NO05G04290, NO05G04290 (gene) Nannochloropsis oceanica

Overview
NameNO05G04290
Unique NameNO05G04290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2658
Alignment locationchr5:1102291..1104948 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1102291..1104948 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
IPR013026TPR-contain_dom
Homology
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BLAST of NO05G04290 vs. NCBI_GenBank
Match: EWM28031.1 (hypothetical protein Naga_100008g77 [Nannochloropsis gaditana])

HSP 1 Score: 509.6 bits (1311), Expect = 1.300e-140
Identity = 273/519 (52.60%), Postives = 330/519 (63.58%), Query Frame = 0 
Query:   81 YLRRARAYEAMGKLERAQEVAMQALCLQPHNEEAFRKVQSLTRDIGLTDFGVGPSSEQLTKEGAGALVGWSKEEQPAHWYRKETVEMMEKSLPYTVLHALELAIHARVSPEAVLKKKTRLCIHLAGASSELEGFSDFGVLFDKLPHLEELQVVQIGWVGLVGPCKRFVSDPQAPPPGLLVGETRRLGHGRRLRVQRWRGLYHDFLARASKHEFDGQGYLHEAPDVVLLANPGLDFFFDCWAPTLACLRDAGYLTVLTGGNLDHSRKHHNLILQAMGVKFALHLRTSRFGIVHGQRACKNHNLCAFSGAAPLMPGRERQPSTAEECGEVRALLQRLGLEMETEGRATMRLALLNQKATARNVAQMALASSKSLTRSFCDEPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNPELEKKHNSTGKSIMYRRKDKELSLPNDSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYMKGGVTTQSPGHGWSCRSFRKGQNGIYAVENA 600
            +L+R +  +A GK E AQ  AMQA  L P   EA  KV SLTR+I LTDFGVGPS+ QLT EGAG  + W ++E P HWYRK T EMMEKSLPYT LHALELAIHA+  P  +L+KK RLCIHLAGASSELEG +DF V+F+KLPHLEEL+VVQ+GW+G+ GPCKR + DPQAPP GL+VGET+ LG G RLR++R++GLYHDFL++A +H FDGQGYLHEAPD+VL+ANP LD +FD WAPTLACLRDAGY TV+TGGNLDHSR+HHN ILQAMGV+ ALHLRTSRFGIVHG+RACKNH+LCAF G AP +P   R PS+ +E   VR LL+ +G++    G    RLALL Q+    +VAQ ALA+S+ L   +  E                                       N  +  K H+   +    + +D         E                                         VTTQSP  GWSCRSFRKGQNGIY V+++
Sbjct:   99 FLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMGVRMALHLRTSRFGIVHGRRACKNHHLCAFLGPAPFLPENLRHPSSDQEWRAVRHLLRHIGVDTGARGEMQARLALLKQQVAVISVAQTALAASRRLGLGYEGE-------------------ILPKRNGSIAGSISVENETCNAFKKVKLHDEKERPFPVKDEDS----GEGEEEAANTCPKTPVQTTPTHKEEETDVWGAAITHSCDSIKTPTRVTTQSP--GWSCRSFRKGQNGIYRVKDS 592
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BLAST of NO05G04290 vs. NCBI_GenBank
Match: XP_005853915.1 (tpr domain-containing protein [Nannochloropsis gaditana CCMP526] >EKU22442.1 tpr domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 406.0 bits (1042), Expect = 2.000e-109
Identity = 192/276 (69.57%), Postives = 225/276 (81.52%), Query Frame = 0 
Query:   81 YLRRARAYEAMGKLERAQEVAMQALCLQPHNEEAFRKVQSLTRDIGLTDFGVGPSSEQLTKEGAGALVGWSKEEQPAHWYRKETVEMMEKSLPYTVLHALELAIHARVSPEAVLKKKTRLCIHLAGASSELEGFSDFGVLFDKLPHLEELQVVQIGWVGLVGPCKRFVSDPQAPPPGLLVGETRRLGHGRRLRVQRWRGLYHDFLARASKHEFDGQGYLHEAPDVVLLANPGLDFFFDCWAPTLACLRDAGYLTVLTGGNLDHSRKHHNLILQAMG 357
            +L+R +  +A GK E AQ  AMQA  L P   EA  KV SLTR+I LTDFGVGPS+ QLT EGAG  + W ++E P HWYRK T EMMEKSLPYT LHALELAIHA+  P  +L+KK RLCIHLAGASSELEG +DF V+F+KLPHLEEL+VVQ+GW+G+ GPCKR + DPQAPP GL+VGET+ LG G RLR +R++GLYHDFL++A +H FDGQGYLHEAPD+VL+ANP LD +FD WAPTLACLRDAGY TV+TGGNLDHSR+HHN ILQAMG
Sbjct:   67 FLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRTRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMG 342
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BLAST of NO05G04290 vs. NCBI_GenBank
Match: CEM23842.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-9
Identity = 54/187 (28.88%), Postives = 88/187 (47.06%), Query Frame = 0 
Query:  159 WYRKETVEMMEK-------SLPYTVLHALELAIHARVSPEAVLKKKTRLCIHLAGASSELEGFSDFGVLFDKLPHLEELQVVQIGWVGLVGPCKRFVSDPQAPPPGLLVGETRRLGHGRRLRVQRWRGLYHDFLARASKHEFDGQGYLHEAPDVVLLANPGLDFFFDCWAPTLACLRDAGYLTVLTG 339
            W +  TV+ ++K       S P TVL+AL   +H    P      K R+ +H+ G + + E  + +  +  ++P L+EL VV +G++G      + ++     PP       + L  G+ L  + +RGLYH+F         +G G      D+ LL+NP +D   D W PTL  L     L ++TG
Sbjct:  263 WRQCHTVDALKKDRRPLLLSYPLTVLNALN-QLH---PPPVNELAKPRVVMHVVGVAGDYEAEAQWSAILTRVPSLKELIVVLVGFLGEGDRWGKELTYGMLGPP-----LPKTLESGQTLECRHFRGLYHEFTQVYGDDVAEGGGL---CADLCLLSNPSIDRSLDTWLPTLTHLLKNNKLCIVTG 437
The following BLAST results are available for this feature:
BLAST of NO05G04290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28031.11.300e-14052.60hypothetical protein Naga_100008g77 [Nannochlorops... [more]
XP_005853915.12.000e-10969.57tpr domain-containing protein [Nannochloropsis gad... [more]
CEM23842.11.100e-928.88unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003430NSK003430Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04290.1NO05G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585054gene_3243Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g77gene2588Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04290.1NO05G04290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04290 ID=NO05G04290|Name=NO05G04290|organism=Nannochloropsis oceanica|type=gene|length=2658bp
ACAGGCACGCAACAGGAATCTGCACCCGAAAGCCCAGCTTCTTCCGGTAT
GTATGTCCTAGAACACAGCCAGCTCAACCCCAGCCTCCACAAGACGGGCT
CGGCCATTCTCGACCAAGAACAAGCCGTCCAAAAAAATTCCATGGGACAG
AACGAGGGCATGGGACAGTACGAGGCCACGGATCAGCAGCACCAGgtacg
tgtgtgtaaggcgcctccggccttcaatatgcatctgttgtcatggacgg
ccctcaaacgggctggtcggagttcaaagtatgggtgtgaattgggaggg
gacatgtccaagctgtgcatttccctgcctcctccgcgtgcaagtactct
tctagacccctgactttgctttgcccgtgtatatgacctataacctaaat
ctcactcatcttttctgttacgccatctcgctcatgttttcgtccctacc
tccaccctcctccaaaagTGCACCGAATTCCCTGCCGAGCGCAATTTCGT
GAGGACCTTACGCCATGTTGCCGATGATGCGTCGCTCCTCGACCGGCACT
ATGCTCCTGCCTACCTCCGCCGCGCGAGGGCCTATGAAGCGATGGGCAAG
CTTGAACGTGCCCAAGAAGTAGCCATGCAAGCCCTGTGCCTCCAACCACA
CAATGAGGAGGCCTTCCGAAAAGTCCAATCTTTAACACGAGATATAGGTT
TAACCGATTTTGGGGTTGGCCCATCCTCGGAGCAGTTGACAAAGGAGGGA
GCGGGGGCCTTGGTGGGTTGGTCGAAGGAAGAGCAGCCCGCGCATTGGTA
CCGGAAAGAGACTGTGGAGATGATGGAGAAATCATTGCCTTACACGGTGT
TGCATGCATTGGAGCTGGCGATTCACGCGCGTGTCTCACCCGAGGCAGTG
CTGAAGAAGAAGACGAGGTTGTGTATTCATCTCGCAGGCGCCTCATCGGA
ACTGGAGGGGTTTTCGGATTTTGGCGTCCTTTTCGATAAATTGCCTCATT
TGGAGGAGTTGCAAGTGGTACAAATCGGGTGGGTGGGATTGGTGGGGCCC
TGTAAACGTTTCGTGTCTGACCCGCAAGCCCCCCCTCCGGGATTGTTGGT
GGGGGAAACGCGGCGCCTAGGGCATGGACGGCGCTTGCGGGTGCAACGAT
GGAGGGGGTTGTACCATGATTTTTTGGCGAGGGCCTCCAAGCACGAATTT
GATGGTCAGGGGTATTTGCACGAGGCTCCGGATGTGGTGTTGCTTGCGAA
TCCGGGCTTGGATTTCTTCTTTGATTGCTGGGCGCCGACATTGGCATGTT
TGCGAGATGCGGGTTATTTGACAGTGTTGACGGGCGGGAACCTCGATCAT
TCTCGTAAGCACCATAATTTAATTCTGCAGGCAATGGGTGTCAAGTTTGC
CTTACACCTACGGACGTCGAGGTTTGGGATTGTCCATGGGCAGCGGGCTT
GTAAGAACCATAATTTGTGCGCATTCTCAGGGGCGGCACCTTTGATGCCC
GGGAGGGAACGACAACCGTCCACGGCGGAGGAATGTGGGGAGGTTAGGGC
GTTGTTGCAGCGGTTGGGGTTGGAAATGGAAACGGAGGGCAGGGCGACGA
TGCGCTTAGCGCTGTTGAACCAGAAGGCGACCGCGAGGAATGTGGCGCAG
ATGGCCCTGGCGTCGTCGAAGAGTTTGACACGGAGCTTTTGTGACGAGCC
TGCCGCAGCTGCTGCCGCTGTTGCTGCTGATGGTGGTGCTGGTGCTGTTG
CTCCTATCGCTCCTGCCGCTGCCCCTGTTGCTGCCGCAGCCGCTCTTGGT
AAAGCAGGGGGAAGGAACAATCCGGAGCTGGAGAAGAAACATAACAGCAC
CGGCAAAAGCATCATGTATAGGAGGAAAGACAAGGAGCTGAGTTTGCCAA
ACGACAGTGAAGAGACTCAGGAGGCGGCGGACGAGGCAGCCAATAACCGT
CCGGACACACCGAGGCAATCGACGCCCACTGCTGCTGCTGCTGCTGTTGC
TGCTGCTGGGAATCATGAATATATGAAAGGAGGGGTGACAACACAATCTC
CGGGGCATGGGTGGTCTTGCCGGAGCTTTCGCAAGGGCCAGAACGGAATT
TATGCGGTAGAGAATGCTTGAGGGGTGAAATGATGGAAAGAGGGAATATG
GTCTGTACAATGCTGATCAGGAGAAAAACAAGGAATTGCGGAGAATATGA
GATCAATGGTGGTCAAGGTCTGGGCCTTTGTCATCTTCGTTTCGACAACA
TTTCCACAAACAAAAACAAATAGAGAAAGAGGAGTATAGTCGCATCACTC
ATTTCAGCCCTATACATTGAGAGAGTTATACAGAAGAATTCCAGCTTATT
TCAGCCCTTATCCTTCTCATTCGAGGGAGGTAAAATGTACATGCCACGGG
AGGATGTGAGAAATGGACATGCACATATGTCACTGTGACAGGACAGACGA
AACTATTACGAGCAAGAAAATAAAACGTCGAAGAAACGGATCGGTAAAAA
GGCGACTGGATCGAGAGGATTACAAACTGGGGAAGAGGAAATCAAGAATG
TGGCGTGTTGTTTATTACCGTTTGTCCCCAACAGCAGCATCGTGAGAGAA
GATTAATTATTCATGTTGAGCCATTTTCCACCACCATGGAAATAAGAAAG
TCTGTAGT
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protein sequence of NO05G04290.1

>NO05G04290.1-protein ID=NO05G04290.1-protein|Name=NO05G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MYVLEHSQLNPSLHKTGSAILDQEQAVQKNSMGQNEGMGQYEATDQQHQC
TEFPAERNFVRTLRHVADDASLLDRHYAPAYLRRARAYEAMGKLERAQEV
AMQALCLQPHNEEAFRKVQSLTRDIGLTDFGVGPSSEQLTKEGAGALVGW
SKEEQPAHWYRKETVEMMEKSLPYTVLHALELAIHARVSPEAVLKKKTRL
CIHLAGASSELEGFSDFGVLFDKLPHLEELQVVQIGWVGLVGPCKRFVSD
PQAPPPGLLVGETRRLGHGRRLRVQRWRGLYHDFLARASKHEFDGQGYLH
EAPDVVLLANPGLDFFFDCWAPTLACLRDAGYLTVLTGGNLDHSRKHHNL
ILQAMGVKFALHLRTSRFGIVHGQRACKNHNLCAFSGAAPLMPGRERQPS
TAEECGEVRALLQRLGLEMETEGRATMRLALLNQKATARNVAQMALASSK
SLTRSFCDEPAAAAAAVAADGGAGAVAPIAPAAAPVAAAAALGKAGGRNN
PELEKKHNSTGKSIMYRRKDKELSLPNDSEETQEAADEAANNRPDTPRQS
TPTAAAAAVAAAGNHEYMKGGVTTQSPGHGWSCRSFRKGQNGIYAVENA*
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Synonyms
Publications