NO05G04970, NO05G04970 (gene) Nannochloropsis oceanica

Overview
NameNO05G04970
Unique NameNO05G04970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3160
Alignment locationchr5:1292132..1295291 -

Link to JBrowse

Properties
Property NameValue
DescriptionNuclear acid binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1292132..1295291 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: EWM27900.1 (nuclear acid binding protein [Nannochloropsis gaditana])

HSP 1 Score: 432.2 bits (1110), Expect = 2.600e-117
Identity = 267/415 (64.34%), Postives = 288/415 (69.40%), Query Frame = 0 
Query:   41 GGTEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYATAGPGAGPPEYYPPGMHLHXXXXXXXXXXXXXXXXXXXXXXXGGYFAPGPMPY 456
            GGTEEPCKTLWVGDIQPSWDEAYVGS+FANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEF++ EIAEKVLETCNGNAI GT FRFRLNWGAGGKR+E+ PEFSIFVGDLAP+VTDQMLQ +F EK+PSTLGAKVVMDPVSGMSKGFGFVRF +EEEK++AL++M       R IRVAP                  X      HA P+        H H+ML G                                   FVGGID GVTEDVLREAFSG+GDI+YVKIP GRGCGFVQYV R SAE AIAKMQG DV+GCKVRLSWG            XXXXXXXXXXXXXX       YAT GPGAG   YYPP  HLH        XXXXXXXXXXXXX  G ++APGP+PY
Sbjct:    2 GGTEEPCKTLWVGDIQPSWDEAYVGSVFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFATAEIAEKVLETCNGNAIAGTHFRFRLNWGAGGKRMETAPEFSIFVGDLAPEVTDQMLQDIFLEKFPSTLGAKVVMDPVSGMSKGFGFVRFKNEEEKEEALSTMXXXXXXGRAIRVAP---XXXXXXXXXXXXXXXXXXXXXXHASPY-----PGMHPHMMLGGD-------------------------GEDPHNTTVFVGGIDAGVTEDVLREAFSGYGDIIYVKIPPGRGCGFVQYVNRTSAETAIAKMQGADVRGCKVRLSWG--RSSPARAEGRXXXXXXXXXXXXXXMAGYPAMYATVGPGAGGGGYYPPTSHLH----PPHPXXXXXXXXXXXXXQSGYHYAPGPIPY 377
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: POM68113.1 (Nucleolin [Phytophthora palmivora var. palmivora])

HSP 1 Score: 267.3 bits (682), Expect = 1.100e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0 
Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLFA+      +   VKLIRDK TG+PAGYGF+EF +   A++VLE  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +      T  G             +P  +                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AIA+M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLFASA----VEQPVVKLIRDKVTGYPAGYGFLEFPTQRGAQQVLEAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLTTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKTRQQTAFG-------------MPEEE-------------------------------------------GTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTTKEAAEVAIAQMNGTVISGVKVRCAWG 265
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: CBJ29399.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 266.2 bits (679), Expect = 2.500e-67
Identity = 148/332 (44.58%), Postives = 183/332 (55.12%), Query Frame = 0 
Query:   36 DSREDGGTEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            D +         KTLW+GD+QP W E YV SLF++     G  +EVKLIRD+H G  AGYGF++F + E A+ VL++ NG  IEGT  R+RLNWGAGGKR+E  PE+S+FVGDL+P+VTD  L+A F  KY S LGAKVV +P++G SK FGF+RFGDE+E+D+AL +M G  C  R IRVAPAT + +    TG                        H  D                                         FVGGI+  VTE VLR+ F+  G+I  V  P GRGC FV +  RASAE  I  MQG  V G  VRLSWG
Sbjct:    4 DQQYQDENRSAAKTLWLGDVQPDWTEEYVESLFSSI---VGQELEVKLIRDRHRGIVAGYGFIDFRNHETAQLVLDSLNGKPIEGTSLRYRLNWGAGGKRIEQAPEYSVFVGDLSPEVTDAELKATFLGKYTSVLGAKVVTNPMTGSSKSFGFIRFGDEQERDEALTAMNGAECCGRPIRVAPATKRTSVQGQTGA-----------------------HATD-----------------------------------PSNTTVFVGGINDSVTEKVLRDTFNSAGEIQTVTTPPGRGCAFVTFAHRASAEHVINNMQGTTVCGSCVRLSWG 274
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_008898353.1 (hypothetical protein PPTG_06213 [Phytophthora parasitica INRA-310] >ETI31551.1 hypothetical protein F443_21471 [Phytophthora parasitica P1569] >ETK71944.1 hypothetical protein L915_20875 [Phytophthora parasitica] >ETL25372.1 hypothetical protein L916_20759 [Phytophthora parasitica] >ETL78598.1 hypothetical protein L917_20608 [Phytophthora parasitica] >ETM31858.1 hypothetical protein L914_20628 [Phytophthora parasitica] >ETN15956.1 hypothetical protein PPTG_06213 [Phytophthora parasitica INRA-310] >ETO60272.1 hypothetical protein F444_21489 [Phytophthora parasitica P1976] >ETP01363.1 hypothetical protein F441_21358 [Phytophthora parasitica CJ01A1] >ETP29527.1 hypothetical protein F442_21307 [Phytophthora parasitica P10297])

HSP 1 Score: 265.8 bits (678), Expect = 3.200e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0 
Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLF  T   E  V  VKLIRDK TG+PAGYGF+EF +   A++VL+  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  +    G G+G                                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AI++M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLF--TSAAEQPV--VKLIRDKVTGYPAGYGFLEFPTPRGAQQVLDAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLNTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKSRQQVGFGMG--------------------------------------------------------EEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTSKEAAEVAISQMNGTVISGVKVRCAWG 265
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_008898352.1 (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETI31552.1 hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK71945.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL25373.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL78599.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM31859.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETN15957.1 hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >ETO60273.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP01364.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP29528.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 265.8 bits (678), Expect = 3.200e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0 
Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLF  T   E  V  VKLIRDK TG+PAGYGF+EF +   A++VL+  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  +    G G+G                                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AI++M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLF--TSAAEQPV--VKLIRDKVTGYPAGYGFLEFPTPRGAQQVLDAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLNTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKSRQQVGFGMG--------------------------------------------------------EEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTSKEAAEVAISQMNGTVISGVKVRCAWG 265
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: KUF83643.1 (Polyadenylate-binding protein RBP45A [Phytophthora nicotianae])

HSP 1 Score: 265.8 bits (678), Expect = 3.200e-67
Identity = 146/324 (45.06%), Postives = 182/324 (56.17%), Query Frame = 0 
Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLF  T   E  V  VKLIRDK TG+PAGYGF+EF +   A++VL+  NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDVTD++L   F  ++ +  GAKVVMDPV+ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  +    G G+G                                                                 FVGG+D   TED LR  F   G+IV VK+P GRGCGFVQY  + +AE AI++M G  + G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIASLF--TSAAEQPV--VKLIRDKVTGYPAGYGFLEFPTPRGAQQVLDAYNGQLIPNTMHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVTDELLLNTFSARFTTVRGAKVVMDPVTRMSKGFGFVRFGSKEEADQALQTMNGVYCSSRPMRVSVATERNKSRQQVGFGMG--------------------------------------------------------EEEGTNTTVFVGGLDPSTTEDELRARFGALGEIVSVKVPPGRGCGFVQYTSKEAAEVAISQMNGTVISGVKVRCAWG 265
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_024572203.1 (nuclear acid binding [Plasmopara halstedii] >CEG35834.1 nuclear acid binding [Plasmopara halstedii])

HSP 1 Score: 265.0 bits (676), Expect = 5.500e-67
Identity = 144/324 (44.44%), Postives = 183/324 (56.48%), Query Frame = 0 
Query:   44 EEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            E  CKTLW+GDIQ  WDE ++ SLFA+      +   VKLIRDK TG+PAGYGF+EF +   A++VLET NG  I  T  RFR+NWGAGG+R+E+  + SIFVGDLAPDV D++L + F  ++ +  GAKVVMDP++ MSKGFGFVRFG +EE DQAL +M GV C SR +RV+ AT +  A    G  +                                                                  FVGG+D G +E+ LR  F   G+IV VK+P GRGCGFVQY  + +AEAAI++M G  V G KVR +WG
Sbjct:    2 ETECKTLWMGDIQMHWDETFIVSLFASA----AEQPIVKLIRDKVTGYPAGYGFLEFPTQRGAQQVLETFNGQLIPNTLHRFRMNWGAGGRRIETSDDHSIFVGDLAPDVADELLLSTFSARFTTVRGAKVVMDPITRMSKGFGFVRFGSKEEADQALQTMNGVFCSSRPMRVSVATERNKARQQLGFSMS--------------------------------------------------------EEDGANTTVFVGGLDPGTSEEELRTRFGALGEIVSVKVPPGRGCGFVQYTTKEAAEAAISQMNGSVVGGVKVRCAWG 265
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_012208574.1 (hypothetical protein SPRG_13902 [Saprolegnia parasitica CBS 223.65] >KDO20690.1 hypothetical protein SPRG_13902 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 262.3 bits (669), Expect = 3.500e-66
Identity = 164/325 (50.46%), Postives = 193/325 (59.38%), Query Frame = 0 
Query:   43 TEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            TE  CKTLW+GD+Q +WDEAYV SLF       G +  VKLIRDK TG+PAGYGF+EF S + A  VL T NG  I  TP RFRLNWGAGGKRLES+ ++S+FVGDLA DVTD +L A F  KY S  GAKVV+D +S +SKGFGFVRFG + E DQAL  M G  C  R +RV+ AT +                               HHP                          XXXXXXXXXXXXXXX  FVGG+D  +TED LR+ FS  G ++ +KIP GRGCGFVQY  RA AE AI +M G  +   K+R +WG
Sbjct:    2 TEPDCKTLWMGDVQINWDEAYVSSLFD----AFGHLPTVKLIRDKVTGYPAGYGFLEFDSPDSASDVLSTLNGQPIPNTPHRFRLNWGAGGKRLESMEDYSVFVGDLAGDVTDDVLFATFSAKYASVRGAKVVLDQMSRISKGFGFVRFGVKAEADQALQQMHGEPCLKRPMRVSAATDRPK-----------------------------HHP----------------------PTTPXXXXXXXXXXXXXXXTVFVGGLDASITEDDLRKQFSSIGPVLSIKIPLGRGCGFVQYSTRALAEQAIQEMSGVQLGASKLRCAWG 271
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: XP_012211329.1 (hypothetical protein SPRG_16633 [Saprolegnia parasitica CBS 223.65] >KDO17960.1 hypothetical protein SPRG_16633 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 261.9 bits (668), Expect = 4.600e-66
Identity = 164/325 (50.46%), Postives = 193/325 (59.38%), Query Frame = 0 
Query:   43 TEEPCKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            TE  CKTLW+GD+Q +WDEAYV SLF       G +  VKLIRDK TG+PAGYGF+EF S E A +VL T NG  I  TP RFRLNWGAGGKRLES+ + S+FVGDLA DVTD +L + F  KY S  GAKVV+D +S +SKGFGFVRFG + E DQAL  M G  C  R +RV+ AT +                               HHP                          XXXXXXXXXXXXXXX  FVGG+D  +TED LR+ FS  G ++ +KIP GRGCGFVQY  RA AE AI +M G  +   K+R +WG
Sbjct:    2 TEPDCKTLWMGDVQINWDEAYVSSLFD----AFGHLPTVKLIRDKVTGYPAGYGFLEFDSPEAASEVLSTLNGQPIPNTPHRFRLNWGAGGKRLESMEDHSVFVGDLAGDVTDDVLFSTFSAKYASVRGAKVVLDQMSRISKGFGFVRFGVKAEADQALQQMHGELCLKRPMRVSAATDRPK-----------------------------HHP----------------------PTTPXXXXXXXXXXXXXXXTVFVGGLDASITEDDLRKQFSSIGSVLSIKIPLGRGCGFVQYSTRALAEQAIQEMSGVQLGASKLRCAWG 271
[Close]
BLAST of NO05G04970 vs. NCBI_GenBank
Match: CCA18326.1 (conserved hypothetical protein [Albugo laibachii Nc14] >CCA18401.1 conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 261.2 bits (666), Expect = 7.900e-66
Identity = 145/328 (44.21%), Postives = 187/328 (57.01%), Query Frame = 0 
Query:   47 CKTLWVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEFSSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLAPDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQALASMTGVSCGSRTIRVAPATAK-KAAG------SVTGIGVGGGXMMVGGMHALPHHQHMLHHPHDHVMLSGSPMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIAKMQGGDVQGCKVRLSWG 368
            CKTLW+GDIQ +WDEAY+GSLFA+      +   +KLIRDK TG+PAGYGF+EF S + A+ VL T NG  +  T  RFRLNWGAGG+R+++V + SIFVGDLAP+V+D++L + F  ++ S  GAKVV+DPV+ M KGFGFVRFGD+ E DQAL +M GV C SR +RV+ AT + K  G      S T +G G                                                                 F+GG+D   TED LR  F   G+I+ VK+P GRGCGFVQYV + +A+ AI +M G  + G KVR +WG
Sbjct:    5 CKTLWMGDIQLNWDEAYIGSLFASA----VEQPSIKLIRDKVTGYPAGYGFLEFPSQQGAQAVLNTFNGQIVPNTIHRFRLNWGAGGRRIDTVEDHSIFVGDLAPEVSDELLLSTFSTRFSSVRGAKVVIDPVTRMPKGFGFVRFGDKGEADQALQTMNGVYCSSRPMRVSVATDRTKTRGIMPPPISYTVVGTGN------------------------------------------------------TEEEGANTTVFIGGLDPSTTEDDLRARFGVIGEIMSVKVPPGRGCGFVQYVTKDAADVAINQMNGALINGVKVRCAWG 274
The following BLAST results are available for this feature:
BLAST of NO05G04970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27900.12.600e-11764.34nuclear acid binding protein [Nannochloropsis gadi... [more]
POM68113.11.100e-6745.06Nucleolin [Phytophthora palmivora var. palmivora][more]
CBJ29399.12.500e-6744.58conserved unknown protein [Ectocarpus siliculosus][more]
XP_008898353.13.200e-6745.06hypothetical protein PPTG_06213 [Phytophthora para... [more]
XP_008898352.13.200e-6745.06hypothetical protein, variant 1 [Phytophthora para... [more]
KUF83643.13.200e-6745.06Polyadenylate-binding protein RBP45A [Phytophthora... [more]
XP_024572203.15.500e-6744.44nuclear acid binding [Plasmopara halstedii] >CEG35... [more]
XP_012208574.13.500e-6650.46hypothetical protein SPRG_13902 [Saprolegnia paras... [more]
XP_012211329.14.600e-6650.46hypothetical protein SPRG_16633 [Saprolegnia paras... [more]
CCA18326.17.900e-6644.21conserved hypothetical protein [Albugo laibachii N... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003351NSK003351Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04970.1NO05G04970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664756gene_3315Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100197g10gene2662Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04970.1NO05G04970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04970 ID=NO05G04970|Name=NO05G04970|organism=Nannochloropsis oceanica|type=gene|length=3160bp
ATGCCGGGCAGAAGTTGCTTGACTTTGGATCTTCATATGCAGCGAGCCTC
TCCCTCTTCCTGCTTCTCCCCTTTGTTGCAGCGGACGCCCGAAAAGGAAG
CTTTGGACTCGCgtgctacgatttaacttgtcccttctcatgcacgcaca
caggtggcatttttttcgtgggccgcctcgacggttccccatgcaggtca
cttatgcgttgcaaacaacactttgcgttgccttcccgcgatagcgccgc
cgttcttaattcatttcccttccccttctcataaccatagGCGAAGATGG
GGGGACAGAGGAACCATGCAAAACCCTTTGGGTGGGAGACATCCAGgtac
gtctggagaggatacacaggataaggagcacgcggggttggatgctgctg
gttttgcccttggtaaattgcatgccccattacaagcggatcgaataggc
ctcggggcggccatcgcgtcgtcgcctcatcatatcacttgcggtgcagt
tgccatcctgatcttgcggccacatagaacgttgatgcacacacattctc
atgcacactccttacacacaatgtacacacagCCTTCATGGGACGAAGCA
TATGTGGGCAGCCTCTTCGCAAATACAGgtcagtatttacgagattattt
aggctccgttcagcaatagggtcggtttgaaaggacgggaaaaatcgaga
aagagagtgacggattaaaggaagagaagaagtcagattggagaagatct
tggaagccgagagaagtggaaccgcaggaggtgtgggtaatgttggaatg
ttcagatcttgattttaattccgtaaggccactagcagatgcattaggta
caacgaagacaatttctaattgagagattaaacaattgaatccagtcctc
accctcactctcctccgtctttttacaccctccctcttttcctccctccc
tccgttcgtccttcagGATTGGAAGAAGGAGACGTCGTGGAAGTCAAGTT
GATCCGCGACAAGCATACGGGTTTCCCGGCCGGATATGGCTTTGTGGAGT
TTTCTTCGCTTGAGATAGCCGAGAAGGTCCTCGAGACGTGCAATGGCAAT
GCAATAGgtaggagggaggcagggaggggggaagggaagaggaagggggg
gggaaaatactgctttggagagacttttgaagaggaaatgtaagaaaaca
caattgtacacatgtttgtaaaaggagagacttgtgaagaggaaatataa
aaaaacatgatcgtacatatgtttgtataagaataagattagaatctatg
cgcacctacttcctccctccctctctcactctctcactcaccctccctcc
ctccctccctcccctcctaatttccttccctccctcgcagAAGGGACGCC
TTTCCGTTTCCGGCTTAACTGGGGCGCGGGCGGAAAGCGCTTGGAATCCG
TGCCGGAGTTTTCCATTTTCGTCGGTGATTTAGCCCCGGACGTAACAGAT
CAGATGCTTCAAGCCGTTTTCGGGGAAAAATACCCCTCGACCTTGGGCGC
AAAGgtagggagggagggagggagggaaagaaagaagtagggagggaaag
aaagaagtagggagggaaagacagaagtagggaggggcagaaagaagtag
ggaggggcagaaagaagtagggagggaaagaactaagtagggagggaaag
aaagaagcagggaggggcaggtgtttaaaaattcttcgagatcgtttcct
catgaaggaataattaaatccatcgatcaactcaccatttccccccttct
tccctcccttcctccctccctcccttccagGTGGTGATGGACCCAGTGAG
CGGAATGAGCAAAGGCTTCGGCTTTGTGCGCTTCGGTGATGAAGAGGAGA
AGGATCAGGCCTTGGCCTCGATGACCGGCGTTTCGTGCGGCAGTCGTACC
ATCCGTGTCGCGCCAGCCACGGCCAAGAAAGCGGCGGGTAGTGTAACGGG
GATAGGAGTGGGAGGGGGAGGGATGATGGTGGGAGGAATGCATGCCCTCC
CACACCATCAGCATATGCTGCACCATCCACACGACCATGTGATGCTGAGT
GGGAGCCCGATGGCGGGGCCGGCGTCAAGCGCAGGAGGAGGAGCAGCAGC
CGGGGGAGGGGGTGGGGCAGCCGGAGGAGAGGGGGAGGACCCCAATAATA
CGACTGTCTTCGTGGGAGGTATCGATGGGGGGGTGACGGAGGACGTGTTA
AGAGAAGCCTTTTCCGGGTTTGGTGACATAGTGTACGTGAAAATCCCGCA
GGGACGGGGATGTGGATTCGTTCAGTACGTGCTTCGAGCCAGCGCCGAGG
CGGCGATCGCCAAAATGCAGGGCGGGGACGTGCAAGGTTGCAAAGTCCGT
TTGTCATGGGGCAGGTCGAGTCCAACACGGTCAGGGGGGAGGATGGGGGG
GATGGGAGTAGGGGAGGGAGGGATGGGGGTAGGGGGGCCAGCAGTTGGAT
ATCCGGGTATGTATGCGACCGCGGGACCGGGGGCGGGGCCACCAGAATAC
TACCCTCCAGGCATGCATTTGCACCACCACCATCAGCACCCGCAACATGC
ACCACACCCGCCGCACCCACACCACCACCACCAGCAGCAGCAGGGCGGCT
ATTTTGCGCCTGGCCCGATGCCCTATTCGCAGCCTGTATCCCCCTACCTC
CCCCCCTACCACCAGCACCAGCAGCAGCACCAGCAAGCGCCCCCTCACTA
CCACCAAGCTCAAGGAGGGGGAGGGGGAGGGGGCGGGGGCGGAAACCCTT
ATTCACACATGACCTATCCCTACCATCCCCACCATCTGCACCCTCATTCC
CTGCCTCCCCCGATACCAGGCCAAGAGAGAGGGGGCTACGGCGGGCCTTA
TTCATCTGGAGGGGAGAGCCCGGGAGGGAGGGAGGGAGGGAGGGAGATGG
GCAGTAGCACGGCATATTATTACGAGGGAGGGAGGGGAGGGGATCCCAAC
CTGCCGCACCGACCACCAGGAGGGGGTAGGAAGGGGGAGGGGTGGGAGGA
GGGATGAAGGGGCTGACAGCGCAGATGGAGGGCTTGGACATGGGAGGAGG
GGGGGGATGCAGGGAGATGGATATATAAAAGGAGGGATGCCACCAGGGAG
GGGAGGGCCG
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protein sequence of NO05G04970.1

>NO05G04970.1-protein ID=NO05G04970.1-protein|Name=NO05G04970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MPGRSCLTLDLHMQRASPSSCFSPLLQRTPEKEALDSREDGGTEEPCKTL
WVGDIQPSWDEAYVGSLFANTGLEEGDVVEVKLIRDKHTGFPAGYGFVEF
SSLEIAEKVLETCNGNAIEGTPFRFRLNWGAGGKRLESVPEFSIFVGDLA
PDVTDQMLQAVFGEKYPSTLGAKVVMDPVSGMSKGFGFVRFGDEEEKDQA
LASMTGVSCGSRTIRVAPATAKKAAGSVTGIGVGGGGMMVGGMHALPHHQ
HMLHHPHDHVMLSGSPMAGPASSAGGGAAAGGGGGAAGGEGEDPNNTTVF
VGGIDGGVTEDVLREAFSGFGDIVYVKIPQGRGCGFVQYVLRASAEAAIA
KMQGGDVQGCKVRLSWGRSSPTRSGGRMGGMGVGEGGMGVGGPAVGYPGM
YATAGPGAGPPEYYPPGMHLHHHHQHPQHAPHPPHPHHHHQQQQGGYFAP
GPMPYSQPVSPYLPPYHQHQQQHQQAPPHYHQAQGGGGGGGGGGNPYSHM
TYPYHPHHLHPHSLPPPIPGQERGGYGGPYSSGGESPGGREGGREMGSST
AYYYEGGRGGDPNLPHRPPGGGRKGEGWEEG*
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Synonyms
Publications