NO05G04940, NO05G04940 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04940 vs. NCBI_GenBank
Match: EWM27907.1 (Leucine-rich repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 390.6 bits (1002), Expect = 9.600e-105 Identity = 278/734 (37.87%), Postives = 377/734 (51.36%), Query Frame = 0 Query: 9 LALLPRGTDRLVASFLGAPQGLYCLACSHRHLGRFISFVERLDNLTPERLESLLNYFQC---------------GVVSLPYGDVESDADVEYDDEYDKRAAVDE-------KAPGTQKTNDETED-----------------------------------------------RLPLLRHL----------------------HFDTGQERSARLETIDFARRYG----GAHVV---TRPGDLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRD---EFTREVGQSFQTGAISALEELSLTNCV-PELNAESAMDMANGIAQAPADVTRRLEILRLRGYALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGWRGAGG--IRLKRLRLGGQYIGDDGVAELMAGW--KGELGCWDALEELKLNENRLTDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLTAEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRRKRDMAILAEELKQARGPRVVWDILTIN 637 L LP+GTD L SFL Q LYCLACSHR L +++ +V+RL+NL RL++L +F+ G ++ + + + + + + PGT N T + +P +R + H G + A LE +DFA R G G + V T + L +R L LR+LRLD P D +RD + G F GA++ LEEL L N + A + M +A+ P + +++LRL G+ G F A+ALVTAFTGM +P DGRW LR+LDL++NLLGDI LE LAES+ GVF PAL+E+DLSL++ +RR+QQ+TIGPAGI+ALV AL+ RG G I LKRL LGGQ IGD+GVAEL GW +G CW ALEE+KLNEN +TDE ++ V + M S +++ ++ K PVL RLVLERN I GG L +++ + A +KRLNLARNPLTAEG+ + CLG SL+ELKLGGN+N N+AM R+LW C + +L+R L D+RRLD+R+L +SR VVEE L G+ RLCQ+EL++AD+RR+RD+A++ +LK ARGPR+VWD+LTIN Sbjct: 40 LTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPP--------LDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHPALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKA------RGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRG-FCCWKALEEVKLNENGITDEGFWHLMAGVTPCVE-----------EEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEW-KNLAR---------LWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTIN 737
BLAST of NO05G04940 vs. NCBI_GenBank
Match: XP_005854727.1 (hypothetical protein NGA_0363900 [Nannochloropsis gaditana CCMP526] >EKU21630.1 hypothetical protein NGA_0363900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 390.2 bits (1001), Expect = 1.200e-104 Identity = 278/734 (37.87%), Postives = 377/734 (51.36%), Query Frame = 0 Query: 9 LALLPRGTDRLVASFLGAPQGLYCLACSHRHLGRFISFVERLDNLTPERLESLLNYFQC---------------GVVSLPYGDVESDADVEYDDEYDKRAAVDE-------KAPGTQKTNDETED-----------------------------------------------RLPLLRHL----------------------HFDTGQERSARLETIDFARRYG----GAHVV---TRPGDLALFPSRRLLHSLRILRLDGPLQAQAKRWFSDAVAAFRD---EFTREVGQSFQTGAISALEELSLTNCV-PELNAESAMDMANGIAQAPADVTRRLEILRLRGYALGGFESAVALVTAFTGMGSPPDGRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRRSQQSTIGPAGIQALVRALQTRRWDGWRGAGG--IRLKRLRLGGQYIGDDGVAELMAGW--KGELGCWDALEELKLNENRLTDESVRRIITVGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARNPLTAEGMTVLVQCLGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRRKRDMAILAEELKQARGPRVVWDILTIN 637 L LP+GTD L SFL Q LYCLACSHR L +++ +V+RL+NL RL++L +F+ G ++ + + + + + + PGT N T + +P +R + H G + A LE +DFA R G G + V T + L +R L LR+LRLD P D +RD + G F GA++ LEEL L N + A + M +A+ P + +++LRL G+ G F A+ALVTAFTGM +P DGRW LR+LDL++NLLGDI LE LAES+ GVF PAL+E+DLSL++ +RR+QQ+TIGPAGI+ALV AL+ RG G I LKRL LGGQ IGD+GVAEL GW +G CW ALEE+KLNEN +TDE ++ V + M S +++ ++ K PVL RLVLERN I GG L +++ + A +KRLNLARNPLTAEG+ + CLG SL+ELKLGGN+N N+AM R+LW C + +L+R L D+RRLD+R+L +SR VVEE L G+ RLCQ+EL++AD+RR+RD+A++ +LK ARGPR+VWD+LTIN Sbjct: 40 LTCLPQGTDILFVSFLSGSQALYCLACSHRKLAKYVCYVDRLNNLQKGRLKALARHFKSYSLNGARYHDQHICNGPAKYTARELPLLKKLHFSGQMEWNSGLLRLFLNSILLTPGTACVNMPTLECLDLSETVMTSVVLHLLLEKIAKRPHLHTLLLPDMRETAYGTANFVRSIPFIREVGNRHGVGLHYLREIIDKLRLGEHHHEGLLQPAPLEKLDFACRRGEVKLGQYRVACRTLLDMVKLLGARALFPRLRVLRLDCPP--------LDFKGLYRDVSITLCKNAGPYFMRGAVAGLEELCLRNTENMGMTASDLIGMTKAMARGPVANFKAMQVLRLHGFVSGEFHLALALVTAFTGMRNPRDGRWHSLRILDLTNNLLGDIALETLAESIGKGVFGPALQELDLSLSQGVRRTQQTTIGPAGIRALVMALKA------RGDAGEEICLKRLHLGGQEIGDEGVAELARGWCLRG-FCCWKALEEVKLNENGITDEGFWHLMAGVTPCVE-----------EEMEESEEEAPPTSLRRGKWPVLRRLVLERNLIMGGEDLCKRVRSFFACQMLDACPTALPLKRLNLARNPLTAEGLGTFLSCLGPSLRELKLGGNTNKSNYNNAMLRELWRPVCDAFEW-KNLAR---------LWDVRRLDLRKLEMSREVVEELARVLQEGRQLTRLCQLELSLADIRRERDVAVIVNDLKIARGPRLVWDVLTIN 737
BLAST of NO05G04940 vs. NCBI_GenBank
Match: EWM23095.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana]) HSP 1 Score: 70.1 bits (170), Expect = 2.900e-8 Identity = 105/372 (28.23%), Postives = 148/372 (39.78%), Query Frame = 0 Query: 275 GRWAGLRVLDLSDNLLGDIGLERLAESMAAGVFSPALEEIDLSLNRHIRR-----------SQQSTIGPAGIQALVRALQTRRWDGWRG-----------AGGIRLKRLRLGGQYIGDDGVAELMAGWKGELGCWDALEELKLNENRLTDESVRRIIT-VGMIAVPSLPLDNNMDDGDRMGASTKQSKKRKIQPQKQPVLLRLVLERNEIRGGHVLRTQLQHILSFHRQPAPSWDSSIKRLNLARN----PLTA------EGMTVLVQC----LGSSLQELKLGGNSNGIGDNDAMARKLWAFSCVSPSLSSSLSRSSVSAPCSPLADLRRLDIRRLPISRTVVEEFMIRLHGGKIFPRLCQIELAVADVRR 610 GR+ L+VLDL DN LG G+ L + P LE +DLS+ R Q+ +GPAG L AL + G RG GG RL+RL LGG +G +GV L+ + G AL EL L +N L DE + + D G K+ ++ +Q P L +L+L N I G L FH P P SS+ LNL N PL A EG L C LG SL+ L L N F +P+ +++L R P + L++ + RT EE + + G K+ Q+ + +A+++R Sbjct: 451 GRFEKLKVLDLRDNALGCKGVSALCVGLHREGSMPCLESLDLSMGGRKRELGAGQGDGGEGRQRGGMGPAGCTVLCAALLRQ---GGRGKVXXXXXXXXXVGGCRLRRLGLGGHLMGVEGVEVLLKVLRA--GACPALRELDLTDNALGDEGACLVAEWLRGWERGREEWGGGAQDRPWEGKEGKE-EQEDVQVTTPPPLRQLLLGHNGIAGALFAVHPL-----FHTPPCPG-TSSLAALNLEGNLLASPLPAHAQGEDEGHHDLRPCLQAFLGPSLRHLSLAHN---------------PFIGSTPASAAALGRLVREYP-----GIEHLNLTGCGLGRTREEESVGVMTGKKVAKVGFQLPVMLAEIQR 790 The following BLAST results are available for this feature:
BLAST of NO05G04940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04940 ID=NO05G04940|Name=NO05G04940|organism=Nannochloropsis oceanica|type=gene|length=2496bpback to top protein sequence of NO05G04940.1 >NO05G04940.1-protein ID=NO05G04940.1-protein|Name=NO05G04940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=644bpback to top Synonyms
Publications
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