NO05G05250, NO05G05250 (gene) Nannochloropsis oceanica

Overview
NameNO05G05250
Unique NameNO05G05250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1640
Alignment locationchr5:1395559..1397198 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1395559..1397198 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO05G05250 vs. NCBI_GenBank
Match: XP_005853981.1 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [Nannochloropsis gaditana CCMP526] >EKU22379.1 ATP-binding cassette, subfamily C (CFTR/MRP), member 1 [Nannochloropsis gaditana CCMP526] >EWM27876.1 Ankyrin repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 339.3 bits (869), Expect = 1.700e-89
Identity = 232/425 (54.59%), Postives = 263/425 (61.88%), Query Frame = 0 
Query:    9 KEKGFLASFLFHKPTREELLRKGDLPSLARLLRKQGPEKFLNTPLDGDGNTPLIMAAGRGSYRVVQWLVSQKGINLDARNRFGWTALYEAAGTGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVLVRAEKNWKALQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNKTDLPACLRWQVEEGVGEGGHVG--FGWEEMEDDWLEVHPAVFSKRGPRVGRRRREGTGAGSWVLGYIWRNKTLTNLAMGRTSGRLKARAGSRKKPRWVVRKE 432
            K++G   S L  KP+REEL+RKGDLP+L +LLRKQG +  LN PLD +GNTPLI+AA +GS++VVQWL++Q+G+N++ARNRFGWTALYEAAGTGHRH+L+RLVQAGADPTIPATSWPRH PSQMA+QMGWNACV+VLV+AEK W   ++                              XXXXXXXXXX                                                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   + KTDLPACLRWQVEEGVGEGGH G    WEE E+DWLEVHPAVFSKRGPRVGRRRREG GAGSWVLG + RNKTL NLA GRT  R+KARAGSR+ PRWVV+KE
Sbjct:    6 KKQGLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKK---------------------------EDRXXXXXXXXXXEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 403
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BLAST of NO05G05250 vs. NCBI_GenBank
Match: XP_005856146.1 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1, partial [Nannochloropsis gaditana CCMP526] >EKU20214.1 ATP-binding cassette, subfamily C (CFTR/MRP), member 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 337.0 bits (863), Expect = 8.400e-89
Identity = 231/422 (54.74%), Postives = 260/422 (61.61%), Query Frame = 0 
Query:   12 GFLASFLFHKPTREELLRKGDLPSLARLLRKQGPEKFLNTPLDGDGNTPLIMAAGRGSYRVVQWLVSQKGINLDARNRFGWTALYEAAGTGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVLVRAEKNWKALQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNKTDLPACLRWQVEEGVGEGGHVG--FGWEEMEDDWLEVHPAVFSKRGPRVGRRRREGTGAGSWVLGYIWRNKTLTNLAMGRTSGRLKARAGSRKKPRWVVRKE 432
            G   S L  KP+REEL+RKGDLP+L +LLRKQG +  LN PLD +GNTPLI+AA +GS++VVQWL++Q+G+N++ARNRFGWTALYEAAGTGHRH+L+RLVQAGADPTIPATSWPRH PSQMA+QMGWNACV+VLV+AEK W   ++                              XXXXXXXXXX                                                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                   + KTDLPACLRWQVEEGVGEGGH G    WEE E+DWLEVHPAVFSKRGPRVGRRRREG GAGSWVLG + RNKTL NLA GRT  R+KARAGSR+ PRWVV+KE
Sbjct: 1598 GLFLSLLSRKPSREELVRKGDLPALTKLLRKQGVDNTLNAPLDHEGNTPLILAARKGSFKVVQWLLAQEGLNMNARNRFGWTALYEAAGTGHRHILDRLVQAGADPTIPATSWPRHTPSQMARQMGWNACVDVLVKAEKMWAERKK---------------------------EDRXXXXXXXXXXEVMGLSEHPALSGTVGGDEKTTAELSSSTGTKLAAPGTRMGKEVAARSLPSSTTRPVSESGGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVARLAGPTGVASSKTSSNHVEATQTLSPAPPTTPSKKTDLPACLRWQVEEGVGEGGHEGRWGAWEEAEEDWLEVHPAVFSKRGPRVGRRRREGGGAGSWVLGCLRRNKTLMNLATGRTGERIKARAGSRRNPRWVVQKE 1992
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BLAST of NO05G05250 vs. NCBI_GenBank
Match: XP_009410555.1 (PREDICTED: ankyrin-1-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 69.3 bits (168), Expect = 3.300e-8
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 0 
Query:   54 DGDGNTPLIMAAGRGSYRVVQWLVSQKGINLDARNRFGWTALYEAAGTGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVLVRAE 150
            D +G TP+++AAG+G  R V+ LV + G   DAR+R G TALY AA  G    +  L++ GAD  I AT+  R  P  +A+  G    VE+L R E
Sbjct:  207 DAEGRTPVMVAAGKGHLRCVRELVEKWGAEKDARSRDGRTALYRAASNGDADTVAALLEMGADAGI-ATARGR-TPLDVARDKGHQEVVELLERGE 300
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BLAST of NO05G05250 vs. NCBI_GenBank
Match: PSN37721.1 (hypothetical protein C0J52_24150 [Blattella germanica])

HSP 1 Score: 65.5 bits (158), Expect = 4.700e-7
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 0 
Query:   31 GDLPSLARLLRKQGPEKFLNTPLDGDGNTPLIMAAGRGSYRVVQWLVSQ-KGINLDARNRFGWTALYEAAGTGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVL 146
            G LP L  + +  G +  +N P D +GNTPL  AA  G   V+ +++SQ  G+ +DARN  G+T L +AA  G     + L+ AGA PT+  T        Q A+  G   C EV+
Sbjct:   23 GSLPMLEAITQLPGLD--INKP-DNEGNTPLHFAAQAGHVEVINFMLSQCTGVEVDARNDLGFTPLMKAALQGRTKCAKLLLFAGASPTLRDTGRGLRA-EQWARFCGRYVCAEVI 134
The following BLAST results are available for this feature:
BLAST of NO05G05250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005853981.11.700e-8954.59ATP-binding cassette, subfamily C (CFTR/MRP), memb... [more]
XP_005856146.18.400e-8954.74ATP-binding cassette, subfamily C (CFTR/MRP), memb... [more]
XP_009410555.13.300e-842.71PREDICTED: ankyrin-1-like [Musa acuminata subsp. m... [more]
PSN37721.14.700e-737.07hypothetical protein C0J52_24150 [Blattella german... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05250.1NO05G05250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05250.1NO05G05250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05250 ID=NO05G05250|Name=NO05G05250|organism=Nannochloropsis oceanica|type=gene|length=1640bp
ACAGGCAAGTTCAGCTTCGACCTCCCTCCCTTGTCTCACTGATATCCATC
CCACTGAGCCCACACGCCCAGCCCGCCGCCGCTGCCCGCAGCAGCGGCAA
TAGGAGCAACACCAGCTGAAAGCTTCAATAACTTGTGTGCGAGCAAGTCC
ATGTCGCATATTCGGAACTGCCAGAAGGAAAAGGGCTTCTTGGCCTCTTT
CCTCTTCCACAAGCCCACCCGGGAGGAGCTCTTGCGCAAGGGCGATTTGC
CATCCCTGGCCCGGTTGCTGCGGAAGCAAGGGCCCGAAAAATTCTTGAAT
ACCCCTCTGGACGGAGATGGGAACACACCCTTGATCATGGCGGCGGGCCG
GGGATCCTACCGCGTGGTGCAATGGCTGGTGTCTCAAAAGGGGATCAACT
TGGATGCTCGCAACAGgtacgcaagggaggatggaagaggtggggagagc
gtatgtatggggagggaacgatttgcatgctggctatagtgttcgtggta
gaaaccccagaaggaacaggtaccgcatctctgggtcttctcgcgttcaa
ctgatccctcccgccctccctcccgccctccctccctccctccatcttcc
tattccctagATTCGGATGGACCGCCTTGTACGAAGCTGCGGGCACGGGC
CATCGACATGTGCTTGAGCGACTGGTACAGGCAGGAGCAGACCCCACCAT
CCCTGCGACATCGTGGCCCAGGCATGTCCCTTCGCAGATGGCGCAGCAGA
TGGGTTGGAACGCGTGTGTGGAGGTGTTGGTCCGGGCCGAGAAAAATTGG
AAGGCTTTGCAGAGACGGAAAGCGGCGATGCAGGAGGAGGAGACCAAGGC
AGAGAGTGTACTGGGAACATCACAGACTCCAGCAACAGCAGCAGCAGCAG
CAGCAGCAGCAAGAGAGGCGACGGGGGAGAAGGGCTCGTCGGAGAAAAAC
GAGGGCGACCTTTCTTCCTCCTCCTCTATCTCGTCCTCATTGGCTGTAGC
TGCTGGAACGGCAGGAAAGACGAGGAACGGCGACAACAATGGCTTTTTCT
CCTCCTCCTCGTCTACGAGCAACGGTAAAGATGTGGCAGCAGCAGCAGCA
GGAGGAACAGCAAAGGAGGCCGTCTCCAGCGCCATTATTACTCCCTCCCC
TCCTACCTCCCCTTCTTCCTTCATTTTTTCCTCGTCTTCCTCCTCCTCCT
CCAGCCCCATCAATCCTGTCTCTGCTTCTGACGCCGTAGCTCCTCCTTCT
GCTCCTGCTCCTGCAGCGTCTGACAAGGTCAAGGAAGAGACAGTAGCAGC
ACTGGCCAGCCCCCCTCCCCCCACCCCCACCAACAAGACAGATCTCCCTG
CATGCCTTCGATGGCAGGTGGAGGAGGGCGTGGGTGAGGGAGGGCACGTA
GGGTTTGGGTGGGAGGAAATGGAAGATGATTGGTTGGAGGTGCACCCGGC
TGTCTTTTCGAAGAGGGGGCCGAGGGTGGGGAGGCGAAGGAGGGAGGGGA
CAGGGGCGGGCTCGTGGGTACTGGGGTACATATGGAGGAATAAGACGTTG
ACAAACCTGGCGATGGGGAGGACGAGCGGCCGGCTCAAGGCCCGGGCGGG
CTCGAGGAAAAAGCCGCGGTGGGTGGTGCGGAAGGAGTAG
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protein sequence of NO05G05250.1

>NO05G05250.1-protein ID=NO05G05250.1-protein|Name=NO05G05250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MSHIRNCQKEKGFLASFLFHKPTREELLRKGDLPSLARLLRKQGPEKFLN
TPLDGDGNTPLIMAAGRGSYRVVQWLVSQKGINLDARNRFGWTALYEAAG
TGHRHVLERLVQAGADPTIPATSWPRHVPSQMAQQMGWNACVEVLVRAEK
NWKALQRRKAAMQEEETKAESVLGTSQTPATAAAAAAAAREATGEKGSSE
KNEGDLSSSSSISSSLAVAAGTAGKTRNGDNNGFFSSSSSTSNGKDVAAA
AAGGTAKEAVSSAIITPSPPTSPSSFIFSSSSSSSSSPINPVSASDAVAP
PSAPAPAASDKVKEETVAALASPPPPTPTNKTDLPACLRWQVEEGVGEGG
HVGFGWEEMEDDWLEVHPAVFSKRGPRVGRRRREGTGAGSWVLGYIWRNK
TLTNLAMGRTSGRLKARAGSRKKPRWVVRKE*
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Synonyms
Publications