NO05G04710, NO05G04710 (gene) Nannochloropsis oceanica

Overview
NameNO05G04710
Unique NameNO05G04710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3055
Alignment locationchr5:1225401..1228455 -

Link to JBrowse

Properties
Property NameValue
DescriptionNMD3 family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1225401..1228455 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007064NMD3
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
BLAST of NO05G04710 vs. NCBI_GenBank
Match: EWM27960.1 (NMD3 family protein [Nannochloropsis gaditana])

HSP 1 Score: 491.9 bits (1265), Expect = 1.900e-135
Identity = 252/383 (65.80%), Postives = 292/383 (76.24%), Query Frame = 0
Query:    1 MEATEIPLTRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGR--EXXXXXXXXXXXXXXXXXXXXXXXKWGLAEVEVVK 382
            ME T IPLTRTAARVLCPLCGLSMESNAANRCGNCVR+EI+LQ ++ P  PLIQCK CF W+ KSKHWVAA+LESRELL LVLKF+PGL KG               MEVVEAGWIWTEPHSKRL++KLTVRKEVLNG+ VQQRVQAEFVVRT+QC+ACAL++TEQ WKAVCQ+RQRV HKRTFFFLEQLLLAR+MESK+LD+EL + G+DLYF DKNTA+QFL+FLQ  VPMR+KT+RKL++EDRQNNVHRSQWSM+V+IVPLCKDDL                 +QG VLVSRVT+VV  LD  TLK  EM+A +Y++ P+EC+M S DLI YEVLDV+L+  R  E                       KW LAEVE++K
Sbjct:    1 METTAIPLTRTAARVLCPLCGLSMESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKG-----GSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFVVRTIQCDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWSMSVDIVPLCKDDL--------CFLPPGGGGVQGLVLVSRVTAVVQFLDPLTLKTGEMTAAKYWKAPVECLMQSGDLIPYEVLDVELIRPRRGEGKGGRDKGQRKAGYPEGGNGPSRKWQLAEVEIIK 370          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: XP_005854938.1 (60s ribosomal export protein, partial [Nannochloropsis gaditana CCMP526] >EKU21426.1 60s ribosomal export protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 350.5 bits (898), Expect = 6.900e-93
Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 0
Query:   24 MESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWS 257
            MESNAANRCGNCVR+EI+LQ ++ P  PLIQCK CF W+ KSKHWVAA+LESRELL LVLKF+PGL KG               MEVVEAGWIWTEPHSKRL++KLTVRKEVLNG+ VQQRVQAEFV     C+ACAL++TEQ WKAVCQ+RQRV HKRTFFFLEQLLLAR+MESK+LD+EL + G+DLYF DKNTA+QFL+FLQ  VPMR+KT+RKL++EDRQNNVHRSQWS
Sbjct:    1 MESNAANRCGNCVRNEIDLQGEIKPSRPLIQCKQCFHWQAKSKHWVAAELESRELLALVLKFVPGLHKG-----GSGPRGGDGPMEVVEAGWIWTEPHSKRLKLKLTVRKEVLNGVMVQQRVQAEFV-----CDACALSYTEQAWKAVCQLRQRVTHKRTFFFLEQLLLARKMESKILDMELTRHGMDLYFGDKNTALQFLAFLQTAVPMRSKTTRKLIAEDRQNNVHRSQWS 223          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: XP_008865506.1 (hypothetical protein H310_03429 [Aphanomyces invadans] >ETW05729.1 hypothetical protein H310_03429 [Aphanomyces invadans])

HSP 1 Score: 277.3 bits (708), Expect = 7.400e-71
Identity = 139/325 (42.77%), Postives = 206/325 (63.38%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLD 340
            +LC +C + +++NAAN C +C++ ++++   +     + QC+GC KW      WV+ADLESRELL + LK + GL K                +++V+AGWIWTEPHSKRL++KLTV+KEV+NG  +QQ     F+VR  QC+ C  +FT  +WKAV QVRQ+VEHKRTFFFLEQL+L  R+  K   IE   DG+D +F ++N A++F+ FLQ  VP+  KT++KL+S D  +N    +++ AV+I P+CKDDLV                +    LV++VTS +H++D  T++RAE+   +Y++ P + + +SK L  Y VLD
Sbjct:   12 ILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKW--SRPQWVSADLESRELLAICLKKITGLNK----------------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISLKTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLV----ALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLTEYTVLD 314          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: OQR85458.1 (60S ribosomal export protein NMD3 [Achlya hypogyna])

HSP 1 Score: 275.8 bits (704), Expect = 2.100e-70
Identity = 135/325 (41.54%), Postives = 208/325 (64.00%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLD 340
            +LC +C + +++NAAN C +C++ ++++   +     + QC+GC KW      WVAA+LESRELL + LK + GL K                +++V+AGW+WTEPHSKRL++KLTV+KEV+NG  +QQ     F+VR  QC+ C  +FT Q+WKAV QVRQ+V+HKRTFF+LEQL+L  R+  K   IE   DG+D +FS++N A++F+ FL   VP++ KT++KL+S D  +N    +++ AV++  +CKDDLV                +    LV++VTS +H++D  T++RAE+   +Y++ P + + +SK L+ Y VLD
Sbjct:   12 ILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKW--SRPPWVAAELESRELLAICLKKISGLNK----------------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNQSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTTSIESHPDGVDFFFSERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTENYKFTYAVDLATVCKDDLV----ALPLKLARQLGNISSLCLVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLD 314          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: XP_009823848.1 (hypothetical protein H257_02059 [Aphanomyces astaci] >ETV87049.1 hypothetical protein H257_02059 [Aphanomyces astaci])

HSP 1 Score: 274.2 bits (700), Expect = 6.200e-70
Identity = 136/325 (41.85%), Postives = 207/325 (63.69%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLD 340
            +LC +C +++++NAAN C +C++ ++++   +     + QC+GC KW      WV+ADLESRELL + LK + GL K                +++V+AGWIWTEPHSKRL++KLTV+KEV+NG  +QQ     F+VR  QC+ C  +FT  +WKAV QVRQ+VEHKRTFFFLEQL+L  R+  K   IE   DG+D +F ++N A++F+ FLQ  VP+  +T++KL+S D  +N    +++ AV+I P+CKDDLV                +    LV++V+S +H++D  T++RAE+   ++++ P + + +SK L  Y VLD
Sbjct:   13 ILCCICAVAIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKW--SRPQWVSADLESRELLAICLKKITGLNK----------------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFIVTFIVRNQQCDDCQASFTNHSWKAVVQVRQKVEHKRTFFFLEQLILKHRVHEKTTSIESQPDGVDFFFVERNHALRFVDFLQETVPISIRTAKKLISADNHSNTANYKFTYAVDIAPVCKDDLV----ALPLKLARQLGNISSLCLVTQVSSSIHVIDPFTMQRAEIDNDKFWRTPFKALRSSKQLTEYTVLD 315          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: OQS02570.1 (60S ribosomal export protein NMD3 [Thraustotheca clavata])

HSP 1 Score: 270.4 bits (690), Expect = 9.000e-69
Identity = 134/325 (41.23%), Postives = 206/325 (63.38%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLD 340
            +LC +C + +++NAAN C +C++ ++++   +     + QC+GC KW      WVAA+LESRELL + LK + GL K                +++V+AGWIWTEPHSKRL++KLTV+KEV+NG  +QQ     F+VR  QC+ C  +FT  +WKAV QVRQ+V+HKRTFF+LEQL+L  R+  K   IE   DG+D +F ++N A++F+ FL   VP++ KT++KL+S D  +N    +++ AV+I  +CKDDLV                +    +V++VTS +H++D  T++RAE+   +Y++ P + + +SK L+ Y VLD
Sbjct:   12 ILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKW--SRPPWVAAELESRELLAICLKKISGLNK----------------VKLVDAGWIWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTTSIESHPDGVDFFFVERNHALRFVDFLHETVPIKLKTAKKLISADNHSNTANYKFTYAVDIATVCKDDLV----ALPLKLARQLGNISPLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVDYTVLD 314          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: XP_008611919.1 (nonsense-mediated mRNA decay protein 3 [Saprolegnia diclina VS20] >EQC34513.1 nonsense-mediated mRNA decay protein 3 [Saprolegnia diclina VS20])

HSP 1 Score: 269.6 bits (688), Expect = 1.500e-68
Identity = 132/325 (40.62%), Postives = 206/325 (63.38%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLD 340
            +LC +C + +++NAAN C +C++ ++++   +     + QC+GC KW      WVAA+LESRELL + LK + GL K                +++V+AGW+WTEPHSKRL++KLTV+KEV+NG  +QQ     F+VR  QC+ C  +FT  +WKAV QVRQ+V+HKRTFF+LEQL+L  R+  K   IE   DG+D +F ++N A++F+ FL   VP++ KT++KL+S D  +N    +++ AV++  +CKDDLV                +    +V++VTS +H++D  T++RAE+   +Y++ P + + +SK L+ Y VLD
Sbjct:   12 ILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKW--SRPPWVAAELESRELLAICLKKISGLNK----------------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLV----ALPLKLARQLGNISSLCIVTQVTSSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLD 314          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: XP_004357685.1 (60S ribosomal export protein [Cavenderia fasciculata] >EGG19414.1 60S ribosomal export protein [Cavenderia fasciculata])

HSP 1 Score: 268.5 bits (685), Expect = 3.400e-68
Identity = 136/339 (40.12%), Postives = 209/339 (61.65%), Query Frame = 0
Query:    9 TRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGRE 348
            T+  + +LC +CG+ + +N +N C +C+RS++++   +     +  C+GC ++     HW A +LESRELLTL +K + GL K                +++V+AGW+WTEPHS+RL+VKLT++KEV     +QQ    EFVV   QC +C     + TW AV Q+RQ+V+HKRTF FLEQ++L     S+ L+I+   DGLD YF++KN A +F+ F+ A+ P+R+K S +L+S D QNN    + S +VEIVPLCKDDLV                +   VLV++V++V+H++D ++L+ AE+S+T ++  P   +   K +I + VLDV L G R+
Sbjct:    6 TQKESHILCCICGVLIAANPSNMCVDCIRSQVDITEGIPKQLMVQWCRGCNRYLQPPNHWAACELESRELLTLCIKRIKGLTK----------------VKLVDAGWVWTEPHSRRLKVKLTIQKEVFASAILQQVFIVEFVVSGQQCTSCQRLDAKDTWNAVVQLRQKVDHKRTFLFLEQVILKHNAHSQALNIKERSDGLDFYFANKNHASKFVEFISAIAPVRSKKSEQLISHDEQNNTANHKHSNSVEIVPLCKDDLV----CLPPKLMTSLGGIGPIVLVTKVSNVIHIIDPNSLQTAEISSTSFWNTPFRAITGYKQMIEFTVLDVSLTGERK 324          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: XP_012195053.1 (hypothetical protein SPRG_01450 [Saprolegnia parasitica CBS 223.65] >KDO34280.1 hypothetical protein SPRG_01450 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 267.7 bits (683), Expect = 5.800e-68
Identity = 131/325 (40.31%), Postives = 205/325 (63.08%), Query Frame = 0
Query:   15 VLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLD 340
            +LC +C + +++NAAN C +C++ ++++   +     + QC+GC KW      WVAA+LESRELL + LK + GL K                +++V+AGW+WTEPHSKRL++KLTV+KEV+NG  +QQ     F+VR  QC+ C  +FT  +WKAV QVRQ+V+HKRTFF+LEQL+L  R+  K   IE   DG+D +F ++N A++F+ FL   VP++ KT++KL+S D  +N    +++ AV++  +CKDDLV                +    +V++V S +H++D  T++RAE+   +Y++ P + + +SK L+ Y VLD
Sbjct:   12 ILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKW--SRPPWVAAELESRELLAICLKKISGLNK----------------VKLVDAGWVWTEPHSKRLKLKLTVQKEVMNGAILQQSFVVTFIVRNQQCDECQASFTNNSWKAVVQVRQKVDHKRTFFYLEQLILKHRVHEKTSSIESHPDGVDFFFVERNHALRFVDFLSETVPIKLKTAKKLISADNHSNTANYKFTYAVDLATVCKDDLV----ALPLKLARQLGNISSLCIVTQVASSIHVIDPFTMQRAEIDNDKYWRYPFKALRSSKQLVEYTVLD 314          
BLAST of NO05G04710 vs. NCBI_GenBank
Match: CEI98101.1 (hypothetical protein RMCBS344292_12218 [Rhizopus microsporus] >ORE19693.1 NMD3-domain-containing protein [Rhizopus microsporus])

HSP 1 Score: 267.3 bits (682), Expect = 7.600e-68
Identity = 134/334 (40.12%), Postives = 206/334 (61.68%), Query Frame = 0
Query:   11 TAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVGPLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGXXXXXXXXXXXXXXXMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFVVRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKVLDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNVHRSQWSMAVEIVPLCKDDLVXXXXXXXXXXXXXXXXLQGFVLVSRVTSVVHLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVG 345
            T   +LCP CG     NAAN C NC+R+E+++   +     +  C+ C ++      WV A+LESRELLTL LK L GL +                + +V+AG+IWTEPHS+R++VKLT++KEV     +QQ  + E+VV + QC+ C     + TWKAV QVRQ+VEHKRTF FLEQ++L         +I+  KDG+D Y+  +N A++ + FLQAVVPMR KTS +L+S+D   +V   +++ + EIVP+C+DDLV                +   ++ +R+++ +HLLDV+TL  A++S T+Y+++P + + ++K ++ Y VLDV+ +G
Sbjct:    8 TEQLILCPGCGAPTPPNAANMCVNCIRNEVDITEGIPKHATIHFCRNCERYLQPPGIWVTAELESRELLTLCLKKLKGLNR----------------VRLVDAGFIWTEPHSRRIKVKLTIQKEVFANTILQQVFEVEYVVSSQQCDECTRLAAQNTWKAVVQVRQKVEHKRTFLFLEQIILKHNAHKDTTNIKEAKDGIDFYYGSRNHAIKMVEFLQAVVPMRYKTSEQLISKDIHTSVSNYKFTYSCEIVPICRDDLV----CIPKKLANNFGNINRLLICTRISNSIHLLDVNTLATADVSTTQYYRQPFQALASAKSMVEYYVLDVEPLG 321          
The following BLAST results are available for this feature:
BLAST of NO05G04710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27960.11.900e-13565.80NMD3 family protein [Nannochloropsis gaditana][more]
XP_005854938.16.900e-9373.3960s ribosomal export protein, partial [Nannochloro... [more]
XP_008865506.17.400e-7142.77hypothetical protein H310_03429 [Aphanomyces invad... [more]
OQR85458.12.100e-7041.5460S ribosomal export protein NMD3 [Achlya hypogyna... [more]
XP_009823848.16.200e-7041.85hypothetical protein H257_02059 [Aphanomyces astac... [more]
OQS02570.19.000e-6941.2360S ribosomal export protein NMD3 [Thraustotheca c... [more]
XP_008611919.11.500e-6840.62nonsense-mediated mRNA decay protein 3 [Saprolegni... [more]
XP_004357685.13.400e-6840.1260S ribosomal export protein [Cavenderia fascicula... [more]
XP_012195053.15.800e-6840.31hypothetical protein SPRG_01450 [Saprolegnia paras... [more]
CEI98101.17.600e-6840.12hypothetical protein RMCBS344292_12218 [Rhizopus m... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003381NSK003381Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04710.3NO05G04710.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04710.2NO05G04710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO05G04710.1NO05G04710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553919gene_3288Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g135gene2634Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04710.3NO05G04710.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04710.2NO05G04710.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO05G04710.1NO05G04710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04710 ID=NO05G04710|Name=NO05G04710|organism=Nannochloropsis oceanica|type=gene|length=3055bp
ATCTAATGCCGCCCATTCGCCCTTCGATCGCAAGACTCAGCGATGAGCCT
GAGATGCTACGGGGGAGGAGAAGATTAAGTGGCCCTCATACCACCTTTTC
AATTACCAGCACAGATAGAAGCGCCAGCCATACTTCTCTTGGTTGCATGC
CCGCGGAGCCTTGGACTGGACGACAATTGGTATGACACGGTTATCCTGTC
GACAATGACGGGACGGCTCGTAATGTCAAACTGTAGCATCACCAGCTTCA
GCGCCGTGGCCCGGGCACGCCCCAAGCTCTAACATGAAGCAGCCCATTGA
CATGATAATGCTTGTGGCAGCGTGGGCATCTGTTTTGTAATTGTGCCAAT
TGACAGTGGCTGTCCAATGCTCATTAAGCCCGCACCACGTTCCCTTGACT
ACAGCCACGGCCACGTTTCTCTGCTTGTTGCCCTTTGTATCGTGCGCTTT
CTTTCGAGGAGGCACAACGAGGAGGGTTTACGGTGGTGCAACTTGTCGCG
ACTACCCTTTTGCACACACCCCTTCCCATATTCTCAGTCCCACTCCCCCC
CTCCCTTCCGTCAATCATCTCTGTATCCAGGTTTCACGACCCCCAATCAT
GGAAGCGACCGAAATTCCTCTCACTAGGACGGCAGCCCGTGTCCTCTGCC
CCCTCTGTGGTCTGTCCATGGAGAGCAATGCCGCCAACCGTTGTGGGAAC
TGTGTCCGAAGCGAAATCAACCTTCAAGCAGATGTCGCGCCCGTGGGGCC
TTTGATTCAGTGCAAAGGCTGTTTCAAATGGCGGACGAAGTCGAAACATT
GGGTGGCGGCTGACTTGGAGTCAAGAGAACTTTTGACACTTGTCCTCAAA
TTTTTGCCAGGACTGCAAAAGGGGGGAGGGACCGGGGGAGAAGCCGGGGG
AGGGGCCGGGGGAGGAGGGATGGAAGTGGTGGAGGCGGGATGGATTTGGA
CGGAGCCGCATTCGAAGCGGCTGAGGGTGAAACTGACGGTGAGGAAGGAA
GTGTTGAACGGGATCACTGTGCAACAGCGGGTGCAGGCGGAGTTTGTGGT
GCGGACGATGCAGgtgaagatgatgggagggagggagaggaagggagggg
gagaggtagagataggcttatatagttacggcatcgtccagatttggtgc
ttgcctctattacattaagttggtttatgaaaagacaaagatgattataa
ctcatgcaaccgctcaccctatctctccctcgctccttccctcgctccct
ccctcaccttcccctccccttcctcagTGCGAAGCCTGCGCGCTAACCTT
CACGGAACAAACCTGGAAGGCTGTCTGCCAAGTGCGTCAACGCGTGGAGC
ACAAACGCACCTTTTTTTTCCTGGAGCAACTGCTGCTTGCTCGTCGCATG
GAAAGCAAAGTCCTCGATATCGAGCTGGTCAAAGATGGCCTCGATCTATA
CTTCAGTGATAAGAATACCGCGGTGCAATTCTTGTCCTTCTTGCAGGCCG
TCGTCCCGATGCGGACCAAAACGAGCCGGAAGCTTGTGTCGGAAGATAGG
CAAAATAACGTGCACAGAAGTCAATGGTCCATGGCTGTGGAAATCGTGCC
CTTGTGCAAGGATGACTTGGTGTTGTTGTTGCGAGGGGGCGGAGGGAGGG
AAGGAGGGACAGGCGGGGGGTTGCAGGGCTTCGTGCTGGTGTCGCGGGTG
ACGAGTGTGGTCCATTTGCTCGATGTCAGCACGTTGAAGAGGGCGGAGAT
GTCGGCAACAAGGTATTTCCAGCGGCCTCTGGAGTGTGTCATGACCAGTA
AGGACCTCATTTCGTATGAGGTTCTGGATGTAGATCTGGTGGGCGGGAGA
GAGGGAGGGAGGGGTGGAGGAGGAGAAGGACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCACGCAGCGGCGAAGTGGGGATTGGCAGAGGTGGAGGTTG
TCAAGgtaggtatagagggaggggaaggggaggatggggggaggaagagg
cttgattgcctagcagtatgaatgtacatataaatagttcgactatgtac
ataaatctatacatgtagatttagttcgacaagacccatgagagtcttga
taattccttatgcacagACGTCGGACTTCGGAGTGCGTGATGTGAGCTAT
CGAGTCATGACGCACTTGGGCCACGTGTTGCAGgttggaaggagggcggg
agggaaggaagaaagggaggagggagggggggttgtgaatggggggaaat
cggcgcatgaaagaaaaaccacgtcaaaaaaatcaccctctcattcacct
ccatgtctccctccttttatcccgtcctccctcctcccctcctcccctcc
tctcctcctccagGTGGGCGACACGGTCCTCGGGTATGACCTCGTGAACG
CCACGGCCTTGGGCGGGAGGGAGGAAGAGTTGCAGGGGCTGCGGTACGAT
CCTCCAGATGTGGTACTAGTCAAGAAAGTGGACGTGGAGGGGAAGAGCGC
AAAAAAAGAGAAGAAGAGATTGAAGCGCCTGCGGTCAAGAAGAGCGGCAC
GGGCCGCGGGGAAAGAGGAGGTGAGGAGGAAGGAGAGGGAAAGGGAGAAG
AGGGAGGGAAGGAGGGAAGGAGGGGGGGAAGATGAGGGGGAGGAGGCAGA
GTTTTTGGCGTTTGCGGCGGAATTGGAGGAAGACTTCGATATGCAGGCTC
TGTTGTCGCAGCAGGAGAATGAGGCGAAGAGGTGGTTGGGGGAAAAGGAG
GAGGGGGAAGATGACGTAGACAAGGGGGGGGGGAGGGATCACGAGGAGGA
TTTCGAGGAGGAAGGGTAGTTTTAGAAAGAAGAAATTGGAGCAAAGGAAG
GGAGGAACAAGTGGAAATGTGAGTGTATACAATTAGGCGCAGCGTTGTCG
TTGTCAAGAAGGTGGTTGACAACAGGATGAGTTAGTTTGCAGACAGGGAA
GGAATGTGAGGGGGCCCAATATATTGATAACCGCTCTATGGTGACGACAA
TTGAAAGACGGCAACAACAACAAAATGAACAGCACCCACAAAAGGACTAA
TCCCC
back to top

protein sequence of NO05G04710.3

>NO05G04710.3-protein ID=NO05G04710.3-protein|Name=NO05G04710.3|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MEATEIPLTRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVG
PLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGGGTGGEAG
GGAGGGGMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFV
VRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKV
LDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNV
HRSQWSMAVEIVPLCKDDLVLLLRGGGGREGGTGGGLQGFVLVSRVTSVV
HLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGREGGR
GGGGEGQQQQQQQQQQHAAAKWGLAEVEVVKTSDFGVRDVSYRVMTHLGH
VLQVGDTVLGYDLVNATALGGREEELQGLRYDPPDVVLVKKVDVEGKSAK
KEKKRLKRLRSRRAARAAGKEEVRRKEREREKREGRREGGGEDEGEEAEF
LAFAAELEEDFDMQALLSQQENEAKRWLGEKEEGEDDVDKGGGRDHEEDF
EEEG*
back to top

protein sequence of NO05G04710.2

>NO05G04710.2-protein ID=NO05G04710.2-protein|Name=NO05G04710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MEATEIPLTRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVG
PLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGGGTGGEAG
GGAGGGGMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFV
VRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKV
LDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNV
HRSQWSMAVEIVPLCKDDLVLLLRGGGGREGGTGGGLQGFVLVSRVTSVV
HLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGREGGR
GGGGEGQQQQQQQQQQHAAAKWGLAEVEVVKVGIEGGEGEDGGRKRLDCL
AV*
back to top

protein sequence of NO05G04710.1

>NO05G04710.1-protein ID=NO05G04710.1-protein|Name=NO05G04710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MEATEIPLTRTAARVLCPLCGLSMESNAANRCGNCVRSEINLQADVAPVG
PLIQCKGCFKWRTKSKHWVAADLESRELLTLVLKFLPGLQKGGGTGGEAG
GGAGGGGMEVVEAGWIWTEPHSKRLRVKLTVRKEVLNGITVQQRVQAEFV
VRTMQCEACALTFTEQTWKAVCQVRQRVEHKRTFFFLEQLLLARRMESKV
LDIELVKDGLDLYFSDKNTAVQFLSFLQAVVPMRTKTSRKLVSEDRQNNV
HRSQWSMAVEIVPLCKDDLVLLLRGGGGREGGTGGGLQGFVLVSRVTSVV
HLLDVSTLKRAEMSATRYFQRPLECVMTSKDLISYEVLDVDLVGGREGGR
GGGGEGQQQQQQQQQQHAAAKWGLAEVEVVKVGIEGGEGEDGGRKRLDCL
AV*
back to top
Synonyms
Publications