NO05G04560, NO05G04560 (gene) Nannochloropsis oceanica

Overview
NameNO05G04560
Unique NameNO05G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1330
Alignment locationchr5:1182468..1183797 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1182468..1183797 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04560 vs. NCBI_GenBank
Match: XP_005855714.1 (hypothetical protein NGA_0605800 [Nannochloropsis gaditana CCMP526] >EKU20636.1 hypothetical protein NGA_0605800 [Nannochloropsis gaditana CCMP526] >EWM27966.1 hypothetical protein Naga_100008g113 [Nannochloropsis gaditana])

HSP 1 Score: 177.9 bits (450), Expect = 4.000e-41
Identity = 132/236 (55.93%), Postives = 161/236 (68.22%), Query Frame = 0 
Query:   40 DCRGQVFNEAAASVKHDRVD-XXXXXXXXXXXXXXXPLHTDMRAQRCKGNILESLSEISLENEDAEEGGA------WPQRPGGSMPSAARTMIELKAIEKVRNQINALNAVPSRGGASPAASYRSXXXXXXXGGKLSFALPSALDQATASFGGETETLASFDRMH---SGGGXXXXXXXXXXXXXXXXXXAVLSTKARQRKVVGTEREEAYNDRLTGRVVKHNKRKERMERLRRIY 266
            +CRG V NEAAASVK +  D       XXXXXXXXX LHTD R QR KG+ILESL EISL+NE+ + GG+       PQ    + PSAARTM+ELK I ++R  +N L+ VPSRGG +              GG+L+ A+ SAL+QATASFG ET +LA+F+RM        XXXXXXXXX         AVLS+KARQR++ G+E+EEAYND+L GR+VKHNKRKERMERLRR+Y
Sbjct:    5 ECRGMVLNEAAASVKSNGSDLDDDVSDXXXXXXXXXXLHTDPRGQRNKGDILESLLEISLDNEEGDIGGSRSTTSDLPQVK--NEPSAARTMLELKDIARMRQHVNVLDPVPSRGGFAAMKRGALGGRGIERGGQLTSAVSSALEQATASFGEETGSLAAFERMQXXXXXXXXXXXXXXXXMDSRGSGRKAVLSSKARQRRIAGSEKEEAYNDKLNGRMVKHNKRKERMERLRRMY 238
The following BLAST results are available for this feature:
BLAST of NO05G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855714.14.000e-4155.93hypothetical protein NGA_0605800 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003400NSK003400Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04560.1NO05G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585159gene_3272Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g113gene2618Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04560.1NO05G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04560 ID=NO05G04560|Name=NO05G04560|organism=Nannochloropsis oceanica|type=gene|length=1330bp
GGAACTCATCAGGCTGACAGCAGGCTTGGCATCTTCGGGTGCGGGTCCGA
TCTGGGGCCGAGATTTCGCATGCCAAATCTCATTGACCACCGGCGCAACC
ACGCTGGCAATGGGACGTGGGTGAGCACATCATTGTAATAGACATGTGAA
CTCTCCTTCGCCGTGGCCCTTTTCCAAATCTCTTTGTCTACAATCGGGAG
GGTGGGCGAGGTCGATCGACCTCCTTGCCCTCCTCTGATACCCTCCTCCG
GGAAAGACAAACCTAATGCGATTTCCACATCATCATAACCGCCGTAGGCG
TCCGTCTTCTTGCCTAACACGTCGGATCCTTTCTATTTGCCTCTATCTAG
CTCTTCACTGTCTCCGCAACATGTCTGGGGCGGATTGCCGGGGTCAGGTC
TTCAATGAAGCAGCGGCCTCCGTCAAGCACGACCGTGTAGATGACGACGA
CGAAAACACACACGACGCCCCCCCGCCGCCTCCGACGCCATTGCATACCG
ATATGCGTGCTCAGCGATGTAAAGGCAACATCCTGGAGTCGTTATCGGAA
ATCAGTCTGGAGAATGAGGATGCGGAAGAAGGCGGGGCCTGGCCGCAGCG
CCCGGGAGGGAGCATGCCTTCGGCGGCCAGAACAATGATCGAGCTTAAGG
CCATCGAGAAAGTGCGGAACCAGATAAATGCTTTGAACGCCGTGCCGTCT
CGAGGCGGGGCGAGTCCTGCGGCTAGCTACAGAAGTGGTGGAGGAGCAGC
AGCATCAGGAGGAAAGCTATCGTTTGCCTTGCCCTCGGCCTTGGACCAGG
CCACAGCTTCCTTTGGGGGGGAGACCGAGACGCTGGCGAGCTTTGATAGA
ATGCACAGCGGCGGCGGTAAAGGTCGGGGCCAAGGAGGGATTGGGAGCGG
CGGAAAGGGTTCAGGACGCAAGGCTGTGTTATCAACGAAAGCTAGGCAGC
GGAAGGTGGTAGGTACCGAGAGGGAGGAGGCGTACAACGACAGGCTGACA
GGTCGGGTGGTGAAGCACAATAAGCGTAAGGAGCGCATGGAGCGACTCCG
CCGTATTTATTGAACAATATGATTGATTGGTCCGAGATCGGGAAGGAGGG
AGCTGTAAAAATAATTGAAGGAGAGGAGGGAAGGAGAGAAATTAAGAAGC
TGAGAAGGGAAAGCTCACATGTAATCACGATGTCCGCAGCCAGCCAGCAA
AAACGTTAAACGAGAGCTAATGATATCAAAATACCGGAAGCTTTGCTTCC
AGTAACTGTTCTGCATTGGAAAACATCACACCACACCCAACAGAAGGAAG
GAAAGAAACAATCATGCAGTCAATGTACTT
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protein sequence of NO05G04560.1

>NO05G04560.1-protein ID=NO05G04560.1-protein|Name=NO05G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MRFPHHHNRRRRPSSCLTRRILSICLYLALHCLRNMSGADCRGQVFNEAA
ASVKHDRVDDDDENTHDAPPPPPTPLHTDMRAQRCKGNILESLSEISLEN
EDAEEGGAWPQRPGGSMPSAARTMIELKAIEKVRNQINALNAVPSRGGAS
PAASYRSGGGAAASGGKLSFALPSALDQATASFGGETETLASFDRMHSGG
GKGRGQGGIGSGGKGSGRKAVLSTKARQRKVVGTEREEAYNDRLTGRVVK
HNKRKERMERLRRIY*
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Synonyms
Publications