NO05G04570, NO05G04570 (gene) Nannochloropsis oceanica

Overview
NameNO05G04570
Unique NameNO05G04570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3102
Alignment locationchr5:1183801..1186902 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1183801..1186902 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04570 vs. NCBI_GenBank
Match: EWM28035.1 (hypothetical protein Naga_100008g114 [Nannochloropsis gaditana])

HSP 1 Score: 539.7 bits (1389), Expect = 1.700e-149
Identity = 379/876 (43.26%), Postives = 463/876 (52.85%), Query Frame = 0 
Query:    1 MYNLGEKKSFINDLASKLLGGQAILGTGHHHHRNLTTQ--------VLSLEDLVLFKIQEFRLQFLAKCLQIHTLSGKNHLVLSLTHFDLLTDVLRVILREANNQEDHLSIRMVYLVSELSGTYLGHGGQGGHLFLRTLKMALSKHEAWQNLGFYEHVLDECVARDKQHWMHLQGPLSEILSFEIHNEEIIALLLSFRFKALLGAIEQLKMGEEGGQVKEGLIEGLLDYCRRVHGVEFERGQVMGPLETPFMLWLLDVAVRAWQLPKLEEGGAGGLEKGDASQSRGSSCSGSRG------GGVETYVQTMRRRSSLSSMACSTTAKSSVSNMLRWAIEVTTRAAHGSSLGFSIHHELLRFVLDRLAANPQKINLLSQSAFPSSGNDNCRSSSSNNGSRSDSGLCLCGRSRRVWRVLGGYGEQLENIRRFLPLLLCEGCFRTVCHDRSMELLRPQQTVGMAPLPASEIWTPMSISEFVFPRPCSFSVEM-----------GQRLPSQCRGERETEKKEGLQRRISLXXXXXXXXXXXXXXXXXXXXXXXVEAAAPVMTPRMPTIHSMRSSKCRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSXXXXXXXXXXXXXXXXSLQSTARANRRSSSGPRDATMVSASRRREERENMHLTLLREEGMEVLKHGRFGCVIPHYRFLFVDREELYWCRREXXXXXXXXXXXXXXXXXXXXXXXLRNLMQVKLKKRARIVSLEFKERSLVVEALGGEEFDVLAGIFTRVMSENMGGNRGPVVITRGKR 852
            MYN+GEKK+F+NDLA+KLLGG AILGT  H       Q        VL+LE+LVLFKIQ+FRLQFL+KCLQ+H LSGKN LVLSLTH+++LTDVLRVILREANN++D+LSIRMV+ +S L GTYLG GG+GGH  LRT+K AL  HEAW+N  FY  VLDEC+ARDKQHWMHLQGPL E    E+ NEEII+LLLSFR KAL  A+ +L       Q    ++E LL + R  HG   +   +  PL+   MLWL+DV VRAW LP L + G     +  A  +R  + SGS        GG   Y+ T+RRRSSLS+M  +TT KSS+SN+LRWA E T RA H +SLGFS+HHE+ RFV+DR+ ANP+KINL +    P          S   G    S  CLC R  + WR+LGGY  Q E IRR+ P++LCE CFR   H   ++     Q VG+A LPA++   P SI  FVFP P     EM           GQ       G+  T ++ G++RR+S                                        S  S+    XXXXXXXXXXXXXXXXXXXX                                                                                                       F                 SL   ARANRR+S        V A RRRE R      LLRE GMEVLKHGRFGCV+PHYR LFVDREE+YWCRRE                       L +L++V+LKK ARIVSL F+ER+ VVEAL  E+FDVLA +FT VM++N+  +R P+VI+R +R
Sbjct:    1 MYNIGEKKAFVNDLATKLLGGDAILGTSPHXXXXXKFQGLQQNNNGVLTLENLVLFKIQDFRLQFLSKCLQLHALSGKNQLVLSLTHYEVLTDVLRVILREANNEQDYLSIRMVFFLSGLVGTYLGQGGRGGHSSLRTIKSALRTHEAWKNATFYLGVLDECLARDKQHWMHLQGPLQEFFCCEVKNEEIISLLLSFRLKALAKALLEL-------QAPSTILEELLVHVREKHGFAQKMEDLYAPLDLRHMLWLVDVLVRAWHLPTLADAGDSWDTEKSAEVTRPGTDSGSTRTDGSGLGGTVAYLDTLRRRSSLSAMVGTTTPKSSLSNVLRWASETTLRAGHSASLGFSLHHEIFRFVVDRVVANPRKINLRACVLPPGPA---VEGDSPGKGIPHPSA-CLCARPNKPWRILGGYEPQWEGIRRYTPVILCEVCFRLALHRGRLDQACFLQPVGIAALPATQSQRPESILAFVFPVPVPKVEEMEPNGKRENGKAGQEGDRGRGGKMVTTRRAGVRRRVS----------------------------------------STGSNSTSXXXXXXXXXXXXXXXXXXXXXNAQRNDSGRADGELSASRRADRNVTDAFPRGRALQGSTERRDSDDSTSGRSFSKTRGPGVHGAGASPYHVRSSSVSSALSYSPSTPGWTDPDHRGSHSRPVRRFE--GTRLSSSSAAGLSPSLSGHARANRRASG----EASVLAGRRREHR---GFDLLREGGMEVLKHGRFGCVVPHYRVLFVDREEVYWCRRE------EVGRKKKKAGARRGGLSLSHLLEVRLKKGARIVSLTFQERAFVVEALSDEDFDVLAAVFTAVMNDNVQDSRQPIVISRRRR 810
The following BLAST results are available for this feature:
BLAST of NO05G04570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28035.11.700e-14943.26hypothetical protein Naga_100008g114 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003399NSK003399Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04570.1NO05G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|402322gene_3273Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g114gene2619Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04570.1NO05G04570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04570 ID=NO05G04570|Name=NO05G04570|organism=Nannochloropsis oceanica|type=gene|length=3102bp
ACAGGCAGGAGGACACCCTCCTTCTCGCTCCTCGTCAACCTTCCTCCTCC
CTGTCTCGAAATCTTTATCACCACATTCACCCGCTGGTGTCGCCCACAAG
TTGAGAAACAGTCATGTACAACCTGGGCGAGAAGAAGgtgcgtgctggtt
gtgcgaggtggattgattgtctgagtgtgcggttggactttcaacggcga
aagatgggccgttccagtcctcgacttcatagccttcctggtgatgggaa
tccttgtagacaagctcttgtttgcatgcttggaaaacttaaaaggctcg
cagtgggctctcttcattgtctttcttcctccaacttcccctcgctcctc
accaatatctcctattattacgacatttctttcctcccttcatcctcctc
tcacctctccacgaaaccctaacccatccaactcctcttctcccctcaaa
gTCCTTCATCAACGACCTAGCTTCCAAACTTCTTGGAGGCCAGGCCATTC
TGGGCACCGGCCACCATCATCACCGCAATCTCACCACGCAAGTCCTCAGT
CTGGAGGACCTAGTCCTCTTCAAAATACAAGAGTTCCGGCTTCAATTCTT
GGCAAAATGTCTACAAATTCACACCTTGTCGGGGAAGAATCATTTGGTGC
TTTCCTTGACACATTTTGACCTGTTGACTGATGTCTTGCGGGTTATTTTA
AGGGAGGCGAATAACCAGGAGGACCACTTGAGTATTCGGATGGTGTACCT
CGTGTCAGAATTAAGTGGGACTTACCTTGGACATGGAGGGCAGGGTGGGC
ATCTGTTTTTGCGAACACTTAAGATGGCATTGAGCAAGCATGAGGCGTGG
CAGAATCTGGGATTTTATGAGCACGTGCTGGATGAGTGCGTGGCGAGGGA
TAAACAGCATTGGATGCATCTTCAGGGCCCCTTGTCCGAGATTCTTAGTT
TTGAGATTCACAACGAGGAGATCATTGCATTGTTGCTTTCGTTTCGATTC
AAAGCCTTGCTGGGCGCGATTGAGCAGTTGAAGATGGGAGAGGAGGGGGG
GCAGGTTAAGGAGGGATTGATCGAGGGGCTATTAGATTATTGCCGACGAG
TGCACGGAGTTGAGTTTGAGAGGGGGCAAGTCATGGGGCCTCTGGAGACG
CCGTTTATGCTCTGGTTGTTGGATGTGGCGGTGAGGGCGTGGCAGTTGCC
GAAGTTGGAAGAAGGAGGGGCAGGGGGGTTGGAGAAGGGGGATGCGAGTC
AGAGTCGTGGAAGTAGCTGTAGCGGGAGCAGGGGAGGAGGGGTGGAAACG
TACGTGCAGACGATGAGAAGGCGGTCCTCTTTATCGTCGATGGCGTGCTC
AACCACGGCCAAGTCATCTGTGAGTAACATGTTACGATGGGCCATCGAGG
TGACGACACGAGCTGCACATGGGTCTAGCTTGGGGTTCTCGATCCATCAC
GAACTCCTGCGCTTTGTCCTTGACCGACTAGCGGCCAACCCCCAGAAAAT
CAACCTGCTCTCGCAAAGTGCCTTCCCCTCCAGCGGTAACGACAATTGCA
GGAGCAGCAGCAGTAATAATGGCAGTAGAAGTGACAGTGGTTTGTGTTTG
TGTGGTCGCTCACGTAGGGTTTGGCGGGTCTTGGGAGGGTATGGAGAGCA
GCTTGAGAACATACGGCGCTTTCTCCCCCTCCTGCTTTGCGAGGGGTGCT
TTCGTACGGTGTGCCACGATCGATCAATGGAGCTGTTACGGCCACAACAG
ACGGTTGGGATGGCTCCGTTGCCTGCATCGGAGATATGGACCCCGATGTC
GATTTCCGAGTTTGTTTTTCCTCGGCCTTGTTCTTTTTCAGTAGAGATGG
GTCAGCGGCTGCCATCCCAATGTAGGGGAGAGAGAGAGACGGAGAAGAAG
GAGGGGCTGCAAAGGAGGATATCGTTGTCCAGCAGTAGCTGCCTTAGCAA
TAGTGGTAGTAGCAGCGGCAGTGGTAGCAGCGCGAGAGGGTCTGGTGTGG
AAGCTGCTGCTCCAGTCATGACTCCACGTATGCCCACCATTCACAGTATG
AGAAGCAGCAAGTGCAGGCTTTCTTCTTCCTCCACTTCCTCCACTTCCTC
TTCTCCTCGGCAGGCACGTCGACCTTCAGAGCAGCAACTGGCGCCAGGCC
GACGGAAGAGGAGCGAGGATGTTGGTTGCTCTTACTCCTCGAAGCCCTCC
TCTTTAGCAGCAACAACAGCAGCAACAGGAGCGGGCGACGATTCCAGCCC
TCCTTACCACGCACAATCACGACGGTATCGCAGCAGTAGCAGCGTGAGTA
GCACCTCGTCCTCCTCCGCCTCCCCCCGTAACCCCGCCTCCACCAAGATC
GACAACAGCAACCATCACACTGTCCGTAGAGACCAAGAACGCGCCTGCTC
CCGTATGTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCCCCTTCTCCTATC
CATCCTCCACTTCCGTCTCCATGCCTCTCTCGCACCCTCTTACCTCTTTG
CAGAGCACCGCCCGAGCGAATCGCCGTTCATCCTCAGGGCCAAGAGACGC
CACGATGGTATCGGCGAGTCGACGACGAGAAGAGAGGGAGAACATGCATT
TGACGCTCTTGAGGGAGGAAGGAATGGAAGTACTGAAGCACGGTAGATTT
GGATGTGTCATTCCTCACTATCGCTTTTTATTTGTGGATCGCGAGGAGCT
TTATTGGTGTCGAAGGGAGGAGGTGGGGAAGAGGAAGAGGCAGCAGCAGC
AGCAGCAACAGCAGAGGAGGGGAAAGGGGAGCTTATTGTTGCGGAATCTG
ATGCAAGTGAAGCTGAAGAAGAGAGCGAGGATTGTTTCTCTAGAGTTTAA
GGAAAGGTCATTGGTCGTGGAGGCGTTGGGGGGTGAAGAGTTTGATGTGC
TTGCGGGGATTTTCACAAGGGTTATGAGTGAGAATATGGGGGGAAACAGA
GGGCCGGTTGTGATCACTCGCGGGAAGAGGTATTAGGGAGGGAAGGAGGG
GGTGGACAGAAGGAGGCAAGGAATAAAGCGATGGTAAAAGGGTGGAAAAA
AATGGATAAGTTTAAGGATTTACATCGTGGTGCGCGTGCGGCTGGCTGTC
TG
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protein sequence of NO05G04570.1

>NO05G04570.1-protein ID=NO05G04570.1-protein|Name=NO05G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=853bp
MYNLGEKKSFINDLASKLLGGQAILGTGHHHHRNLTTQVLSLEDLVLFKI
QEFRLQFLAKCLQIHTLSGKNHLVLSLTHFDLLTDVLRVILREANNQEDH
LSIRMVYLVSELSGTYLGHGGQGGHLFLRTLKMALSKHEAWQNLGFYEHV
LDECVARDKQHWMHLQGPLSEILSFEIHNEEIIALLLSFRFKALLGAIEQ
LKMGEEGGQVKEGLIEGLLDYCRRVHGVEFERGQVMGPLETPFMLWLLDV
AVRAWQLPKLEEGGAGGLEKGDASQSRGSSCSGSRGGGVETYVQTMRRRS
SLSSMACSTTAKSSVSNMLRWAIEVTTRAAHGSSLGFSIHHELLRFVLDR
LAANPQKINLLSQSAFPSSGNDNCRSSSSNNGSRSDSGLCLCGRSRRVWR
VLGGYGEQLENIRRFLPLLLCEGCFRTVCHDRSMELLRPQQTVGMAPLPA
SEIWTPMSISEFVFPRPCSFSVEMGQRLPSQCRGERETEKKEGLQRRISL
SSSSCLSNSGSSSGSGSSARGSGVEAAAPVMTPRMPTIHSMRSSKCRLSS
SSTSSTSSSPRQARRPSEQQLAPGRRKRSEDVGCSYSSKPSSLAATTAAT
GAGDDSSPPYHAQSRRYRSSSSVSSTSSSSASPRNPASTKIDNSNHHTVR
RDQERACSRMSSSSSSSSSSPFSYPSSTSVSMPLSHPLTSLQSTARANRR
SSSGPRDATMVSASRRREERENMHLTLLREEGMEVLKHGRFGCVIPHYRF
LFVDREELYWCRREEVGKRKRQQQQQQQQRRGKGSLLLRNLMQVKLKKRA
RIVSLEFKERSLVVEALGGEEFDVLAGIFTRVMSENMGGNRGPVVITRGK
RY*
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Synonyms
Publications