NO05G03810, NO05G03810 (gene) Nannochloropsis oceanica

Overview
NameNO05G03810
Unique NameNO05G03810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1285
Alignment locationchr5:993568..994852 +

Link to JBrowse

Properties
Property NameValue
DescriptionAtp-dependent clp protease atp-binding subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:993568..994852 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0006508proteolysis
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0051082unfolded protein binding
GO:0051082unfolded protein binding
GO:0008233peptidase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR004487Clp_protease_ATP-bd_su_ClpX
Homology
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BLAST of NO05G03810 vs. NCBI_GenBank
Match: EWM28024.1 (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 8.800e-39
Identity = 135/291 (46.39%), Postives = 158/291 (54.30%), Query Frame = 0 
Query:    3 SCGRSASRLVI--LRKPTSTLVFSRAWISKNLSCDSSSSGMARPTIRSRSPTSAA----VAVQSHASEELVRPQRSCFQPHPRHDDGGYTVAAATATSAP-ASEHVSGECFRCPKCSNYLAQAADATGSTDGTFFCSSCSIWVSSTGQRACPSSPSQHHYQDSVPQYTKIPTXXXXXXXXXXXXXXXXXXXXXLFPAAKPGTPSPGSIYPPGAPDDPFMTQHSSSNSSNIVGVPAPDTNVPPRVRDSPPPTFRLLTPKQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAV 287
            SCGRSASR  I  LRK   TL  +R+W+S  L    +SS +   ++   SP+S                         + + +  D    V     TS P                 NYLA A DA+G TDGT+FCS CSIWV STGQ +C  +       DSV Q           XXXXXXXXXXXX     FPAAKPG PS          DDPFMTQH+S +++      APDT+VPP     PPPTFRLLTPKQI+QGLDEYVIGQ++VKIALAVGVHNHYKRLAV
Sbjct:    4 SCGRSASRQAIWRLRKVKLTLACNRSWLSSALPRSGNSSIIHASSVSDSSPSSEVXXXXXXXXXXXXXXXXXXXXXXHEGYQQQVDCKLIVRTPAVTSLPXXXXXXXXXXXXXXXXXNYLATAIDASGGTDGTYFCSVCSIWVLSTGQGSCEKAFYLPSPADSVLQ--------RKVXXXXXXXXXXXXPEGPFFPAAKPGLPSXXXXXXXXXXDDPFMTQHASHSNNFPPARAAPDTHVPPH-GQGPPPTFRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAV 285
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BLAST of NO05G03810 vs. NCBI_GenBank
Match: OEU20590.1 (ClpX, ATPase regulatory subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-8
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = 0 
Query:  232 DTNVPPRVRDSPPPTFRLLTPKQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAV 287
            D NV  +++  PPP  R+ TP+++ +GLDEYVIGQS+VK+AL+VGV+NHYKR++V
Sbjct:  347 DQNVADQIQ-PPPPVRRIPTPREVRRGLDEYVIGQSNVKVALSVGVYNHYKRISV 400
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BLAST of NO05G03810 vs. NCBI_GenBank
Match: XP_008619502.1 (ATP-dependent Clp protease ATP-binding subunit ClpX [Saprolegnia diclina VS20] >EQC27108.1 ATP-dependent Clp protease ATP-binding subunit ClpX [Saprolegnia diclina VS20])

HSP 1 Score: 67.8 bits (164), Expect = 8.000e-8
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 0 
Query:  234 NVPPRVRDSPPPTFRLLTPKQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAVS 288
            N   RV   P P  ++LTP++I+ GL++YVIGQ +VK ALAVGVHNHYKRL+++
Sbjct:  159 NDSQRVNTPPAPAPKVLTPREIYDGLNKYVIGQENVKKALAVGVHNHYKRLSMN 212
The following BLAST results are available for this feature:
BLAST of NO05G03810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28024.18.800e-3946.39atp-dependent clp protease atp-binding subunit [Na... [more]
OEU20590.11.600e-858.18ClpX, ATPase regulatory subunit [Fragilariopsis cy... [more]
XP_008619502.18.000e-857.41ATP-dependent Clp protease ATP-binding subunit Clp... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03810.1NO05G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|400250gene_3190Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g28gene2545Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03810.1NO05G03810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03810 ID=NO05G03810|Name=NO05G03810|organism=Nannochloropsis oceanica|type=gene|length=1285bp
CACAGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGT
CGTGGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATAT
TGCGGAAGgtacgcatgcactcatggatcaaagctggcatttcccccctc
ccgtgcttctcccacacccttcctatctcttctgtatgcctatgtgagcc
ttatcaaacaatttatttactccctcgatatacacttacagCCTACCAGC
ACCTTGGTCTTCAGTCGGGCATGGATCTCGAAAAATTTGTCCTGCGACAG
CAGCAGCAGCGGCATGGCTAGGCCGACCATCAGGAGTCGCTCCCCAACCT
CTGCTGCTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGGCCA
CAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTATAC
CGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTATCTG
GGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCCGCT
GATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTCCAT
CTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCACAGC
ACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCACCC
TCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCCCGG
CGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCAGCA
TCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGCAGC
AGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGTGCC
TCCTCGGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACACCGA
AACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGTGTC
AAAATCGCCCTGGCCGTTGGAGTCCACAACCATTATAAGCGTCTCGCTGT
CAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGCAAG
CAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGATCCC
ACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCTCCTGTG
CAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCCCCCCC
CTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAG
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protein sequence of NO05G03810.1

>NO05G03810.1-protein ID=NO05G03810.1-protein|Name=NO05G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MLSCGRSASRLVILRKPTSTLVFSRAWISKNLSCDSSSSGMARPTIRSRS
PTSAAVAVQSHASEELVRPQRSCFQPHPRHDDGGYTVAAATATSAPASEH
VSGECFRCPKCSNYLAQAADATGSTDGTFFCSSCSIWVSSTGQRACPSSP
SQHHYQDSVPQYTKIPTPPSSPSSTPPSGPPPTHPGGPLFPAAKPGTPSP
GSIYPPGAPDDPFMTQHSSSNSSNIVGVPAPDTNVPPRVRDSPPPTFRLL
TPKQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAVSRPSSTALQQQQQQ
QQAAAFSSLQQDLAGDIDPTLLATPDMHIPPPPLLCSSSSSSGISSILTS
PPPLPSVGEGPGS*
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Synonyms
Publications