NO05G03860, NO05G03860 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03860 vs. NCBI_GenBank
Match: EWM27936.1 (ubiquinone biosynthesis protein mitochondrial [Nannochloropsis gaditana]) HSP 1 Score: 401.4 bits (1030), Expect = 3.100e-108 Identity = 218/324 (67.28%), Postives = 259/324 (79.94%), Query Frame = 0 Query: 43 PTKRAFATTTTA--ADVSNDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWTGTIVAVMHTALANLAAMAPASPSTCGPFQEKWDVAGKGGKEEGSQSSTDYRVPLEKDPYA 365 P RAF +TA D S ++ +TFQDPRQEILAAALPLV HGWTEE LAAGAASLGFPAVAHGMF RG IELVE+ +AQID+AW+AELEAR++ELA+ PSSRERLE+AI+ RLRLIAP+LAQWPQA+AL LSP +LETTARGLAEVADELCV + +D +++ NWYAHRATVCSVY+ATELFFLTDYS+DY+DTWAFL RRL+DVEALSHAP NVQEGVLAFQTAASAMASA++SL QPA++G L+KVP TGT+V V+H LANLAAMAP +PS PF + + K+ +++ST++ E DPYA Sbjct: 44 PVVRAFKAFSTADHFDRSKTEEESSNAASSASTSTFQDPRQEILAAALPLVPTHGWTEEALAAGAASLGFPAVAHGMFARGGIELVEHVLAQIDSAWLAELEARKEELAAFPSSRERLEKAIQCRLRLIAPHLAQWPQAMALSLSPQHLETTARGLAEVADELCVISGED-SVNVPNWYAHRATVCSVYIATELFFLTDYSDDYRDTWAFLNRRLQDVEALSHAPRNVQEGVLAFQTAASAMASALSSLTQPAVVGVLEKVPLTGTVVTVVHAVLANLAAMAPTTPS---PFDQ------EESKKRETETSTEFGPSTEIDPYA 357
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_008870924.1 (rpsU-divergently transcribed protein [Aphanomyces invadans] >ETW00789.1 rpsU-divergently transcribed protein [Aphanomyces invadans]) HSP 1 Score: 165.6 bits (418), Expect = 2.900e-37 Identity = 99/236 (41.95%), Postives = 139/236 (58.90%), Query Frame = 0 Query: 66 PPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKV 302 P A A QDP Q IL+ AL V GW+ E+L +GA G+P+VAHGMF RG IELVEY M + V + A + + +P + +RL+R IR RL L+APY++ WPQA+ALG P N TT + LAE+ D++ V D D+ +WY RA + VY ATELF L+D+S ++++TW FL+RR+ + AL P N Q+ ++ S A+LA P +Q+V Sbjct: 23 PATAAASATQQQDPSQLILSCALNHVKTQGWSIESLGSGARDAGYPSVAHGMFPRGPIELVEYFMDDLQHT-VQDKLAAESTVVDIPVT-DRLKRGIRVRLELLAPYISVWPQAMALGALPQNAPTTMKKLAEMIDDIWVFA-GDRTTDM-SWYTKRAVLTGVYTATELFMLSDHSPNHEETWKFLDRRIEEAIALGDIPNNAQDVAGMVSIGIQSLLSTAAALAGPVTQQVVQQV 254
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_009826152.1 (rpsU-divergently transcribed protein [Aphanomyces astaci] >ETV84460.1 rpsU-divergently transcribed protein [Aphanomyces astaci]) HSP 1 Score: 162.2 bits (409), Expect = 3.200e-36 Identity = 96/225 (42.67%), Postives = 133/225 (59.11%), Query Frame = 0 Query: 77 QDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKV 302 QDP IL+ A+ V GW+ ++L +GA G+P+VAHGMF RG IELVEY M + +L A E LP + +RL+R IR+RL L+APY++ WPQA+ALG P N TT + LAE+ D++ V D D+ +WY RA + VY ATELF LTD S +++DTW FL+RR+ + AL P N + ++ S A+LA P +Q+V Sbjct: 32 QDPSHIILSHAIDHVKTKGWSVDSLGSGARDAGYPSVAHGMFPRGPIELVEYFMDDLQHKVQDKLAA---ETIDLPVT-DRLKRGIRFRLELLAPYISVWPQAMALGALPQNAPTTVKKLAEMVDDIWVYA-GDRSTDV-SWYTKRAVLTGVYTATELFMLTDQSPNHEDTWRFLDRRIEEAIALGDIPNNAHDVAGMLSIGIQSLLSTAAALAGPLTTQVVQQV 250
BLAST of NO05G03860 vs. NCBI_GenBank
Match: POM59838.1 (RpsU-divergently transcribed protein [Phytophthora palmivora var. palmivora]) HSP 1 Score: 158.7 bits (400), Expect = 3.500e-35 Identity = 99/249 (39.76%), Postives = 139/249 (55.82%), Query Frame = 0 Query: 45 KRAFATTTTAADVS-NDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQP 293 ++ F T TAA V + + T + DP + IL A+ V HGWT E LAAGA LG+P+VAHGMF RGA+ELVEY M L D+L ++ + ERL+ +R RL ++ P +A WPQA+A+G P N TA+ LA+++DE+ D+ D +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P Sbjct: 34 RQCFQTAPTAAQVRLHSTQTSGASEETAKSELPVDPEKRILIKAIEHVTVHGWTIEALAAGATDLGYPSVAHGMFARGAVELVEYFMDSCLDKLRETLIVNTDKLQTM-TVAERLKFGVRARLEMLEPVMATWPQAMAIGALPQNAPNTAKRLAQISDEIWYFA-GDKSTDF-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGP 279
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_008603759.1 (hypothetical protein SDRG_00075 [Saprolegnia diclina VS20] >EQC42336.1 hypothetical protein SDRG_00075 [Saprolegnia diclina VS20]) HSP 1 Score: 158.3 bits (399), Expect = 4.600e-35 Identity = 100/241 (41.49%), Postives = 133/241 (55.19%), Query Frame = 0 Query: 69 ATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRE-----RLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT 305 A P A DP Q IL AL V GWT ETL GA GFP++AHGMF RG IELVE+ M W ++ QD LA+ P E RL+R ++ RL+L++PYL WPQA+ALG P N TT + LA+ +D++ D DL +WY RA + +Y ATELF LTD S +++DTW FL+RR+ + AL P N + ++ S A+LA P + +V T Sbjct: 24 AAPAAPVAADPSQTILTNALRHVQASGWTIETLGQGARDAGFPSIAHGMFPRGPIELVEFFMDD----WQRQV---QDALAAEPVDGEFVPTDRLKRGVQIRLQLLSPYLHVWPQAMALGALPQNAPTTMKKLAQASDDIWFFA-GDRSTDL-SWYTKRAVLTGIYTATELFMLTDTSPNHEDTWCFLDRRVEEAIALGEVPQNAGDIAGMVSIGLQSLLSTAAALAGPLSSQVVAQVAHT 255
BLAST of NO05G03860 vs. NCBI_GenBank
Match: OQR84315.1 (ubiquinone biosynthesis protein COQ9 [Achlya hypogyna]) HSP 1 Score: 158.3 bits (399), Expect = 4.600e-35 Identity = 97/236 (41.10%), Postives = 133/236 (56.36%), Query Frame = 0 Query: 71 PHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQE--GV--LAFQTAASAMASAVASLAQPAMMGALQKVP 303 P A DP Q IL A+ V GWT E L GA GFP++AHGMF RG IELV++ M A A L A + S + +RL+R ++ RL+L+APYL WPQA+ALG P N TT + LA+ AD++ D DL +WY RA + +Y ATELF LTD S +Y++TW FL+RR+ + AL P N + G+ + Q+ S A+ L+ + +Q+VP Sbjct: 25 PAAPVVVDPSQTILTNAMKHVQTSGWTIEALGQGARDAGFPSIAHGMFPRGPIELVDFFMDDWQAKMQAALAAEPIDATSEYVATDRLKRGVQIRLQLLAPYLHVWPQAMALGALPQNAPTTMKKLAQAADDIWFFA-GDRSTDL-SWYTKRALLTGIYAATELFMLTDASPNYEETWKFLDRRVEEAIALGDLPQNAGDIAGMVSIGLQSLLSTTAALAGPLSSQVVAQVVQQVP 258
BLAST of NO05G03860 vs. NCBI_GenBank
Match: XP_008901392.1 (rpsU-divergently transcribed protein [Phytophthora parasitica INRA-310] >ETK92609.1 rpsU-divergently transcribed protein [Phytophthora parasitica] >ETL46018.1 rpsU-divergently transcribed protein [Phytophthora parasitica] >ETN13349.1 rpsU-divergently transcribed protein [Phytophthora parasitica INRA-310] >ETO81407.1 rpsU-divergently transcribed protein [Phytophthora parasitica P1976] >ETP22568.1 rpsU-divergently transcribed protein [Phytophthora parasitica CJ01A1]) HSP 1 Score: 157.5 bits (397), Expect = 7.900e-35 Identity = 121/341 (35.48%), Postives = 175/341 (51.32%), Query Frame = 0 Query: 1 MRGRPALSAVVLARRCLASPQHLAAKSQTVLVPHRPGHLNTKPTKRAFATTTTAADVSNDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT---------GTIV--AVMHTALANLAAMAPASPSTCG 331 +R L+ V ++R +A ++A Q+ T P R +T TAA S +S P P DP Q ILA A+ V HGWT E LAAGA LG+P+VAHGMF RGA+ELVEY M A L ++L ++ + ERL+ +R RL ++ P LA WPQ +A+G P N +TA+ LA ++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P + P + G++V +V+ + + +PAS + G Sbjct: 12 IRRSARLATAVTSKRTVAHAASVSAIRQS---------FQTTPRIRLHSTQITAA--SEES-----PKTEPQV----DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLSQVPNPISAVGSVVPPSVVSAVASGMPFNSPASAGSAG 329
BLAST of NO05G03860 vs. NCBI_GenBank
Match: ETI52729.1 (rpsU-divergently transcribed protein [Phytophthora parasitica P1569] >ETL99172.1 rpsU-divergently transcribed protein [Phytophthora parasitica] >ETM52325.1 rpsU-divergently transcribed protein [Phytophthora parasitica]) HSP 1 Score: 156.8 bits (395), Expect = 1.300e-34 Identity = 123/340 (36.18%), Postives = 175/340 (51.47%), Query Frame = 0 Query: 7 LSAVVLARRCLASPQHLA-AKSQTVLVPHRPG------HLNTKPTKRAFATTTTAADVSNDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT------GTIVAVMHTALANLAA--MAPASPSTCGP 332 L A++ +R + HLA A + V H +T P R +T TAA S +S P P DP Q ILA A+ V HGWT E LAAGA LG+P+VAHGMF RGA+ELVEY M A L ++L ++ + ERL+ +R RL ++ P LA WPQ +A+G P N +TA+ LA ++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P + P + + +V+ ++ + A M SP++ GP Sbjct: 2 LLAIMASRSLIRRSAHLATAVTSKRTVAHAASVSAIRQSFHTTPRIRLHSTQITAA--SEES-----PKTEPQV----DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLSQVPNPISAVGSVVPPSVVSAVASGMPFNSPASAGP 327
BLAST of NO05G03860 vs. NCBI_GenBank
Match: ETP50534.1 (rpsU-divergently transcribed protein [Phytophthora parasitica P10297]) HSP 1 Score: 156.8 bits (395), Expect = 1.300e-34 Identity = 114/299 (38.13%), Postives = 160/299 (53.51%), Query Frame = 0 Query: 41 TKPTKRAFATTTTAADVSNDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT------GTIVAVMHTALANLAA--MAPASPSTCGP 332 T P R +T TAA S +S P P DP Q ILA A+ V HGWT E LAAGA LG+P+VAHGMF RGA+ELVEY M A L ++L ++ + ERL+ +R RL ++ P LA WPQ +A+G P N +TA+ LA ++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P + P + + +V+ ++ + A M SP++ GP Sbjct: 43 TTPRIRLHSTQITAA--SEES-----PKTEPQV----DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQAM-TVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLSQVPNPISAVGSVVPPSVVSAVASGMPFNSPASAGP 327
BLAST of NO05G03860 vs. NCBI_GenBank
Match: KUF78593.1 (Ubiquinone biosynthesis protein COQ9 [Phytophthora nicotianae]) HSP 1 Score: 156.4 bits (394), Expect = 1.800e-34 Identity = 121/341 (35.48%), Postives = 174/341 (51.03%), Query Frame = 0 Query: 1 MRGRPALSAVVLARRCLASPQHLAAKSQTVLVPHRPGHLNTKPTKRAFATTTTAADVSNDSXXXXPPPATPHAATFQDPRQEILAAALPLVAKHGWTEETLAAGAASLGFPAVAHGMFGRGAIELVEYAMAQIDAAWVAELEARQDELASLPSSRERLERAIRWRLRLIAPYLAQWPQALALGLSPHNLETTARGLAEVADELCVTTEKDEGMDLTNWYAHRATVCSVYVATELFFLTDYSEDYQDTWAFLERRLRDVEALSHAPTNVQEGVLAFQTAASAMASAVASLAQPAMMGALQKVPWT---------GTIV--AVMHTALANLAAMAPASPSTCG 331 +R L+ V ++R +A ++A Q+ T P R +T TAA S +S P P DP Q ILA A+ V HGWT E LAAGA LG+P+VAHGMF RGA+ELVEY M A L ++L + + ERL+ +R RL ++ P LA WPQ +A+G P N +TA+ LA ++DE+ D+ DL +WY RA + +Y +TELF L D S ++QDTWAFL+RR+ + L P N+ + ++ SAV SLA P + P + G++V +V+ + + +PAS + G Sbjct: 7 IRRSARLATAVTSKRTVAHAASVSAIRQS---------FQTTPRIRLHSTQITAA--SEES-----PKTEPQV----DPEQLILAKAMGHVVAHGWTIEALAAGATDLGYPSVAHGMFSRGAVELVEYFMDSCLAKLRETLIVNTEKLQA-XTVAERLKFGVRARLEMLEPVLATWPQGMAIGALPQNAPSTAKRLAMLSDEIWYFA-GDKSTDL-SWYTKRAILTGIYASTELFMLNDKSPNFQDTWAFLDRRVDETIQLGELPQNLNDVAGMASIGLQSVFSAVTSLAGPLAGQIISNSPLSQVPNPISAVGSVVPPSVVSAVASGMPFNSPASAGSAG 324 The following BLAST results are available for this feature:
BLAST of NO05G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03860 ID=NO05G03860|Name=NO05G03860|organism=Nannochloropsis oceanica|type=gene|length=1122bpback to top protein sequence of NO05G03860.1 >NO05G03860.1-protein ID=NO05G03860.1-protein|Name=NO05G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bpback to top Synonyms
Publications
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