NO05G05070, NO05G05070 (gene) Nannochloropsis oceanica

Overview
NameNO05G05070
Unique NameNO05G05070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2092
Alignment locationchr5:1323390..1325481 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1323390..1325481 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: PNW75098.1 (hypothetical protein CHLRE_12g496550v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 72.0 bits (175), Expect = 4.200e-9
Identity = 31/47 (65.96%), Postives = 40/47 (85.11%), Query Frame = 0 
Query:  313 AESKLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGF 360
            A+ K+R+ DG VV++KGEK++IEKI  +WDGGSRGK+ TKGKRG GF
Sbjct:  242 AQKKVRYLDGRVVSNKGEKFIIEKIGEEWDGGSRGKVYTKGKRGKGF 288
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: KXZ47386.1 (hypothetical protein GPECTOR_35g824 [Gonium pectorale])

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-8
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:  316 KLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV 361
            K+R+ DG VV++KGEK++IEK   DWDGGSRGK+ TKGKRG GFV
Sbjct:  122 KVRYLDGRVVSTKGEKFIIEKTGEDWDGGSRGKVFTKGKRGKGFV 166
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: XP_002947940.1 (hypothetical protein VOLCADRAFT_88352 [Volvox carteri f. nagariensis] >EFJ50928.1 hypothetical protein VOLCADRAFT_88352 [Volvox carteri f. nagariensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-8
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 0 
Query:  316 KLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV 361
            K+R+ DG VV++KGEK++IEK + +WDGGSRGK+ TKGKRG GF+
Sbjct:  244 KVRYLDGRVVSTKGEKFIIEKTSEEWDGGSRGKVYTKGKRGKGFI 288
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: PNH10884.1 (hypothetical protein TSOC_002378 [Tetrabaena socialis])

HSP 1 Score: 69.3 bits (168), Expect = 2.700e-8
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:  314 ESKLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGF 360
            ESK+R+ +G +V+ KGEK++IEK   +WDGGSRGK+ TKGKRG GF
Sbjct:  260 ESKVRYLEGRIVSQKGEKFIIEKTAEEWDGGSRGKVFTKGKRGKGF 305
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: CBJ32294.1 (hypothetical protein Esi_0327_0015 [Ectocarpus siliculosus])

HSP 1 Score: 68.6 bits (166), Expect = 4.700e-8
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:  318 RFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV 361
            R+RDG VV + G K ++E + P+WDGGSRGK+KTKGKRG GFV
Sbjct:  276 RYRDGKVVTTTGAKVIVETVKPEWDGGSRGKVKTKGKRGKGFV 318
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: PRW33324.1 (DNA ligase 4 [Chlorella sorokiniana])

HSP 1 Score: 68.6 bits (166), Expect = 4.700e-8
Identity = 30/45 (66.67%), Postives = 38/45 (84.44%), Query Frame = 0 
Query:  316 KLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV 361
            K R+RDG +V+++GEKY+ EK  P+WDGGSRGK+ TKGKRG GFV
Sbjct:  266 KARYRDGALVSTRGEKYVFEK-GPEWDGGSRGKVYTKGKRGKGFV 309
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: PSC73823.1 (hypothetical protein C2E20_3197 [Micractinium conductrix])

HSP 1 Score: 64.7 bits (156), Expect = 6.700e-7
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0 
Query:  315 SKLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGFV 361
            SK+R+RDG+V    G+KY++ K   DWDGGSRGK+ TKGKRG GFV
Sbjct:  248 SKVRYRDGMVATRAGQKYVVGK-DEDWDGGSRGKVYTKGKRGKGFV 292
[Close]
BLAST of NO05G05070 vs. NCBI_GenBank
Match: GAX73881.1 (hypothetical protein CEUSTIGMA_g1331.t1 [Chlamydomonas eustigma])

HSP 1 Score: 64.3 bits (155), Expect = 8.800e-7
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = 0 
Query:  314 ESKLRFRDGVVV-ASKGEKYLIEKITPDWDGGSRGKIKTKGKRGPGF 360
            + K+R+ +GV V   KGEKY++E +  +WDGGSRGK+KTKGKRG GF
Sbjct:  240 DPKVRYHNGVPVHVRKGEKYVVEVVQEEWDGGSRGKVKTKGKRGKGF 286
The following BLAST results are available for this feature:
BLAST of NO05G05070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
PNW75098.14.200e-965.96hypothetical protein CHLRE_12g496550v5 [Chlamydomo... [more]
KXZ47386.11.200e-868.89hypothetical protein GPECTOR_35g824 [Gonium pector... [more]
XP_002947940.11.600e-864.44hypothetical protein VOLCADRAFT_88352 [Volvox cart... [more]
PNH10884.12.700e-863.04hypothetical protein TSOC_002378 [Tetrabaena socia... [more]
CBJ32294.14.700e-865.12hypothetical protein Esi_0327_0015 [Ectocarpus sil... [more]
PRW33324.14.700e-866.67DNA ligase 4 [Chlorella sorokiniana][more]
PSC73823.16.700e-763.04hypothetical protein C2E20_3197 [Micractinium cond... [more]
GAX73881.18.800e-759.57hypothetical protein CEUSTIGMA_g1331.t1 [Chlamydom... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR078ncniR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003340NSK003340Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G05070.1NO05G05070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611477gene_10601Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G05070.1NO05G05070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G05070 ID=NO05G05070|Name=NO05G05070|organism=Nannochloropsis oceanica|type=gene|length=2092bp
ACAGAAATACGTCAGTTTGATCAATATAAAAGCTATTCCTGCCCCGGCTA
GAGGCTACCGCCCCTCCGCCTTTACTTGTATCGATCTGAACGCACTTCGA
CTCGACACCACGGGAGGTTGCCCTTGCCCTAGCACTATTTATTACCATGG
CCTGCACCAGCGACGACAACGAGAATGCGATTACTTTGGCCCTGCGCGCG
GCGTTTTACGCCAGCTTGGGGAGCAACGAGGAGGAAATGGACGTGAATAT
CGTGgtacgtctctcttcaaactaccccttccctcccttccccttcccac
tatcctcgccaccctcccgacccccgcatgccattgctctcctctcgcca
cacttaccactcaaacagacccaaatgcttatcttcttagctaaatctcc
tctttatctctccttttacccaatagGACTACCTAATCAGTGTCCTCGTC
GACACGGACGTGGAAGAAGAAGACGCATGGGGGGTCCTACAAGGATACCT
TCCTGACAATAGGGAAGTAGGAGAAGAGGCTGTTGAGGCATTACGACAGA
CCCTCAAGGACACTTCGATTGCCAAGGAGATGGAGGAGGAAGCAGCGGCG
GTGCGGAGGAGGGAGGCGGCACGAGCGGCAGCTCTAGCGGCGGCGAGCAG
CAGTGACGATGGTGTGCGGACAGGAGTGGAGGAAGAGGAGGAATGGAAGA
AGGAAGAGGACGAGGAAGAGGAGGAGGTGTTGACGGAGGCCCAGCTGCTG
GACCTGGATTTCCTTCACGACTTATTGGGCGAAGGGGGGGTCGAGGAAGA
AGATGAGAGAAGCGGAAACATAGCTGCAGCAACGACGGGGAAAACCAGCT
CTTTGCCCTCTTCTTCTGTGCCATCCTCCTTATCTCCCTCTTCGAATTCC
GTGGTAGCCTTCCCGAGGGACGTGATAAAGTACGTGTACCAGGTGAAGTG
CGGCAACACCAGGCAACGCGCGGCGGAGGTCCTCGTCACGTCGGCATCGG
AGGAGGGCATTGCATCCCTGAGGAAGGAGCAGgtgagttgaagagggaaa
gaaggggggaagaggttggaaggaggaaagtttcccctgtgggagtggca
gatagatgaaaggtggagggagggagggagggagggagggagggagggag
ggagggagggaaggatggagggtcgtcgcgattccgggtagtattggacg
gcttgtgggagacttctccgccaccacaacaggcttcttcctgtctcttt
ctctcccagtcatccttaaacttccctccccctcccctccccccattcct
cgaatagGAACGTTACATCGAGTCCCGCGCCCTTGCCCGCGCCAATCGCC
TCCGTGACGCCTTGCGTCTAAAGCAACAAATCGTGGACCGATTCGCAGAT
CAAGTGACCTTCCACGACGGTAATCCCTCAACGACCTCTTACTCCTCCTC
CTTCTCCTCCTCCTCCTCCTCCTCCTCGTCTTCCTCCTCGTCGGCGAAGC
GCGTACCGATCTCTATCCCTGCCCCCCCGGCGGAGAGTAAGCTCCGGTTC
CGAGATGGGGTGGTAGTGGCATCTAAAGGAGAGAAGTATTTGATCGAGAA
AATCACGCCCGATTGGGACGGAGGGAGCCGGGGGAAGATCAAGACGAAGG
GAAAGAGGGGGCCAGGATTTGTGTAGTGGAGGAAGAGGAGTAGGAAATTT
AGTATGGAAGCGAGAGATGGTGGAAAGGGAAGATTTCTACTTGTTTGAAA
GCGATCGGCTTTGAAGCCGCCGTCCCTGTCCAGATGTGTCAAAGGGGGCA
AGCAATGCGAAAGAAGCACCGTGGCTTCCCTCTGGCGAATGGCTCGACGT
AGAATTTGCGTCCGTACGCCCATGTGCGCGTGAAGACAAAAGACAAAACA
GATCATGTTCCCCTTCCATAGATGATAGAGAATGGGTGACAAAATGTACA
ATAAATAGAGAATATGTACTGCAAATATCGACGCTTCCCACAAAATTTCT
ATGCTCATGACGTACGCCTGTCCTTGCAGCCCCACGACCCAAGGTGCAAG
AAACTCTTCAACGAAATAAAACAGAAACATAAAAGCATTGCG
back to top

protein sequence of NO05G05070.1

>NO05G05070.1-protein ID=NO05G05070.1-protein|Name=NO05G05070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MACTSDDNENAITLALRAAFYASLGSNEEEMDVNIVDYLISVLVDTDVEE
EDAWGVLQGYLPDNREVGEEAVEALRQTLKDTSIAKEMEEEAAAVRRREA
ARAAALAAASSSDDGVRTGVEEEEEWKKEEDEEEEEVLTEAQLLDLDFLH
DLLGEGGVEEEDERSGNIAAATTGKTSSLPSSSVPSSLSPSSNSVVAFPR
DVIKYVYQVKCGNTRQRAAEVLVTSASEEGIASLRKEQERYIESRALARA
NRLRDALRLKQQIVDRFADQVTFHDGNPSTTSYSSSFSSSSSSSSSSSSS
AKRVPISIPAPPAESKLRFRDGVVVASKGEKYLIEKITPDWDGGSRGKIK
TKGKRGPGFV*
back to top
Synonyms
Publications