NO05G04220, NO05G04220 (gene) Nannochloropsis oceanica

Overview
NameNO05G04220
Unique NameNO05G04220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length637
Alignment locationchr5:1088793..1089429 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1088793..1089429 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0256982TM_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO05G04220 vs. NCBI_GenBank
Match: EWM27983.1 (hypothetical protein Naga_100008g69 [Nannochloropsis gaditana])

HSP 1 Score: 145.6 bits (366), Expect = 8.600e-32
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 0 
Query:    1 MASAAKTTVSTPGSNVFLAFAIHFYAWFLGSFVLVLANAIHLFLPPWCVIPIAGWGMGLGIHAVVTYFIVDKMGGNFKMLIDQYILK 88
            MASAAK+T STPGS VFLA+AIH YAWFLGS VLVLAN IHLFLPPWCVIPIAGW +G+GIH  VTYFIVDK+ GNFK+L D YILK
Sbjct:   64 MASAAKSTTSTPGSGVFLAWAIHVYAWFLGSVVLVLANGIHLFLPPWCVIPIAGWAIGVGIHGAVTYFIVDKLNGNFKLLADTYILK 150
The following BLAST results are available for this feature:
BLAST of NO05G04220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27983.18.600e-3280.46hypothetical protein Naga_100008g69 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003435NSK003435Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04220.1NO05G04220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585019gene_3234Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g69gene2581Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04220.1NO05G04220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04220 ID=NO05G04220|Name=NO05G04220|organism=Nannochloropsis oceanica|type=gene|length=637bp
ATGGCTTCCGCCGCCAAGACAACCGTCTCTACCCCGGGCTCCAACGTCTT
CCTTGCCTTTGCCATCCACTTTTATGCCTGGTTCCTCGGCAGgtaaatca
tgaggtgcacgaattacagtggtgctcgtgtctttttccttcccccacgg
ctccgtcgacttgatggctcatatgtctctcccttctctcctgtccctcg
acacacatcaactccacagCTTTGTCCTTGTCTTGGCCAATGCCATCCAC
CTTTTTTTGCCGCCTTGGTGTGTCATTCCCATTGCTGGCTGGGGCATGGg
tacgtacaagctgggtcggggagttgggagtctattgagtctgctagttg
tttatgttcctgatatcatcagtcataaatgtctgcagttctgtcacttt
cacattcatataacaccttattctgtagcgcgatcttctttctcttttat
atgttcaatcacttatcccattctcttcctccttccatccctcccttaag
GCCTGGGCATCCACGCCGTCGTAACATACTTCATCGTGGACAAGATGGGA
GGCAACTTCAAGATGTTGATTGACCAATACATTCTGAAGCTTGTACCCAA
ACCTATCATGGATCAGGTGGAGGCCAAAATGAAGTGA
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protein sequence of NO05G04220.1

>NO05G04220.1-protein ID=NO05G04220.1-protein|Name=NO05G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MASAAKTTVSTPGSNVFLAFAIHFYAWFLGSFVLVLANAIHLFLPPWCVI
PIAGWGMGLGIHAVVTYFIVDKMGGNFKMLIDQYILKLVPKPIMDQVEAK
MK*
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Synonyms
Publications