NO05G04770, NO05G04770 (gene) Nannochloropsis oceanica

Overview
NameNO05G04770
Unique NameNO05G04770
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3035
Alignment locationchr5:1239696..1242730 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1239696..1242730 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04770 vs. NCBI_GenBank
Match: EWM27924.1 (hypothetical protein Naga_100285g6 [Nannochloropsis gaditana])

HSP 1 Score: 161.4 bits (407), Expect = 7.800e-36
Identity = 145/404 (35.89%), Postives = 191/404 (47.28%), Query Frame = 0 
Query:    1 MAPAGGEKKSNEGFVLLEETEAIEAKIRQQQQQQGRVEGEAPVVEYELASFRRTISSAGEDDTVYS---DED------DVGLDDLSLEDMPTDLQVLCRHLRAESLALAAEESKQATDGKGEVKGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGIHGFLLFAWPIGTRELLFWALLVVFMTTLITLSEGQHTRAVNTTVT-RGARGXXXXXXXXXXXXXXQGATPLFVFDNVATAVAAAASFQQHYPSF-LPTYEGGRQAHSSLSPY-TEIALLKGQLRAQASLTRDREEELKWMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEKELCLARRG--GKEEEIEGKEEKEEPMTLNVVPEVRTVKVEGSAEE------GEWMWWWGSD 385
            MAPAG E    E FVLL+++EA+ A+++     +G   G A VVEYELASFRRT+SS   DD  Y+   DED      +   DDLSLEDMP DL+ LCR LRA+S AL AEE ++     G V G+G                                           F+WP+GTR++L  ALLVVFMTTLI+LS G+HTRAV      RG+ G              + A PL+VFD+VA+AVA AA+F  H  S+  P+        +S  P   +I+LL+G++RA  S+  D E+E+ W                                     E EL +AR               ++E + L VVPEV T+K  G  EE       E  +WWGS+
Sbjct:    1 MAPAGSEGCKEEDFVLLDKSEAVSAQLQDDSLARG---GSARVVEYELASFRRTLSSI-TDDASYARRGDEDFETEGNEEDTDDLSLEDMPEDLRGLCRRLRAQSRALDAEERRET----GTVLGEGGSGLKDNEGVGDWGQGESRRHRQQVRRRHPQAEACL-FEALWRFSWPLGTRDILIAALLVVFMTTLISLSGGRHTRAVPLAANRRGSEG-------------ERSAPPLYVFDDVASAVATAAAFPGHCASWAFPSARSHAHEKASSPPLPVKISLLEGRVRALVSMVGDLEKEVAWRKALQEGLEREVEGWEKKARNL---------------EAELRVARESMXXXXXXXXXXAGRDERVRLTVVPEVHTIKEGGDEEERTETRAPERAYWWGSE 367
The following BLAST results are available for this feature:
BLAST of NO05G04770 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27924.17.800e-3635.89hypothetical protein Naga_100285g6 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003372NSK003372Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04770.1NO05G04770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100285g6gene2641Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04770.1NO05G04770.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04770 ID=NO05G04770|Name=NO05G04770|organism=Nannochloropsis oceanica|type=gene|length=3035bp
AAAAGCGCCAAGCTTGCCTTGGATATGCCATGGCCCATGGCTTTTATGTT
GTGAGTTGTTCCTCGCTCGTTGGGCCATGTCACATGCGGCTTGCTTCAAG
TGCAAGTGGAAATTGCCTCCTTGCGTCTTTTGTGCATGGCGGTCCGACGA
AGCACCCACGGTTCATGCATCCTTTCTGGACAGCGTGCCATCTCTTTTGT
TCTTGTCTTGATGATCTTGAGGCTCCACGGACAGCCAAGACGCTGATATT
AACAGAAGTACGCACCCTCGATCGCCTGTGCTGGAAAATCTTGATTCGTG
ATATGCGCTTTCCCGTGCGACAAAAAGCGTGAACCTATCCAAAGCATGCA
CTCAGACCTCCACTCTCTATATAAATCCATAAAGTATTCACTTTTCACAG
GCAGCGTTCTAGGAGGACGAGGGAAAAGAACTGCATAAGAAAAGCTTGGA
GACAATCGAAGGCACCTCCCCCAAGCACTCACTATCTTGCTAGCTATTGC
TTGCCTGCCTCAACACCGCCACAATCAGGACCACTCTCTCTACCATGGCA
CCTGCTGGGGGCGAAAAGAAGAGTAATGAAGGATTTGTCCTGCTGGAAGA
GACGGAGGCTATCGAGGCAAAAATTCGGCAGCAGCAGCAGCAGCAAGGTC
GCGTCGAAGGCGAAGCACCCGTGGTGGAGTATGAGCTAGCGTCTTTCCGC
CGCACGATTTCCTCGGCCGGTGAGGACGATACTGTCTACAGCGATGAGGA
CGATGTGGGTCTAGACGACCTGTCGTTGGAGGACATGCCCACGGATCTGC
AGGTATTGTGTCGTCACCTGCGGGCTGAGAGCCTTGCGTTGGCCGCCGAG
GAGAGCAAGCAAGCCACCGATGGGAAAGGAGAGGTGAAAGGGGATGGAAA
TTCCACCACCACAAAGAAAGAGCAGGATGAACGCCGTCGTCGTCGGCGTG
AGCGGCGCCGACAGGAGCGTCGTCTTTTGCTGAAGCATGCGGAGGAGGAG
GGACGGGGAATTCACGGATTTTTGCTGTTCGCCTGGCCGATAGGGACGCG
CGAGCTGCTATTTTGGGCGTTGCTGGTGGTGTTCATGACAACGCTGATTA
CATTGAGCGAGGGACAGCACACGCGGGCGGTAAATACCACGGTGACTCGA
GGAGCTCGAGGGGTAGGAGGGCGAGGGACTGATGCGTTGGGAGGGGAGGG
AGGGCAGGGCGCGACCCCGCTCTTCGTCTTTGACAATGTGGCCACAGCCG
TTGCTGCTGCGGCATCATTTCAGCAACATTATCCGTCTTTCCTTCCTACG
TATGAGGGTGGTCGCCAGGCGCACAGTAGCCTTTCTCCGTACACAGAAAT
TGCCTTGCTGAAGGGCCAGCTCCGGGCGCAGGCGTCTCTGACCCGGGATA
GGGAGGAGGAGCTGAAGTGGATGCGAGTGCAGCAGCAGCAGCTGGAGGGA
AAGGCGCAGGAACTGGCATGGTCGCGTATGCAACAGCAGCAGTTGGAGGA
GAAGGTGGAGGCGTTGTCCCGAGCGTTGGAGGAAAAGGAGTTGTGCTTGG
CTCGACGGGGGGGCAAGGAGGAAGAGATTGAGGGAAAGGAGGAGAAGGAG
GAACCGATGACTTTGAATGTGGTACCGGAGGTGCGCACGGTAAAGGTGGA
AGGAAGTGCGGAAGAGGGGGAATGGATGTGGTGGTGGGGCTCCGATCGGA
ATGAGCACAAGACCCGGGCGCGGGAAGCAATGGCGAGCTCGAAGGAGGGA
GGGAGGGAGGAAGGGTTCGGTCGTCCTACATTCACGATTTCTCCGGGAGT
TTTCACGACAAGGAGGGAGAAGAAGGAGAAGGAGGATGAGGAGTGGTGGA
ATGATTGGGAAAGCGGCGGTGATTGGTGGTCAGAGGAAGAAGACGATGGT
TATTGGGAGGAGGAGGTGGAGGAGGAGGAGGAGGAAGTGGAGGAGGAAGG
GGAGGAGGAGGGCGGATTTTGGTGGAGCGACGCCGTGTTGAAAAAGGAGG
GAATAAAGGATGTAGAGGAAAAGATTTGCCTTGCTGCGTGTGGGGTCCCT
GATAGGTTTCAAGCAACCACGAAGAAGCGAGGGAGAGGGAGGGAGTTGGT
GGAGGCGGAGGGTGTGTGTGCGGTACAGTCTGTGTTTGGCTTTTTCTAGG
GGAAGGAAAGGGGAGAAAGAGGGAGGAAGGGAGGGCGAGGGAGGAAAGAT
GACTATTTGTATATGTTTGTGTGGGGGCGTTAGATTTTTTGTAAGTGTGA
AGGGAGAGAGGAAGGGAGAGAAGAAGGGAAGGAGGGAAGGGAGGAGTATA
ATTGCATGCCGCACGGGCTTAGACGTTTTCCTCCTGCTTTTAGTCTCCTT
TCTCAGAAGCTGCTCCTGATTTGACGCCCCCACACAGTGTATGGAGTGAA
AGAAGGGAAAGCGAAAACGTAGTGAGGGAAAGCGAAAATGTAGTGAGGGA
AAGCAAGCGAATGACATTTCTGCAATACATGCATGGTGTGTGTGCGCGCG
CGTGTGTGTGCTGGTTCTAGGGGGGCGCCGGAGGAAGACCAGTTGCGTGA
AGTGCAGAGAGATACAGAGCGGTTAGGGGCAGTTGCAGCTCTCGTACCAT
TTATTAATTCATATTCACATGCATGTTAAGATATATGCAGTATATCTGCA
GGGTCAGTGAAGTCATTAAGGATGAGGGAAAGGGCTCATCGAGGTCATCC
TCGTCAGTACGAAGGGAAGAAGAGGTTGAAAAGCGAGATGACAGAGGAAG
CCGAAGATTGAATGAGTAATGAAATAATTGGAGGAGGAAATGCCTGTTTT
TTGATAACTGGATATTGCTCGAGAAGAGAGGCCTCGGGACTCACCCACAT
GCGGACTCGAACAAGACTCCCAAGACTTAAACGTAGGCACGTCCACGAAA
GGGAGGGATTGATCGACGACGAGGTGAGAAAGAGGGAGGGGAGGGCAGGC
GACGAGAGAGAGACAAAAAGACACCCCCAGCACTTTTTGGAAAAGACAAA
AAAGCAGAAAACTAAAGAGACTTCAGGCATCTCAC
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protein sequence of NO05G04770.1

>NO05G04770.1-protein ID=NO05G04770.1-protein|Name=NO05G04770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MAPAGGEKKSNEGFVLLEETEAIEAKIRQQQQQQGRVEGEAPVVEYELAS
FRRTISSAGEDDTVYSDEDDVGLDDLSLEDMPTDLQVLCRHLRAESLALA
AEESKQATDGKGEVKGDGNSTTTKKEQDERRRRRRERRRQERRLLLKHAE
EEGRGIHGFLLFAWPIGTRELLFWALLVVFMTTLITLSEGQHTRAVNTTV
TRGARGVGGRGTDALGGEGGQGATPLFVFDNVATAVAAAASFQQHYPSFL
PTYEGGRQAHSSLSPYTEIALLKGQLRAQASLTRDREEELKWMRVQQQQL
EGKAQELAWSRMQQQQLEEKVEALSRALEEKELCLARRGGKEEEIEGKEE
KEEPMTLNVVPEVRTVKVEGSAEEGEWMWWWGSDRNEHKTRAREAMASSK
EGGREEGFGRPTFTISPGVFTTRREKKEKEDEEWWNDWESGGDWWSEEED
DGYWEEEVEEEEEEVEEEGEEEGGFWWSDAVLKKEGIKDVEEKICLAACG
VPDRFQATTKKRGRGRELVEAEGVCAVQSVFGFF*
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Synonyms
Publications