NO05G04180, NO05G04180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G04180 vs. NCBI_GenBank
Match: EWM28010.1 (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 158.3 bits (399), Expect = 2.100e-35 Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 0 Query: 66 DRERAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 D R SKR+RAE+WER+S+KLQAG WV+G MA LHYT+FVH +L+DER+ R YFH+AMIC+GINLCIG YL VYL IKG+++EWA YCPRMIPAAT + VVCA Sbjct: 66 DGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCA 170
BLAST of NO05G04180 vs. NCBI_GenBank
Match: ETI33443.1 (hypothetical protein F443_19878 [Phytophthora parasitica P1569]) HSP 1 Score: 109.0 bits (271), Expect = 1.500e-20 Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 0 Query: 72 SKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 S+ Q+A +W S +L A +WV + + + TDF ++ D R+ RG+F +A++C GIN+CI AYL VYLP+IK + LEW++YCPRMIP AT VV AF Sbjct: 41 SRSQQAALW---STRLHAFLWVAAAGLVAYGTDFFRVIITDPRVKRGFFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAF 137
BLAST of NO05G04180 vs. NCBI_GenBank
Match: ETL27208.1 (hypothetical protein L916_19222 [Phytophthora parasitica] >ETM33668.1 hypothetical protein L914_19119 [Phytophthora parasitica] >ETO62200.1 hypothetical protein F444_19871 [Phytophthora parasitica P1976]) HSP 1 Score: 109.0 bits (271), Expect = 1.500e-20 Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 0 Query: 72 SKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 S+ Q+A +W S +L A +WV + + + TDF ++ D R+ RG+F +A++C GIN+CI AYL VYLP+IK + LEW++YCPRMIP AT VV AF Sbjct: 41 SRSQQAALW---STRLHAFLWVAAAGLVAYGTDFFRVIITDPRVKRGFFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAF 137
BLAST of NO05G04180 vs. NCBI_GenBank
Match: OWZ19395.1 (Transmembrane protein [Phytophthora megakarya]) HSP 1 Score: 108.6 bits (270), Expect = 1.900e-20 Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 0 Query: 68 ERAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 ++ S+ Q+A +W S +L A +WV + + + TDF + D R+ RG+F +A+IC G+N+CI AYL VYLP+IK + LEW++YCPRMIP AT VV AF Sbjct: 34 QQRASRSQQAALW---STRLHAFLWVAAAGLVAYGTDFFRVIFTDPRVNRGFFQVALICTGVNICITAYLAVYLPYIKRIQLEWSVYCPRMIPTATIVGVVAAF 134
BLAST of NO05G04180 vs. NCBI_GenBank
Match: ETK73775.1 (hypothetical protein L915_19328 [Phytophthora parasitica] >ETL80454.1 hypothetical protein L917_19053 [Phytophthora parasitica] >ETP03287.1 hypothetical protein F441_19737 [Phytophthora parasitica CJ01A1] >ETP31451.1 hypothetical protein F442_19689 [Phytophthora parasitica P10297]) HSP 1 Score: 108.2 bits (269), Expect = 2.500e-20 Identity = 49/100 (49.00%), Postives = 69/100 (69.00%), Query Frame = 0 Query: 72 SKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 S+ Q+A +W S +L A +WV + + + TDF ++ D R+ RG+F +A++C GIN+CI AYL VYLP+IK + LEW++YCPRMIP AT VV AF Sbjct: 41 SRSQQAALW---STRLHAFLWVAAAGLVAYGTDFFRVIITDLRVKRGFFQVALVCTGINICITAYLAVYLPYIKRIKLEWSVYCPRMIPTATIVGVVAAF 137
BLAST of NO05G04180 vs. NCBI_GenBank
Match: POM67321.1 (Transmembrane protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 107.1 bits (266), Expect = 5.700e-20 Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 0 Query: 72 SKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 S+ QRA +W S +L A +WV + + + TDF+ + D R+ RG+F +A+I GIN+CI AYL +YLP+IK + LEW++YCPRMIP AT VV AF Sbjct: 39 SRSQRAALW---STRLHAFLWVAAAGLVAYGTDFLRVIFTDPRVKRGFFQVALISTGINICITAYLAIYLPYIKRIQLEWSVYCPRMIPTATIVGVVAAF 135
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_008863251.1 (hypothetical protein H310_01787 [Aphanomyces invadans] >ETW07158.1 hypothetical protein H310_01787 [Aphanomyces invadans]) HSP 1 Score: 105.9 bits (263), Expect = 1.300e-19 Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 0 Query: 67 RERAPSK-RQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 ++RA K RAE+ +S K+ A +W+VG+ +L+Y D +H D R++R YF++ ++C GIN CI YL ++LP++K +DLEW +YCPRM+P AT VVCA Sbjct: 40 KKRAQGKPPSRAEV---ISTKIHAFLWIVGAGFLLYYLDVMHVAFRDSRVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCA 141
BLAST of NO05G04180 vs. NCBI_GenBank
Match: GAX95626.1 (transmembrane protein putative [Pythium insidiosum]) HSP 1 Score: 105.1 bits (261), Expect = 2.200e-19 Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 0 Query: 76 RAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCAF 172 RA W S K+ A +WVV + ++ + DF H + +D R+ +G+FH+ ++CVGIN CI YL +YLP+IK + LEW +YCPRMIP AT V+ AF Sbjct: 82 RAAAW---SNKMHAFLWVVAAGSVAYALDFFHVIFHDPRVRQGFFHVGLMCVGINTCITCYLAIYLPYIKRIHLEWNVYCPRMIPTATVVGVIAAF 174
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_009839016.1 (hypothetical protein H257_13250 [Aphanomyces astaci] >ETV71351.1 hypothetical protein H257_13250 [Aphanomyces astaci]) HSP 1 Score: 102.8 bits (255), Expect = 1.100e-18 Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 0 Query: 67 RERAPSK-RQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 ++RA K RAE+ +S K+ A +W+VG+ +L+Y D + D R++R YF+I ++C GIN CI YL ++LP++K +DLEW++YCPRM+P AT +VCA Sbjct: 42 KKRAQGKPPSRAEV---VSTKIHALMWIVGAGFLLYYLDVLRVAFRDARVHRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCA 143
BLAST of NO05G04180 vs. NCBI_GenBank
Match: XP_012201675.1 (hypothetical protein SPRG_06817 [Saprolegnia parasitica CBS 223.65] >KDO27550.1 hypothetical protein SPRG_06817 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 102.1 bits (253), Expect = 1.800e-18 Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 0 Query: 69 RAPSKRQRAEMWERLSMKLQAGVWVVGSMAILHYTDFVHALLNDERIYRGYFHIAMICVGINLCIGAYLVVYLPFIKGVDLEWAIYCPRMIPAATATAVVCA 171 +APSK E LS KL A +WV G+ + +Y D VH L D R++R YF+I ++C G+N CI AYL ++LP+++ VDLEW++YCPRMIP AT +V A Sbjct: 39 KAPSKA------EWLSTKLHALLWVGGACLLAYYLDVVHIALRDVRVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATIVGLVGA 134 The following BLAST results are available for this feature:
BLAST of NO05G04180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G04180 ID=NO05G04180|Name=NO05G04180|organism=Nannochloropsis oceanica|type=gene|length=5211bpback to top protein sequence of NO05G04180.2 >NO05G04180.2-protein ID=NO05G04180.2-protein|Name=NO05G04180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=173bpback to top protein sequence of NO05G04180.1 >NO05G04180.1-protein ID=NO05G04180.1-protein|Name=NO05G04180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=208bpback to top Synonyms
Publications
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