NO05G03840, NO05G03840 (gene) Nannochloropsis oceanica

Overview
NameNO05G03840
Unique NameNO05G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1697
Alignment locationchr5:998227..999923 -

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Properties
Property NameValue
DescriptionUlt-like transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:998227..999923 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR035441TFIIS/LEDGF_dom_sf
IPR017923TFIIS_N
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
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BLAST of NO05G03840 vs. NCBI_GenBank
Match: EWM27959.1 (ult-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 202.6 bits (514), Expect = 3.000e-48
Identity = 172/490 (35.10%), Postives = 225/490 (45.92%), Query Frame = 0 
Query:   47 PAAASIVASTTXPAEEDSTTAPSTPMPMTQRALIDHIAQIQVAAIQAQTNQLREL------AP----------------------------IIDELEAQLLQCLDTRGRVSREKDADTLLDLMLQATRDESKVLLVEVLRSAADPGVLARLIHNGGLRVLKHWVLSYNKDVADHEILRLLLETLRDLPVTYDSLKASGLAKVINKIRKEKIKGGSSKGAGGKVEKELEALGKLSESVKTRWKLRLEKMVEES--NAPLPPPSLPIPSSLYAGVKNAKGVNRGEGKEVEIGERKGEAVDSAEAVSATVITANAVSTGAALSVKPVKTTIDAHVSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSWSDQKGAELTQIRLYEVEEKEEVARDLGVVGG--GGEEEGENRHDRIRALAMLERQKEMELF 499
            PAA+    +   P+++     PS P+P  Q  +++ IAQ Q A +Q+Q+NQLR L      AP                            IIDELEA+L+QC D RGR+SRE   D +LDLMLQAT DE+KVLL+EVL+++ D  VL RL+HNG LRVLKHWVL YN+   D  +LR LLETLRDLPVTY+SL+ SGL  +I KI+K+K+ G S       ++K   +LG+L+E V+T WK R+++    S  NAPLPP  +P  S      K                E  G  V  AE +S   I   ++S+GA  S +PV T   A  +                                                                                             V W D+KG +L  +  ++VEE+         VGG  GG+     RHDRIRALAM ERQKEMELF
Sbjct:  249 PAASPAAFTCVTPSQKIEAGTPSGPLP--QGEVMNRIAQGQAALVQSQSNQLRALVLWIATAPRLGLSESEPAYATFLHRRRPQSSRGACHIIDELEARLMQCFDARGRISRESAGDAVLDLMLQATSDENKVLLIEVLKTSTDTAVLERLVHNGVLRVLKHWVLEYNQATDDQAVLRFLLETLRDLPVTYESLRGSGLVALITKIKKDKLGGES-------LDKGRRSLGRLAEEVRTAWKKRVKEAAGASSPNAPLPPRLVPRHSVPPNAPKPGT-------------ESTGATVSDAETLSRPSI---SLSSGA--SSRPVNTDEGAGAATS------------ESAPIKRRESERKRPIVSSTCPTGRTGLEDGRGPSGPARPKPKLGPTAAASDTLASTPSSHRRADGAGGNNGDAKGHRRVVWRDEKGGDLMDVLTFDVEEE---------VGGGEGGDWSEGTRHDRIRALAMRERQKEMELF 690
The following BLAST results are available for this feature:
BLAST of NO05G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27959.13.000e-4835.10ult-like transcription factor [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03840.1NO05G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|400084gene_3193Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03840.1NO05G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03840 ID=NO05G03840|Name=NO05G03840|organism=Nannochloropsis oceanica|type=gene|length=1697bp
ATGATGGACGGGCACGACGATGACTTTAGTATGGCCCCTGCCCTTGGGGA
GGCCGCCTCATGGCCACTACCACCAGCAGCAGCTGCGATTACGGCGAATG
ATGAGGCGGATGCCGTGGATTTAGAAGTGGTAGAGACCCCTGCCGCAGCG
TCGATCGTCGCCTCTACTACTGCCCCAGCCGAGGAGGACAGCACCACCGC
TCCATCCACCCCTATGCCCATGACCCAGCGAGCCTTGATAGACCACATCG
CGCAAATACAAGTCGCTGCTATCCAGGCACAGACGAATCAGCTCCGCGAG
TTGgttcagggcatggcgacagctccttgggctacttttaattgtggcag
tggcggggggggggcacgagcgctgctgacccaccttctgccgagtttct
gtaccggcgccggcccaaggcacgtgtacaacagGCGCCCATTATCGATG
AGTTGGAGGCGCAGTTGTTGCAGTGCCTGGACACCCGTGGAAGGGTGAGT
CGAGAGAAAGATGCTGACACGCTTTTGGACCTCATGTTGCAAGCCACACG
GGACGAGAGCAAGGTTTTGTTGGTGGAAGTGCTTCGGAGCGCCGCAGACC
CCGGGGTGCTCGCTCGATTAATACACAACGGTGGGTTGCGAGTATTAAAG
CATTGGGTGTTGTCTTATAATAAAGACGTGGCAGATCACGAGATACTCCG
GTTGCTGCTCGAGACCCTGAGAGACTTGCCAGTCACCTACGACAGCTTGA
AGGCCAGTGGTCTCGCGAAAGTGATCAATAAAATTAGGAAAGAAAAAATT
AAAGGAGGCAGCAGCAAGGGAGCAGGGGGTAAGGTCGAGAAGGAACTGGA
GGCGTTGGGCAAGCTTTCCGAGTCCGTAAAGACGAGGTGGAAGCTGAGGT
TGGAAAAGATGGTTGAGGAGTCTAATGCGCCCTTGCCGCCCCCATCACTT
CCGATCCCATCGTCATTATATGCTGGCGTTAAAAATGCCAAAGGCGTCAA
CAGAGGAGAAGGTAAAGAAGTAGAAATAGGAGAAAGAAAAGGAGAAGCAG
TAGATTCAGCAGAAGCAGTATCTGCTACAGTAATAACAGCAAATGCAGTA
TCAACAGGAGCGGCACTAAGCGTCAAGCCAGTCAAGACGACGATAGATGC
TCACGTTAGCAACAAGCGAAAGTCGCCCACTACTACTACTACCACTACTA
CTACTACTACTACTACTACTACTACTACGGCTGCTACTGCTGCTGCTGGA
GCTTTAGCGGTGCCTTTAGTGGTCGAGAAGAAGCGCTCCCCGGCAAGTCT
AGAGCAGCAGCAGCACCAGAAAAAGGGCAGGACTACTCCCACTTTCACAT
TGCCAACAACGGTAGAAGCGGCAGCAGCAAAAGGAACAGCATCAGCTGGA
GGAAAAAAGAAGGACGAGGAGGAGAAGGGCAAGCGGCGGGTATCGTGGAG
TGACCAAAAAGGCGCCGAGTTGACCCAGATTCGATTGTATGAAGTAGAGG
AGAAGGAAGAGGTGGCAAGGGATTTAGGAGTGGTTGGAGGGGGAGGGGAG
GAGGAGGGGGAAAATCGCCATGATCGTATTCGGGCCTTGGCTATGCTGGA
GAGGCAGAAGGAAATGGAGCTCTTCAAGAAGGGAGGGGGGGGGGGGGGCA
AAGTGGGGAGCTCGCTCCAGGGGGATGGGGGAAAAGGGGCTTGCTAG
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protein sequence of NO05G03840.1

>NO05G03840.1-protein ID=NO05G03840.1-protein|Name=NO05G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MMDGHDDDFSMAPALGEAASWPLPPAAAAITANDEADAVDLEVVETPAAA
SIVASTTAPAEEDSTTAPSTPMPMTQRALIDHIAQIQVAAIQAQTNQLRE
LAPIIDELEAQLLQCLDTRGRVSREKDADTLLDLMLQATRDESKVLLVEV
LRSAADPGVLARLIHNGGLRVLKHWVLSYNKDVADHEILRLLLETLRDLP
VTYDSLKASGLAKVINKIRKEKIKGGSSKGAGGKVEKELEALGKLSESVK
TRWKLRLEKMVEESNAPLPPPSLPIPSSLYAGVKNAKGVNRGEGKEVEIG
ERKGEAVDSAEAVSATVITANAVSTGAALSVKPVKTTIDAHVSNKRKSPT
TTTTTTTTTTTTTTTTAATAAAGALAVPLVVEKKRSPASLEQQQHQKKGR
TTPTFTLPTTVEAAAAKGTASAGGKKKDEEEKGKRRVSWSDQKGAELTQI
RLYEVEEKEEVARDLGVVGGGGEEEGENRHDRIRALAMLERQKEMELFKK
GGGGGGKVGSSLQGDGGKGAC*
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Synonyms
Publications