACCG
GTGCCGCCACCTCCTACCTCGCGTTGCTCATGGgtaagccaagccagccc
tccttccctccctctcctcctccctacctttcttccttcctccctccatt
cctcgttttggccgcatcgctcacccactcactcccttccttacccgctc
cctccctccctccctcctagGCATGGATCTCGCTACTGGCTTCAAGCGCA
TCCAAATTTTGGAGGAACCGCCAAAGGAACGACAAAACCCTCTCTCCCTC
CCTCCCTCCCTTCCTCCCTCCCCCACCTTGGGCGAGGATGGCCTGCCTCC
TCCTCTTCCTCCTCCTCCCCCTCCTTCCTACCTGCGTCTCGACGGTCCGC
CGCCGGGGCCTCTGGCGGAGGAAGAGGAGGTGGGCGACTTGGTGGAGAGG
GAGGAGGAGGCAGCGGAGGAGATGGAGGAGgcccgaaggaggagggaagg
ggggaggaagggggggggaggcgcagtagcagtagcagtgcgggcatatt
tagggcgctgccaaagGGAGGAGGAGGAGGGGGAGGAGGAGGAGGAGGGG
GAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGGTCATGGCTGACA
GGATGGTTTGGGGATGGAGAAGGATGGGGTCGCAGGAAGGGGAGCGAGGA
GGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGAGGAGGG
AGGGATCTACGAGGTTCGGTCCTTTGGCAGAGGAGCTGgtacgtcctggg
gagcggaagagcgggaaggagggagggagggagggagggagggagaccgt
acagtgagagccagcaaatggagagcaatgactgcaagcgtcacgctcaa
aattaatcttttccgtcttacacgctctctctctccatctaccccctcct
tttttcccttccctccctcccatcccatccctccccaccctttccatacc
tcccccctcttcttcctcctcagGCAGGAGCGGGCGCAGTACTCGTCGAG
CGGCACAGCATATCTTCTTCGGCCTCCCTCCCTTCCTCCCTCCCTTCCTC
CCTCCCTTCGTCCTTCCCAGCGGCTGGGGAATCGCCTACTCCTCCGGGAG
GAGATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGG
GATCGAGCTATCGATGAAACGCCCTGGGGTGTCGCCTCCATACACAGgtc
agcagcagcggcagctattttctcggtctagcatggaccgtggatatgca
cacctcaccttccctccctccctccctctatccctccctccctccctccc
tccctccctccctccccagGCGAGGACGAGGAGATCGAGTATTCTGTGTA
CGGTTTCGCGAAGCCCAACCAGCGAGACGCCTTCATCCTCAGCGAGCTCG
CGCTCTTTTTTGTGGGGGCAGCTGCCCTTCTGGGGGTGGCAGGGGTGATG
ATAAGAAGgtgaggaagggagggagggagggagggagagagtactatggt
gccgaagcatgcgggatcaagaacctcaatggctcctcccttccttccct
ccttccctccctccctccctccctccctccctccctccctcagCACGGAG
ACCTCGGCGGTGGCACCTGTGTGGCTCTCGTGCCTCTTCGCTCCCCTCGG
CGTGGCCATCCGCTATCTGCTGGCTATCGGCATGGCCCGACACCAGgtga
ggacgggagggaaggagggagggagggagggaagtgatcacatctgtccg
aaagcttgcctactgaggtgtacttcccaatccatgtcctccctccctcc
ctcccttcctcccttcttccccccctccccccctccctctccccctccct
ccctcctgcagGCCCTCCGGCCAGTCCTTCTCCGCTTCCCCCTCCAGACA
TTCGCCGCCAACTCTCTGGGTTCCCTCCTCTCTGCCCTCCTGGCCGTGCT
CGTGCCCCTGGCCAGGACAAGTGGACGTCTCGAGACGGCCCATGTGATGA
AGGCGATCAGgtgggtagggaggaagggggggagggggagagggagggag
ggagggagggagggagggaggaaaggaaaggggatgctttacctttggtc
atgcacttcacacgcccacaagcaggaatcccgtctcccttcttccctcc
ctccctccctccctccctccctccctccctccttagCATGGGCCTGTGCG
GGGGACTTAGTACCTACTCCACGTTTGCGCTGGAGCTGCATAAGCTTCCG
ACAGACTGCGCCTGGGTTTATGCCCTAACCACCTTCGGCACCACGCAGGT
AGGGAGGGATGGAGAGAGGGAGGAAGGGAGGGAGAAGAGGAGGGGACATG
AGGGTGGGGGAAAGTGGGCGGATAGACGTAGTGGTTCATCTTGTGAGGTA
TCTCCTTTCATCTCCTTTCGCCCTCCCTCCCTTTCTCCCTCCCTCCCTCC
CTCCCTTACTTACTTACTTCCTTCCCTTGTGCTGAACCAGCTTGCGGCCC
AGCTCATTTTGGCGACGCACAAGTGGGGCCTGTGGTGAGACTGTAGAAAG
AAGGGAGGGGGAGGGAGGAAAATGAGGGGGGGGATAGGAAGGTGGGGAGG
AGAAGGAGAGGGAAGAGGAGGAGGAGGGGAGAGGGGGAGGAGGAAAGGGA
GAAGAAGAAGGAGGAGGAGGGGGAGGAGGAAGGGGAGGAAGAGAGGGAGG
AAAGGAAAAGAGGAGGAGGA
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protein sequence of NO05G05290.1

>NO05G05290.1-protein ID=NO05G05290.1-protein|Name=NO05G05290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MATTSTLTLVPVEFSSPPRRRIKRSHRSWVTGRVVLGIITFSIIGNMTRL
ELEKYITQLDARQGNIESSTYAAILANLLGCFIMGFMYESRAFLEKKLHG
ILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFT
AMTGAATSYLALLMGMDLATGFKRIQILEEPPKERQNPLSLPPSLPPSPT
LGEDGLPPPLPPPPPPSYLRLDGPPPGPLAEEEEVGDLVEREEEAAEEME
EGGGGGGGGGGGGGGGGGGGGGGGGSWLTGWFGDGEGWGRRKGSEEEGEE
EEEEEEEEEGRREGSTRFGPLAEELAGAGAVLVERHSISSSASLPSSLPS
SLPSSFPAAGESPTPPGGDRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGR
GIELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGA
AALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALR
PVLLRFPLQTFAANSLGSLLSALLAVLVPLARTSGRLETAHVMKAISMGL
CGGLSTYSTFALELHKLPTDCAWVYALTTFGTTQLAAQLILATHKWGLW*
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protein sequence of NO05G05290.2

>NO05G05290.2-protein ID=NO05G05290.2-protein|Name=NO05G05290.2|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MATTSTLTLVPVEFSSPPRRRIKRSHRSWVTGRVVLGIITFSIIGNMTRL
ELEKYITQLDARQGNIESSTYAAILANLLGCFIMGFMYESRAFLEKKLHG
ILSFPDVPDAPSLYVAITTWLCGSITTYSSWNTVVATRVVEDSFCYGLFT
AMTGAATSYLALLMGMDLATGFKRIQILEEPPKERQNPLSLPPSLPPSPT
LGEDGLPPPLPPPPPPSYLRLDGPPPGPLAEEEEVGDLVEREEEAAEEME
EGGGGGGGGGGGGGGGGGGGGGGGGSWLTGWFGDGEGWGRRKGSEEEGEE
EEEEEEEEEGRREGSTRFGPLAEELAGAGAVLVERHSISSSASLPSSLPS
SLPSSFPAAGESPTPPGGDRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGR
GIELSMKRPGVSPPYTGEDEEIEYSVYGFAKPNQRDAFILSELALFFVGA
AALLGVAGVMIRSTETSAVAPVWLSCLFAPLGVAIRYLLAIGMARHQALR
PVLLRFPLQTFAANSLGSLLSALLAVLVPLARTSGRLETAHVMKAISMGL
CGGLSTYSTFALELHKLPTDCAWVYALTTFGTTQVGRDGEREEGREKRRG
HEGGGKWADRRSGSSCEVSPFISFRPPSLSPSLPPSLTYLLPSLVLNQLA
AQLILATHKWGLW*
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Synonyms
Publications