NO05G04490, NO05G04490 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04490 vs. NCBI_GenBank
Match: EWM27958.1 (Integral membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 264.6 bits (675), Expect = 1.900e-67 Identity = 127/149 (85.23%), Postives = 140/149 (93.96%), Query Frame = 0 Query: 1 MGAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVIDQT 150 MGA FDPK+I+YQIIALQCLYYLVEGGILMGFNL+FG DVS+ QIFTP+GLE+ SAEGLLNV+ALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFH LAC YESFP+TLLWW+CHLVG+S+MTLLGEHLCARSELRDIPLFV+ Q+ Sbjct: 1 MGAPDFDPKMIIYQIIALQCLYYLVEGGILMGFNLVFGLDVSLAQIFTPRGLEIESAEGLLNVLALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHLLACAFYESFPATLLWWLCHLVGVSIMTLLGEHLCARSELRDIPLFVVSQS 149
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_002293932.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED88941.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 139.4 bits (350), Expect = 9.100e-30 Identity = 68/141 (48.23%), Postives = 102/141 (72.34%), Query Frame = 0 Query: 6 FDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVI 147 F+P+LI+ QI+ALQ +YLV G IL +++F T V++ +IFT K L++ +A G ++ A+L+S + GSVLL +VE++KKCLDF VTLF H + C +Y+ PST WW+ H++G+ M +LGE+LC++ EL DIPL V+ Sbjct: 3 FNPRLILSQIVALQSFHYLVLGFILQVNHVLFATSVTVDRIFTAKYLDLWTALGWVDNAAVLVSSLVGSVLLVFIVEKSKKCLDFCVTLFLIHVIICSIYDGVPSTWDWWIVHILGMIAMVVLGEYLCSKRELSDIPLLVL 143
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_002186414.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >ACI65884.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 137.5 bits (345), Expect = 3.400e-29 Identity = 71/146 (48.63%), Postives = 99/146 (67.81%), Query Frame = 0 Query: 3 AQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAE--GLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLFVI 147 AQ F PKLI QI++LQC +Y + ++++GT V++ +IFT + L + +E G + IAL L+ + GSVLL V+VE++KKCLDF VTLF H L C +Y+ FP+ L WWV H++G VM LLGE+LC+R EL DIP+ I Sbjct: 30 AQPFYPKLIFAQIVSLQCFHYFLLAFFFQVNHVLYGTTVTIDRIFTDRYLRLWQSERSGWADAIALFLASLVGSVLLAVIVEKSKKCLDFGVTLFLLHLLLCSLYDGFPTILDWWVMHVLGTIVMVLLGEYLCSRRELDDIPILQI 175
BLAST of NO05G04490 vs. NCBI_GenBank
Match: CBN77349.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 127.5 bits (319), Expect = 3.600e-26 Identity = 62/139 (44.60%), Postives = 88/139 (63.31%), Query Frame = 0 Query: 6 FDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPLF 145 FDPKLIV QI+ALQ YY+ G L F +FGT V IF+ + + + + G + +L+ ++G++LL ++VERAKKCLDFT TL+ H C Y+ P WW+ + L++M +LGE+ C+R ELRDIPLF Sbjct: 4 FDPKLIVCQIVALQSFYYVAMGVFLGSFRAVFGTQVGTRLIFSGELVSLSTTAGWTAICCQVLTAISGALLLPMIVERAKKCLDFTSTLYIIHVAICSFYDGIPHNWEWWILQMASLALMVVLGEYACSRRELRDIPLF 142
BLAST of NO05G04490 vs. NCBI_GenBank
Match: KXZ56181.1 (hypothetical protein GPECTOR_1g156 [Gonium pectorale]) HSP 1 Score: 124.4 bits (311), Expect = 3.000e-25 Identity = 66/145 (45.52%), Postives = 98/145 (67.59%), Query Frame = 0 Query: 2 GAQAFDPKLIVYQIIALQCLYYLVEG---GILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144 GA +DP LI+ QI+ LQCL+YL G G+L+G ++ +S+ +F K +G+ G ++V++LLL+ V G+V L +VERAKKCLDF T F FHFL C ++ FP+ L WW+ +++GL +M+L GE LC R E+++IPL Sbjct: 4 GAAVWDPVLIIAQIVTLQCLFYLSLGLWQGLLLGPSV---GRLSIAHLFGWKLYSLGTYVGWMSVVSLLLTSVLGAVFLVWIVERAKKCLDFASTCFLFHFLFCWRHDGFPTRLEWWLANILGLVIMSLFGEWLCLRREMQEIPL 145
BLAST of NO05G04490 vs. NCBI_GenBank
Match: PIN09841.1 (Integral membrane protein involved in transport between the late Golgi and endosome [Handroanthus impetiginosus]) HSP 1 Score: 124.4 bits (311), Expect = 3.000e-25 Identity = 63/142 (44.37%), Postives = 89/142 (62.68%), Query Frame = 0 Query: 2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144 G A+DP LIV QI+ LQCLYY+ G L+ + +S+ F + +A G + ++ LS +AG+V L +VERAKKCLDF TL+ H C +Y +P+++ WWV H+ GL+VM LLGEHLC + ELR+IP+ Sbjct: 4 GTAAWDPWLIVAQIVCLQCLYYMSLGVFLVILVCSRVSRMSLVYFFDYATVTASTAIGWCVMASIFLSSIAGAVFLVYIVERAKKCLDFCATLYIIHLFICFIYGGWPASITWWVVHITGLAVMELLGEHLCMKRELREIPI 145
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_645912.1 (hypothetical protein DDB_G0269368 [Dictyostelium discoideum AX4] >Q55E69.1 RecName: Full=Protein SYS1 homolog >EAL72034.1 hypothetical protein DDB_G0269368 [Dictyostelium discoideum AX4]) HSP 1 Score: 124.0 bits (310), Expect = 3.900e-25 Identity = 58/139 (41.73%), Postives = 92/139 (66.19%), Query Frame = 0 Query: 5 AFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDVSMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144 A+DPKLI+ QI+++QCLYY++ GIL + +F + +S+ Q+F + + S G + + A L++ + GS L +VER+KKCLD + T+ F HF+ + FP T++WW L+G+ +M ++GE+LC R EL DIPL Sbjct: 7 AWDPKLIIGQILSIQCLYYILLAGILYLLDSMFSSSLSLEQMFEYQSINTHSQSGRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQLIGMVIMAMIGEYLCMRKELMDIPL 145
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_012856835.1 (PREDICTED: protein SYS1 homolog [Erythranthe guttata] >EYU21551.1 hypothetical protein MIMGU_mgv1a015601mg [Erythranthe guttata]) HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24 Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 0 Query: 2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144 G A+DP LIV QI++LQCLYYL G +L +++ GT V S+ F + +A G + ++LLS +AG+ L +VERAKKCLDF TL+ H C Y +P+++ WWV ++ GL+VM LLGE+LC R ELR+IP+ Sbjct: 4 GTAAWDPWLIVAQIVSLQCLYYLTLGVLL---SILVGTRVSKMSLVYFFDYATVTASTATGWCVMASILLSSIAGAGYLVYLVERAKKCLDFCATLYIIHLFICIAYGGWPASVTWWVVNITGLAVMALLGEYLCMRRELREIPI 145
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_015938373.1 (protein SYS1 homolog [Arachis duranensis] >XP_016174470.1 protein SYS1 homolog [Arachis ipaensis]) HSP 1 Score: 121.7 bits (304), Expect = 2.000e-24 Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 0 Query: 2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144 GA +DP LIV QI+ LQCLYY+ G +L +L+ GT V S+ F + + G + A+L+S VAG++ + ++ERAKKCLDF+ TL+ H C VY +PS++ WW+ + GL+ M LLGE+LC R ELR+IP+ Sbjct: 4 GAVVWDPWLIVAQIVCLQCLYYITLGILL---SLLVGTRVSRLSLVYFFDYATITTSTVTGWCVIAAILISSVAGAIYMLYLIERAKKCLDFSATLYIIHLFICIVYGGWPSSITWWIVNGTGLAAMALLGEYLCIRRELREIPI 145
BLAST of NO05G04490 vs. NCBI_GenBank
Match: XP_003569294.1 (protein SYS1 homolog isoform X1 [Brachypodium distachyon]) HSP 1 Score: 120.9 bits (302), Expect = 3.300e-24 Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = 0 Query: 2 GAQAFDPKLIVYQIIALQCLYYLVEGGILMGFNLIFGTDV---SMTQIFTPKGLEVGSAEGLLNVIALLLSFVAGSVLLCVVVERAKKCLDFTVTLFFFHFLACGVYESFPSTLLWWVCHLVGLSVMTLLGEHLCARSELRDIPL 144 GA +DP LIV QI+ LQCLYYL G+LM L+ GT V ++ +F L + G + + LL+ VAG+ + V+ERAKKCLDF TL+ H C +Y +P+++ WWV ++V L++M+LLGE+LC R ELRDIP+ Sbjct: 4 GAMVWDPWLIVSQIVCLQCLYYLAL-GLLMA--LLVGTRVPRLTLLYLFDFATLTPRTTTGWCAIASFLLAAVAGAAFMLYVIERAKKCLDFAATLYIIHLFICIIYGGWPASITWWVVNIVSLAIMSLLGEYLCIRRELRDIPV 145 The following BLAST results are available for this feature:
BLAST of NO05G04490 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04490 ID=NO05G04490|Name=NO05G04490|organism=Nannochloropsis oceanica|type=gene|length=1421bpback to top protein sequence of NO05G04490.1 >NO05G04490.1-protein ID=NO05G04490.1-protein|Name=NO05G04490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=152bpback to top Synonyms
Publications
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