NO05G04860, NO05G04860 (gene) Nannochloropsis oceanica

Overview
NameNO05G04860
Unique NameNO05G04860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1232
Alignment locationchr5:1261520..1262751 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1261520..1262751 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04860 vs. NCBI_GenBank
Match: EWM27912.1 (hypothetical protein Naga_100267g5 [Nannochloropsis gaditana])

HSP 1 Score: 99.0 bits (245), Expect = 2.900e-17
Identity = 94/224 (41.96%), Postives = 116/224 (51.79%), Query Frame = 0 
Query:   92 GIPSSEILEHATALDEVIVKEXXXXXXXEIAVEIDMHASAARQQLQPISRSWLQGHDDVYTAAGDNCRRTRSFSSSFLLPPSLPTTTLLTEMRATLRGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSILHLPPTRQQHQQPNPK-QGQRLRAIPAS----QKFVLCMSCSNEEWLQVPQTAKYVRCPICTSITIALTSNTRFPVREERRTGGGPCTRL 311
            GIPSSE+    T    V+     XXXXX   V  D HAS A +Q  P S S  QG   +     DN       +S  L+   L   T L+ + ATLRGT                       XXXXXXXXX +  ++P +     +P  + + +RL A+PA+     K+V CMSC  EEWL+VP  AKYVRCP C SITIAL SN+RFP R+ RR  G PCTRL
Sbjct:    6 GIPSSEMNARVTGAGNVVAGSADXXXXXXXIV--DQHASVAPRQQHPASISH-QGDPPL-----DNPLHATHAAS--LVSEDLSGPTSLSSILATLRGT----------------RPPVAAVXXXXXXXXXQAPQNIPASANTFPRPRMEPERRRLHALPATTAKGYKYVQCMSCVEEEWLRVPVAAKYVRCPTCGSITIALASNSRFPARQGRREEGNPCTRL 203
The following BLAST results are available for this feature:
BLAST of NO05G04860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27912.12.900e-1741.96hypothetical protein Naga_100267g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003363NSK003363Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04860.1NO05G04860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585260gene_3303Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100267g5gene2650Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04860.1NO05G04860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04860 ID=NO05G04860|Name=NO05G04860|organism=Nannochloropsis oceanica|type=gene|length=1232bp
ACGACAGATATGAGCAGACATACCGCGGCGTCGCGGGCCTTGCAGCACTA
TACGTCAATGGCCCAGACAGAGGACAAAGAGAACGCGGGGCAGGTCGCTT
GGCTCgtaagtatatgtgcaacctgagctcgcacgactctagctatctat
tccacatcatttaggattatagaacgtatacccttggcacaaacatctgt
tacgtatgtttctcataaattacagatttatggatacgattttagacaga
gcttttccctaccttccaagaaagaggccccctattcacgttctctctct
ttatccaacccacccaaccaaccgacatcttgcttttactacagCGCGAG
GAAAATGACTACTACGACGATGAGGATGAGCAGCCTAGGTCCCTGTTTTG
TGGGGGCGGCATGGGTGCCTTGTGTGCGGCGATCCATCATTTGCATCCCC
ACGAGGCAGCGACCCCTGCTGCAGCAAAGAAGAAAGAGTACATGCAGCAA
CAACATGTCAGTAACGAAGAAGGAATACCATCCAGCGAAATACTAGAGCA
TGCGACGGCCTTGGACGAGGTGATCGTCAAAGAGCAAGAAGAGGAGGGTG
AGGAGGAGATAGCTGTGGAGATTGATATGCACGCGTCCGCGGCACGACAG
CAACTGCAACCTATCTCTCGATCATGGTTGCAGGGACACGACGACGTCTA
CACCGCAGCTGGAGACAATTGTCGAAGGACCCGTTCCTTTTCTTCTTCCT
TTCTCCTTCCTCCTTCCCTTCCTACCACTACCCTACTAACCGAAATGCGG
GCAACGTTGCGCGGCACACGTCCTGCTCCTCCTCCTCCTCCTTCTCCTCC
TTCTCCTCCTTCTCCTGCTGCTCGTGCTGCTTCTTCTACCGCTGGAACTG
CTCTTGGCAAAATCAATTCTATTTTGCATCTTCCTCCTACCCGCCAACAG
CATCAACAGCCAAACCCAAAGCAAGGACAACGTCTTCGCGCCATTCCCGC
CTCTCAAAAATTCGTGCTATGTATGTCATGTAGCAACGAAGAGTGGCTTC
AAGTGCCACAGACAGCCAAGTACGTGCGTTGTCCCATCTGCACCAGCATA
ACCATTGCTCTTACTTCCAATACTCGATTCCCGGTGAGAGAGGAAAGGAG
GACGGGGGGGGGTCCCTGCACACGGTTGATGACTTTTTTTTCGATGCTTC
AAGGGGGGGGAGGGGGGCCGGCGTCATTATAA
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protein sequence of NO05G04860.1

>NO05G04860.1-protein ID=NO05G04860.1-protein|Name=NO05G04860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MSRHTAASRALQHYTSMAQTEDKENAGQVAWLREENDYYDDEDEQPRSLF
CGGGMGALCAAIHHLHPHEAATPAAAKKKEYMQQQHVSNEEGIPSSEILE
HATALDEVIVKEQEEEGEEEIAVEIDMHASAARQQLQPISRSWLQGHDDV
YTAAGDNCRRTRSFSSSFLLPPSLPTTTLLTEMRATLRGTRPAPPPPPSP
PSPPSPAARAASSTAGTALGKINSILHLPPTRQQHQQPNPKQGQRLRAIP
ASQKFVLCMSCSNEEWLQVPQTAKYVRCPICTSITIALTSNTRFPVREER
RTGGGPCTRLMTFFSMLQGGGGGPASL*
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Synonyms
Publications