NO05G03830, NO05G03830 (gene) Nannochloropsis oceanica

Overview
NameNO05G03830
Unique NameNO05G03830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length837
Alignment locationchr5:997145..997981 -

Link to JBrowse

Properties
Property NameValue
DescriptionUlt-like transcription factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:997145..997981 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
Homology
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BLAST of NO05G03830 vs. NCBI_GenBank
Match: EWM27959.1 (ult-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 139.4 bits (350), Expect = 1.700e-29
Identity = 118/293 (40.27%), Postives = 153/293 (52.22%), Query Frame = 0 
Query:    2 EGGSVREPQEDFVVITTSAFLFPVMDAGESMS-ISPISSAMGSST-------------NGSGVLSALPQWVQDRLAANGNELLQLCYYPGGG--RGLDEGRVRDITRLLMAAAGAGLEVHVQIRLCRDVSKFLPCLRLDGSLDMGLMARAFADXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXNP-----SMFEPPPLEPNYPPLSPSLPSRPLPHGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRYWKPCKYFSPNK-AGSCRFGDRCQFVHDGVSVQRRDPR 273
            EG +V  PQE F +  T AF F   +   + S  S  S A G+S+              G  +L  +P W+++RL ANGNE+L  C     G  + +D+ +V D+ RLL AA    LE HVQ RLCR+ S+FLPC+  DG LDMGL+ARAFA+XXXXXXXXXXXXXXXXXXXX                   S     PL   Y P  P   +  +PH +                                 PR+WKPCKYF+P K AGSCRFG+RC+++H+G+SV+  + R
Sbjct:  786 EGLTVHAPQEGFTISPTIAFRFSTREGDVATSNASRGSVATGNSSAENVHVPLIPDTIKGIEILKNVPGWIRERLLANGNEVLHFCLASTSGFQKEIDQQKVYDVVRLLQAAETVRLEPHVQTRLCRNPSRFLPCVSSDGGLDMGLLARAFAEXXXXXXXXXXXXXXXXXXXXNIPFHKMGGSGEETGRETGSHIRQSPLGETYSP-PPRTSAYSMPHAS-------------GLRSSPGPVPPEDPLSERHVPRFWKPCKYFAPRKGAGSCRFGNRCRYLHEGISVRHGEQR 1064
The following BLAST results are available for this feature:
BLAST of NO05G03830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27959.11.700e-2940.27ult-like transcription factor [Nannochloropsis gad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003475NSK003475Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03830.1NO05G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584881gene_3192Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g30gene2546Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03830.1NO05G03830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03830 ID=NO05G03830|Name=NO05G03830|organism=Nannochloropsis oceanica|type=gene|length=837bp
ATGGAGGGAGGGTCAGTGAGGGAACCACAGGAAGACTTCGTGGTGATCAC
CACGAGCGCGTTTTTGTTCCCAGTGATGGATGCAGGAGAGAGTATGTCGA
TATCGCCCATTTCAAGCGCGATGGGCAGCAGTACGAATGGTAGTGGCGTA
CTGAGTGCGCTTCCTCAGTGGGTTCAGGATCGTCTGGCAGCGAATGGGAA
TGAGCTGTTGCAGCTTTGTTATTACCCTGGAGGGGGAAGAGGGCTAGACG
AGGGGAGGGTACGAGACATCACACGCCTTCTAATGGCGGCTGCTGGAGCT
GGGCTGGAGGTACATGTGCAGATAAGATTGTGTAGGGATGTATCGAAGTT
TCTACCGTGTCTCCGGCTGGATGGGAGCTTGGACATGGGGTTGATGGCAC
GGGCGTTTGCGGATGAGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
TGGGGTGGCGAACCTCCTCGTTATGGTGGGAGAGGAGGAGTGGGAGGACG
AGGAGGGGTAAATCCGTCAATGTTTGAACCCCCGCCACTCGAGCCCAACT
ACCCTCCCCTTTCTCCTTCTCTTCCTTCCCGACCTCTTCCTCATGGCGCA
CCAGCACCAGGAAAGCACTATTACCAAGCCCAACACAACCATCAACAGCA
GCAGCAGAAGCAACAGCGGCAGCAGCAGAAACAGTTACAGGAACACGTGC
CTCGCTACTGGAAGCCTTGCAAATATTTCAGTCCCAACAAAGCGGGAAGT
TGTCGATTCGGTGACCGGTGCCAGTTCGTCCATGATGGCGTCAGTGTGCA
ACGCCGCGATCCACGACAACCGGGAGGAAGCGTTTGA
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protein sequence of NO05G03830.1

>NO05G03830.1-protein ID=NO05G03830.1-protein|Name=NO05G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MEGGSVREPQEDFVVITTSAFLFPVMDAGESMSISPISSAMGSSTNGSGV
LSALPQWVQDRLAANGNELLQLCYYPGGGRGLDEGRVRDITRLLMAAAGA
GLEVHVQIRLCRDVSKFLPCLRLDGSLDMGLMARAFADEEKQQQQQQQQQ
WGGEPPRYGGRGGVGGRGGVNPSMFEPPPLEPNYPPLSPSLPSRPLPHGA
PAPGKHYYQAQHNHQQQQQKQQRQQQKQLQEHVPRYWKPCKYFSPNKAGS
CRFGDRCQFVHDGVSVQRRDPRQPGGSV*
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Synonyms
Publications