NO05G04410, NO05G04410 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G04410
Unique Name	NO05G04410
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1926
Alignment location	chr5:1142210..1144135 +

Link to JBrowse

Properties


Property Name	Value
Description	Rhamnose biosynthetic enzyme expressed

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:1142210..1144135 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036291	NAD(P)-bd_dom_sf
IPR016040	NAD(P)-bd_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

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BLAST of NO05G04410 vs. NCBI_GenBank
Match: XP_005854661.1 (dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana CCMP526] >EKU21695.1 dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 688.0 bits (1774), Expect = 1.600e-194
Identity = 333/353 (94.33%), Postives = 343/353 (97.17%), Query Frame = 0

Query:    3 NGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSGALHEF 356
            NG AP   E +YTPKNIL+TGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH IKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFL+VEDVARAFEVILHRGVTGKIYNIGGT+EKANIEVAKDLIRLMG+ + EEKML FVEDRAFNDLRYTVNSEALKQLGW E+VSWEDGL+KTVEWYKQ+TGRYGNIDCALVAHPRSGA+HEF
Sbjct:    8 NGSAP---EAEYTPKNILVTGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYVEDVARAFEVILHRGVTGKIYNIGGTHEKANIEVAKDLIRLMGHGKEEEKMLQFVEDRAFNDLRYTVNSEALKQLGWREIVSWEDGLHKTVEWYKQHTGRYGNIDCALVAHPRSGAVHEF 357

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: EWM28017.1 (rhamnose biosynthetic enzyme expressed [Nannochloropsis gaditana])

HSP 1 Score: 688.0 bits (1774), Expect = 1.600e-194
Identity = 333/353 (94.33%), Postives = 343/353 (97.17%), Query Frame = 0

Query:    3 NGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSGALHEF 356
            NG AP   E +YTPKNIL+TGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH IKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFL+VEDVARAFEVILHRGVTGKIYNIGGT+EKANIEVAKDLIRLMG+ + EEKML FVEDRAFNDLRYTVNSEALKQLGW E+VSWEDGL+KTVEWYKQ+TGRYGNIDCALVAHPRSGA+HEF
Sbjct:   53 NGSAP---EAEYTPKNILVTGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYVEDVARAFEVILHRGVTGKIYNIGGTHEKANIEVAKDLIRLMGHGKEEEKMLQFVEDRAFNDLRYTVNSEALKQLGWREIVSWEDGLHKTVEWYKQHTGRYGNIDCALVAHPRSGAVHEF 402

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: EWM30544.1 (dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 526.9 bits (1356), Expect = 4.700e-146
Identity = 265/409 (64.79%), Postives = 306/409 (74.82%), Query Frame = 0

Query:    3 NGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLM------------------------------GYEQAEEK--------------------------------MLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYT-GRYGNIDCALVAHPR 349
            NG  P      YTPKNIL+TGGAGFI SHV +LL  ++PKYKIV LD+LDYC+ LENL ++   +N+KFVKGNICSSDLVN+VLEEEEIDTI+H AAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGI+RF+HVSTDEVYGEGAA QEPMFED VLEPTNPYAATKAGAEF+AKSY RSFNLP+IITRGNNVYGPHQYPEKLIPKF+NLL+R R +TLHGNGLNTRNFL+V DVARA++V+LH G TGKIYNIGGT+E AN+EVAKD+IR M                              G E+ +EK                                +L FVEDR FNDLRY++NSEAL++LGW E V+WEDGL +T++WY+Q    R+GNI+ ALVAHP+
Sbjct:   10 NGIMP---SCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAGNIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQ 415

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: XP_009035289.1 (hypothetical protein AURANDRAFT_23143, partial [Aureococcus anophagefferens] >EGB10498.1 hypothetical protein AURANDRAFT_23143, partial [Aureococcus anophagefferens])

HSP 1 Score: 506.9 bits (1304), Expect = 5.100e-140
Identity = 238/329 (72.34%), Postives = 278/329 (84.50%), Query Frame = 0

Query:   21 ITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGA-ADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPR 349
            +TGGAGFIASHVV+LL KK     IVN DRLDYC+C+ENL+E+    NYKFVKG+ICS+DLVN+VLE EE+DTIMHFAAQTHVDNSFGNSF FT+NNI+GTHVLLE+AKVH IKRF+HVSTDEVYGEG   + EPM ED VLEPTNPYAATKA AEF+ KSY RSF LP+IITRGNNVYGPHQ+PEKLIPKFVN L R RPVTLHG G NTRNFL+VEDVARAF+ ILH+   GKIYNIGG NE++N+ VAK+LIR+MG    E  ++ FV DRAFNDLRYT+++  L +LGW+EL+SWE+GL  TVEWY++Y+ RY +I+ ALVAHPR
Sbjct:    1 VTGGAGFIASHVVILLAKKRGPGVIVNFDRLDYCACIENLNEVAKLPNYKFVKGDICSADLVNFVLETEEVDTIMHFAAQTHVDNSFGNSFQFTRNNIMGTHVLLEAAKVHSIKRFVHVSTDEVYGEGENMETEPMIEDHVLEPTNPYAATKAAAEFLVKSYHRSFQLPIIITRGNNVYGPHQFPEKLIPKFVNQLARGRPVTLHGTGANTRNFLYVEDVARAFDCILHKAAVGKIYNIGGCNERSNLSVAKELIRIMGLSDNESSLITFVPDRAFNDLRYTIDNSELAKLGWKELMSWEEGLATTVEWYRKYSNRYKDIERALVAHPR 329

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: GAX23278.1 (dTDP-glucose 4,6-dehydratase [Fistulifera solaris])

HSP 1 Score: 502.3 bits (1292), Expect = 1.200e-138
Identity = 236/341 (69.21%), Postives = 283/341 (82.99%), Query Frame = 0

Query:   10 AETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAK-VHGIKRFIHVSTDEVYGEGA-ADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPR 349
            A  DY P+NI+ITGGAGFIASHV +LL KK+P+YKIV  D LDYC+CL NL E+    N+KFVKG+I S DLV+YVL+EE+IDTI+HFAAQTHVDNSFGNSF+FTQ NI GTHVLLESAK    IKRF+HVSTDEVYGEG   D +PM E+ VLEPTNPYAATKAGAEF+ KSY RSF +P +ITRGNNVYGPHQ+PEKLIPKF N+L+RD P+T+HG+G NTRNFL+V DVA AF+ I+H+G  G +YNIGG NE ANI+VA+ L++L G E  E++++ FV DR FNDLRYT+NS  L +LGW+EL++WE+GL  TV+WYKQY+ RYGNID ALVAHPR
Sbjct:    7 ASEDYVPQNIMITGGAGFIASHVAILLCKKYPQYKIVVYDNLDYCACLANLQELFDAPNFKFVKGDITSPDLVSYVLKEEKIDTILHFAAQTHVDNSFGNSFAFTQTNIFGTHVLLESAKCCEYIKRFVHVSTDEVYGEGEDFDTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKMPCLITRGNNVYGPHQFPEKLIPKFTNMLLRDIPLTIHGDGTNTRNFLYVTDVANAFDTIMHKGEPGHVYNIGGKNEIANIDVARALLKLFGKEDREQELITFVPDRKFNDLRYTINSNKLHELGWKELMNWEEGLKTTVDWYKQYSHRYGNIDAALVAHPR 347

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: GAX26571.1 (dTDP-glucose 4,6-dehydratase [Fistulifera solaris])

HSP 1 Score: 501.5 bits (1290), Expect = 2.100e-138
Identity = 235/341 (68.91%), Postives = 283/341 (82.99%), Query Frame = 0

Query:   10 AETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAK-VHGIKRFIHVSTDEVYGEGA-ADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPR 349
            A  DY P+NI+ITGGAGFIASHV +LL KK+P+YKIV  D LDYC+CL NL E+    N+KFVKG+I S DLV+YVL+EE+IDTI+HFAAQTHVDNSFGNSF+FTQ NI GTHVLLESAK    IKRF+HVSTDEVYGEG   D +PM E+ VLEPTNPYAATKAGAEF+ KSY RSF +P +ITRGNNVYGPHQ+PEKLIPKF N+L+RD P+T+HG+G NTRNFL+V DVA AF+ I+H+G  G +YNIGG NE AN++VA+ L++L G E  E++++ FV DR FNDLRYT+NS  L +LGW+EL++WE+GL  TV+WYKQY+ RYGNID ALVAHPR
Sbjct:    7 ASEDYVPQNIMITGGAGFIASHVAILLCKKYPQYKIVVYDNLDYCACLANLQELFDAPNFKFVKGDITSPDLVSYVLKEEKIDTILHFAAQTHVDNSFGNSFAFTQTNIFGTHVLLESAKCCEYIKRFVHVSTDEVYGEGEDFDTDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFKMPCLITRGNNVYGPHQFPEKLIPKFTNMLLRDIPLTIHGDGTNTRNFLYVTDVANAFDTIMHKGEPGHVYNIGGKNEIANLDVARALLKLFGKEDREQELITFVPDRKFNDLRYTINSNKLHELGWKELMNWEEGLKTTVDWYKQYSHRYGNIDAALVAHPR 347

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: XP_002291084.1 (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >EED91191.1 dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 501.1 bits (1289), Expect = 2.800e-138
Identity = 236/342 (69.01%), Postives = 282/342 (82.46%), Query Frame = 0

Query:   11 ETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH-GIKRFIHVSTDEVYGEGAA-DQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSG 351
            E DY PKNIL+TGGAGFI SHV +LL KK+P Y IV  D+LDYCSCL NLDE+   KN+KFVKG+I S DLV+YV+ EE+IDT+MHFAAQTHVDNSFGNSF+FTQ+NI GTHV+LE+AK H G+KRFIHVSTDEVYGEG   + E M E+ VLEPTNPYAATKAGAEF+ KSY RSF LP +ITRGNNVYGPHQ+PEKLIPKF N ++R RPVTLHG+G NTRNFL+VEDVARAFEV++H+   G IYNIGG NE +N+EVAK LI ++G     ++++ FV DR FNDLRYT+NS  L +LGW+E ++WE+GL  TVEWY +Y+ R+GNI+ ALVAHPR G
Sbjct:    8 ENDYIPKNILLTGGAGFIGSHVAILLAKKYPHYNIVVYDKLDYCSCLANLDEVSRLKNFKFVKGDITSPDLVSYVMVEEDIDTVMHFAAQTHVDNSFGNSFNFTQSNIYGTHVMLEAAKCHRGMKRFIHVSTDEVYGEGETFETEAMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFKLPCVITRGNNVYGPHQFPEKLIPKFTNQILRGRPVTLHGDGSNTRNFLYVEDVARAFEVLVHKASPGMIYNIGGDNEISNLEVAKKLIEILGKGDQMDELITFVPDRKFNDLRYTINSGKLHKLGWKEEMNWEEGLRTTVEWYTKYSDRFGNIEDALVAHPRIG 349

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: EJK47833.1 (hypothetical protein THAOC_33424 [Thalassiosira oceanica])

HSP 1 Score: 499.6 bits (1285), Expect = 8.100e-138
Identity = 239/351 (68.09%), Postives = 284/351 (80.91%), Query Frame = 0

Query:   11 ETDYTPKNILITGGA---------GFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVH-GIKRFIHVSTDEVYGEGAA-DQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSG 351
            E DY P+NIL+TGGA         GFI SH  +LL KK+P+Y ++  D+LDYCSCL NLDEI   KN+KFVKG+ICS DLV+YV+ EE++DT+MHFAAQTHVDNSFGNSF+FTQ+NI GTHVLLESAK H  I+RFIHVSTDEVYGEG   + E M E+ VLEPTNPYAATKAGAEF+ KSY RSF LP +ITRGNNVYGPHQ+PEKLIPKF N L+R R VTLHG+G NTRNFL+VEDVARAFEVILH+   G+I NIGG NE +N++VAK LI ++G +  EE++++FV DR FNDLRYT+NS  L +LGW+E +SWEDGL  TVEWY +YT R+GNI+ ALVAHPR G
Sbjct:   10 ENDYIPRNILLTGGAGPLIIAETLGFIGSHAAILLAKKYPQYNVIVYDKLDYCSCLANLDEISRLKNFKFVKGDICSPDLVSYVMREEDVDTVMHFAAQTHVDNSFGNSFNFTQSNIYGTHVLLESAKNHKTIRRFIHVSTDEVYGEGETFETEAMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFKLPCVITRGNNVYGPHQFPEKLIPKFTNQLLRGRQVTLHGDGSNTRNFLYVEDVARAFEVILHKASPGQILNIGGENEISNLDVAKTLIDILGMKDKEEELISFVPDRKFNDLRYTINSGKLHELGWKEEMSWEDGLKTTVEWYTKYTSRFGNIEDALVAHPRIG 360

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: XP_002181238.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47161.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 498.0 bits (1281), Expect = 2.400e-137
Identity = 234/349 (67.05%), Postives = 283/349 (81.09%), Query Frame = 0

Query:    2 SNGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAK-VHGIKRFIHVSTDEVYGEGA-ADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPR 349
            +NG  P     DYTP+NIL+TGGAGFIASHV +LL KK+P+YKIV  D LDYC+CL NL E+    N+KFVKG+I S DLV+YVL EE+IDTI+HFAAQTHVDNSFGNSF+FTQ NI GTHVLLESAK    ++RF+HVSTDEVYGEG   + +PM E+ VLEPTNPYAATKAGAEF+ KSY RSF LP +ITRGNNVYGPHQ+PEKLIPKF N L+++ P+T+HG+G NTRNFL+V DVA AF++I+H+G  G +YNIGG NE  N+EVA+ L++L   E+ E+ ++ FV DR FNDLRYT+NS  L +LGW EL+SWE+GL  TV+WYK+YT RYGNID ALVAHPR
Sbjct:   66 TNGTKPTAPVEDYTPENILVTGGAGFIASHVAILLCKKYPQYKIVVYDCLDYCACLANLQELFDLPNFKFVKGDIASPDLVSYVLREEKIDTILHFAAQTHVDNSFGNSFAFTQTNIYGTHVLLESAKCCDTLRRFVHVSTDEVYGEGEDFETDPMSEEHVLEPTNPYAATKAGAEFLVKSYFRSFQLPCLITRGNNVYGPHQFPEKLIPKFTNQLLKNLPLTIHGDGSNTRNFLYVTDVANAFDIIMHKGTPGHVYNIGGKNEVPNLEVARALLKLFDKEKEEDTLIKFVPDRRFNDLRYTINSNKLHELGWTELMSWEEGLATTVDWYKKYTSRYGNIDAALVAHPR 414

[Close]

BLAST of NO05G04410 vs. NCBI_GenBank
Match: OEU15776.1 (putative dTDP-glucose 4,6-dehydratase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 486.1 bits (1250), Expect = 9.300e-134
Identity = 229/341 (67.16%), Postives = 274/341 (80.35%), Query Frame = 0

Query:   10 AETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDRLDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAK-VHGIKRFIHVSTDEVYGEGA-ADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRGVTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRYTVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPR 349
            A+  Y PKNI +TGGAGFI SHV + L KK+P+Y IV  DRLDYCSCLENL E+K  KN+KF+KG+I ++DLV Y L EE IDTIMHFAAQTHVDNSFGNS +FTQ+NI GTHVLLE AK    IKRFIHVSTDEVYGEG   + +PM E+ +LEPTNPYAATKAGAEF+ KSY RSF LP +ITRGNNVYGPHQ+PEKLIPKF N LM  + +TLHG+G NTRNFL+V DVA AFE ILH+G+ G +YNIGG NE +N++VAK L+++ G E  E++ + +V DR FNDLRYT+NS  L +LGW E +SWE+GL  TV+WYK++T RYGNI+ ALVAHPR
Sbjct:    5 ADAHYVPKNIFLTGGAGFIGSHVAIKLCKKYPEYNIVVYDRLDYCSCLENLGELKGLKNFKFIKGDIATADLVTYALLEENIDTIMHFAAQTHVDNSFGNSLAFTQSNIYGTHVLLECAKNCPTIKRFIHVSTDEVYGEGEDFETDPMTEEHILEPTNPYAATKAGAEFLVKSYFRSFKLPCLITRGNNVYGPHQFPEKLIPKFTNQLMSGKKLTLHGDGTNTRNFLYVTDVAAAFETILHKGLPGHVYNIGGDNEVSNVKVAKTLLKIFGLEDKEDEYITYVPDRQFNDLRYTINSSKLHELGWTEEMSWEEGLKTTVDWYKEFTSRYGNIENALVAHPR 345

The following BLAST results are available for this feature:

BLAST of NO05G04410 vs. NCBI_GenBank

BLAST of NO05G04410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_005854661.1	1.600e-194	94.33	dTDP-glucose 4,6-dehydratase [Nannochloropsis gadi...	[more]
EWM28017.1	1.600e-194	94.33	rhamnose biosynthetic enzyme expressed [Nannochlor...	[more]
EWM30544.1	4.700e-146	64.79	dTDP-glucose 4,6-dehydratase [Nannochloropsis gadi...	[more]
XP_009035289.1	5.100e-140	72.34	hypothetical protein AURANDRAFT_23143, partial [Au...	[more]
GAX23278.1	1.200e-138	69.21	dTDP-glucose 4,6-dehydratase [Fistulifera solaris]	[more]
GAX26571.1	2.100e-138	68.91	dTDP-glucose 4,6-dehydratase [Fistulifera solaris]	[more]
XP_002291084.1	2.800e-138	69.01	dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo...	[more]
EJK47833.1	8.100e-138	68.09	hypothetical protein THAOC_33424 [Thalassiosira oc...	[more]
XP_002181238.1	2.400e-137	67.05	predicted protein [Phaeodactylum tricornutum CCAP ...	[more]
OEU15776.1	9.300e-134	67.16	putative dTDP-glucose 4,6-dehydratase [Fragilariop...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL085	nonsL085	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003414	NSK003414	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G04410.1	NO05G04410.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585090	gene_3258	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100008g94	gene2603	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G04410.1	NO05G04410.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G04410 ID=NO05G04410|Name=NO05G04410|organism=Nannochloropsis oceanica|type=gene|length=1926bp
ATGTCTAACGGTTGCGCCCCCGTCACGGCTGAGACCGATTACACGCCCAA
AAACATCCTCATCACCGGCGGCGCAGGTTTCATgtaagttccccttgaaa
ctgtgctgtccttctttatccttctcacacacacactcgcatacgatcac
cgcggcacacaccacagCGCTTCTCACGTTGTCCTTCTGCTGGTCAAGAA
GTTCCCCAAGTATAAGATTgtaagtgcctttccccctctcgccgcctccg
ccgtgctcccattttgaatgcatgtggatttctattccattcttctttcc
tctctcatcttttgtcgcaaggctatgccccaccatcgacagtgtgaaac
ctcacgcccccatgtcgtgtatatttatacattcgctttgccttcactgt
ggaagttggtggtttgaggaccagtctctccacttcccttgttccttttt
tcacttcttaccacccgcctgacaacagGTGAATCTCGATCGACTGGATT
ACTGCTCTTGCCTCGAAAACCTCGATGAGATCAAGTACTACAAAAACTAC
AAGTTCGTGAAAGGGAACATCTGCTCCTCTGACCTGGTCAACTATGTGCT
GGAGGAGGAGGAGATAGACACCATCATGCACTTCGCCGCGCAGACCCACG
TGGACAATAGCTTTGGGAACTCGTTCTCGTTCACGCAGAACAATATTCTG
GGGACGCATGTGCTGTTGGAGAGTGCGAAAGTCCATGGCATTAAACGATT
CATTCACGTGTCCACGGATGAGGTGTACGGGGAGGGAGCGGCGGACCAGG
AGCCCATGTTTGAGGATCAAGTGCTCGAGgtacggacggagggagggcgg
gcggaagggacagaaggttacatatttatttttcttcgttatctggtaga
ctggattcggtgctgtcttgtctgcttttgcgcaacgtgcgtgagatgct
catgcttttgcttcctttcgttctcttcctaccacccgctcctcctcccc
ccctccttccagCCCACCAACCCCTACGCGGCCACCAAGGCCGGCGCCGA
GTTCATCGCCAAGTCCTACTCTCGTTCTTTCAACCTGCCTCTTATCATCA
CCAGGGGAAACAACGTGTATGGGCCCCATCAGTACCCCGAGAAGCTCATC
CCCAAATTCGTTAATTTGCTCATGCGCGACCGACCCGTCACGCTTCATGG
CAATGGGCTCAACACCCGTAACTTCCTCTTTgtaagtgtgcctttctgtc
tgtttacaaccctcggcatctctttttggcttctacatcccccttgcttc
taattctccatggtcacccaccttccaatcctacctacctccctccctcc
ctccctccttccctccctccctccttcctccctcagGTGGAGGACGTGGC
CCGCGCCTTCGAAGTCATTTTACACCGGGGCGTGACGGGCAAGATCTACA
ATATTGGGGGGACGAACGAAAAGGCCAATATTGAGGTGGCTAAGGATCTA
ATCCGGCTCATGGGCTACGAGCAGGCGGAGGAGAAAATGCTCAATTTTGT
GGAGGATAGGGCTTTCAACGgtacgtaaagcgcttttcggtattcctccg
ttccttcctccctcccgatctctctctttttctttattttcccgggatgc
catggctggagttcaatatcctgactcgcaataattgcttatccaccgta
cccacccctccccacctccctccctccgttgccccgcccttcagACTTGC
GTTACACGGTCAATAGCGAGGCCTTGAAGCAACTGGGGTGGGAGGAGCTG
GTCTCGTGGGAGGACGGGCTCAACAAGACCGTGGAGTGGTACAAGCAGTA
CACGGGCAGGTACGGCAACATCGACTGTGCTTTGGTGGCGCACCCACGTT
CCGGGGCCTTGCACGAGTTCCCATAA

protein sequence of NO05G04410.1

>NO05G04410.1-protein ID=NO05G04410.1-protein|Name=NO05G04410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSNGCAPVTAETDYTPKNILITGGAGFIASHVVLLLVKKFPKYKIVNLDR
LDYCSCLENLDEIKYYKNYKFVKGNICSSDLVNYVLEEEEIDTIMHFAAQ
THVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFIHVSTDEVYGEGAA
DQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGP
HQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLFVEDVARAFEVILHRG
VTGKIYNIGGTNEKANIEVAKDLIRLMGYEQAEEKMLNFVEDRAFNDLRY
TVNSEALKQLGWEELVSWEDGLNKTVEWYKQYTGRYGNIDCALVAHPRSG
ALHEFP*

Synonyms

Publications