NO05G04100, NO05G04100 (gene) Nannochloropsis oceanica

Overview
NameNO05G04100
Unique NameNO05G04100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr5:1053454..1054563 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1053454..1054563 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G04100 vs. NCBI_GenBank
Match: EWM28012.1 (hypothetical protein Naga_100008g56 [Nannochloropsis gaditana])

HSP 1 Score: 202.2 bits (513), Expect = 2.800e-48
Identity = 128/302 (42.38%), Postives = 183/302 (60.60%), Query Frame = 0 
Query:    6 VIEKELLSFAIKHSPEGTLRVDALRRVVDAANLVHATEHMRYLILKDARMPGSFAELDHTSPIGSKLKGEARKLCRDLKVTSFSDVRLLNGVTEIEATVQL-NSCELHFRFKRQPQVNGTSMPRH----GIMTEGVPAWIDLNG------------EEDXXXXXXXXXXXHTAISPSFKKKPTTLVEYTISTTNITTPANPRNNRSILVQVLLCGFHPSGMPSPLGVIDPTDD-EKEGKAEDDVGQQKDICTVAMCDYTLRRAMRWCGTKLTMPDFLSFLFLFPYHEEEWDIGNLALDQLLD 290
            ++ KEL + A  H+P+G+  +D++R V+  A   +ATE +R+++L+DA++PGS  ++DHTSP GSKL GE  +L R L+VT  SDVRLLNG++ I+ATV L  +  LHF F+R+P   GTS+PR      +  +      D+ G               XXXXXXXXX   T IS     +PTT+V Y IS +N   PA P +   +L+Q  +CGFHP+G+PSP GV  P ++ +  G   +   +  D+C   M +  L  A+  CGT  ++ +F+SFL L PYHEEEWD+ NL +DQL D
Sbjct:   13 LLRKELEALATAHAPQGSEPLDSMRYVLGTALSAYATEKVRHVMLRDAKIPGSIFQMDHTSPQGSKLVGEGARLSRILQVTDLSDVRLLNGLSVIDATVLLGETLRLHFAFRREPMRQGTSLPRMRSSISMDEDNREVAPDMQGGPRXXXXXXXXXXXXXXXXXXXXXPASTTISWP-DPEPTTIVNYEISASN--GPAEPFH---VLLQATICGFHPTGLPSPAGVHAPPEEMDCLGTNSNKDLEPADVCVAEMDEDALEAAIAECGTPFSLGEFVSFLLLLPYHEEEWDVCNLVMDQLFD 308
The following BLAST results are available for this feature:
BLAST of NO05G04100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28012.12.800e-4842.38hypothetical protein Naga_100008g56 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003448NSK003448Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G04100.1NO05G04100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584964gene_3220Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g56gene2569Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G04100.1NO05G04100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G04100 ID=NO05G04100|Name=NO05G04100|organism=Nannochloropsis oceanica|type=gene|length=1110bp
ATGTTGAGTAACACTGTCATTGAGAAGGAGCTGCTATCCTTCGCCATAAA
GCACTCGCCCGAGGGGACCTTGCGTGTGGATGCCCTACGGCGTGTCGTTG
ATGCCGCCAACCTCGTCCATGCCACCGAACATATGCGGTATCTAATTTTA
AAGGACGCTCGAATGCCTGGTAGTTTTGCCGAGCTTGACCACACTAGCCC
TATTGGCAGTAAATTGAAAGGAGAGGCGCGTAAACTCTGCAGGGACCTCA
AGGTGACAAGTTTTAGTGATGTCCGGCTTTTGAATGGAGTCACTGAGATT
GAAGCCACTGTACAGTTGAATTCCTGTGAGTTGCACTTTAGATTTAAACG
GCAGCCCCAAGTCAATGGCACGTCAATGCCGCGACATGGTATAATGACAG
AAGGGGTACCGGCCTGGATTGACTTAAACGGGGAGGAGGATGGCGAGGAC
GACCAGAAAGAGGAGGAGAAAAAGCACACAGCTATCTCCCCATCGTTCAA
AAAGAAACCAACAACACTGGTTGAATACACCATCAGCACCACCAACATCA
CCACTCCAGCGAATCCACGCAATAACCGTAGCATCCTCGTTCAGGTCTTG
CTGTGTGGTTTCCACCCTTCAGGTATGCCCAGCCCTCTTGGGGTCATTGA
TCCGACCGATGACGAGAAAGAAGGGAAAGCGGAGGACGATGTAGGGCAGC
AGAAAGATATTTGCACGGTTGCAATGTGCGATTACACATTGAGACGGGCA
ATGAGGTGGTGCGGGACGAAGCTAACTATGCCTGATTTTTTGTCATTCTT
GTTCCTCTTTCCCTACCATGAGGAGGAATGGGACATTGGTAATTTGGCGC
TAGACCAGCTTTTGGACGTGGTGGAAGGAAGCGGGGATGAAAACGGAAGC
GGGGATGAAAATGGAGATGCAGAGGGGGAGGAGATCGATTGGGACTATGA
GAGCGAGAGATCAGAGGATGAGATCGATTGGGATTATGAGCAGGCTCCAT
CTCCCCCGCCAGCGTCCGCCGCCAAGAAGGAGAAGAGAAAGCGAGAACAC
GAGCAGAGCAAAAATGACAAGCAAGAAAAGGGCATCAATGAATGCAAATA
TGAAAGATAA
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protein sequence of NO05G04100.1

>NO05G04100.1-protein ID=NO05G04100.1-protein|Name=NO05G04100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MLSNTVIEKELLSFAIKHSPEGTLRVDALRRVVDAANLVHATEHMRYLIL
KDARMPGSFAELDHTSPIGSKLKGEARKLCRDLKVTSFSDVRLLNGVTEI
EATVQLNSCELHFRFKRQPQVNGTSMPRHGIMTEGVPAWIDLNGEEDGED
DQKEEEKKHTAISPSFKKKPTTLVEYTISTTNITTPANPRNNRSILVQVL
LCGFHPSGMPSPLGVIDPTDDEKEGKAEDDVGQQKDICTVAMCDYTLRRA
MRWCGTKLTMPDFLSFLFLFPYHEEEWDIGNLALDQLLDVVEGSGDENGS
GDENGDAEGEEIDWDYESERSEDEIDWDYEQAPSPPPASAAKKEKRKREH
EQSKNDKQEKGINECKYER*
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Synonyms
Publications