NO05G03680, NO05G03680 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03680 vs. NCBI_GenBank
Match: PCI26474.1 (mechanosensitive ion channel [Thiotrichales bacterium]) HSP 1 Score: 89.4 bits (220), Expect = 3.000e-14 Identity = 44/116 (37.93%), Postives = 74/116 (63.79%), Query Frame = 0
Query: 269 DRDLSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITV 385
D ++ ++R I ++ + S LG LG++ +IAGLG++GF +GFALK+ +N+LSG+L++ +PF G IK+ ++G V+++D RY L D D IL+P +++T I V
Sbjct: 50 DEHIAVLVSRIIGVLLLLFGVISALGVLGVNVSAMIAGLGLTGFALGFALKDTISNILSGVLILLHQPFEMGDHIKIAGFEGDVVAIDLRYTELTKDGD-KILIPNAKLFTNPIIV 164
BLAST of NO05G03680 vs. NCBI_GenBank
Match: XP_004989613.1 (hypothetical protein PTSG_12875 [Salpingoeca rosetta] >EGD78290.1 hypothetical protein PTSG_12875 [Salpingoeca rosetta]) HSP 1 Score: 89.0 bits (219), Expect = 3.900e-14 Identity = 48/140 (34.29%), Postives = 84/140 (60.00%), Query Frame = 0
Query: 250 LIFIARPLETFLLRTGTIHDRDLSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVG----SYQGTVLSVDSRYVRL--LTDED-AMILVPAYQVYTQAI 383
L +A + L RT + D D+ R ++R A+ A+ + + LGT+G+DT ++AGL V G +GFA +++A+N ++G++LV +PFR+G ++ +G + G V +D RYV + L +D + +LVP V++ I
Sbjct: 88 LWLLASTFDKILARTNAVPDPDMRRLLSRTGAVAAYVGLAATALGTMGVDTSALVAGLSVGGITIGFAARDLASNYIAGLMLVTSKPFRSGDRVIIGRDSDGFMGIVTGIDLRYVHIKPLDPQDTSELLVPNSFVFSSVI 227
BLAST of NO05G03680 vs. NCBI_GenBank
Match: KNH08048.1 (hypothetical protein XU18_1378 [Perkinsela sp. CCAP 1560/4]) HSP 1 Score: 88.6 bits (218), Expect = 5.100e-14 Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 0
Query: 260 FLLRTGTIHDRDLSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVF--QRPFRTGWKIKVG----SYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITV 385
F +T I D + +++A A A++MI+ + LGT G+DT PI+ GLGV G +GFA ++I N+++G++L F R F G K+++G S +G V S D R++ LL E + VP VY+ ITV
Sbjct: 14 FFTKTNLIPDSAVRDIVSKASATAAWSMILFTALGTAGIDTSPILTGLGVGGASLGFAARDIGANLMAGLMLAFNRHRAFGHGRKLRIGSGPSSIEGVVCSWDLRHLILLNSEMERVYVPNSMVYSSIITV 144
BLAST of NO05G03680 vs. NCBI_GenBank
Match: BAU47770.1 (mechanosensitive ion channel MscS [Sulfurifustis variabilis]) HSP 1 Score: 87.8 bits (216), Expect = 8.700e-14 Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 0
Query: 269 DRDLSRFIAR------AIALVA----FTMIITSI---LGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITV 385
DR + R + R +AL++ FT+I+ + LGTLG+D I+AGLG++GF +GFAL++ +N+L+G+LL+ RPF I+V ++GTV+++D RY L A IL+P +++T ITV
Sbjct: 38 DRAIQRVVGRTRLNVLVVALLSRAAHFTLIVFGVVTALGTLGIDISAIVAGLGLTGFALGFALRDTISNLLAGVLLLVYRPFDINHHIQVSGFEGTVINIDLRYT-TLESPTARILIPNSKLFTDPITV 165
BLAST of NO05G03680 vs. NCBI_GenBank
Match: OGV39454.1 (hypothetical protein A2X48_23890 [Lentisphaerae bacterium GWF2_49_21]) HSP 1 Score: 87.8 bits (216), Expect = 8.700e-14 Identity = 50/140 (35.71%), Postives = 83/140 (59.29%), Query Frame = 0
Query: 251 IFIARPLETFLLRTGTIHDRDLSRFIARAIALVAFTMII---TSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITVLER 388
I IA+ ++T R D D + + A +++ F +I+ + LGTLG++ ++AGLG+ GF VGFALK+ +N+LSG L++ PF G I V ++G VL V+ RY +L E+ + L+P ++T I V+++
Sbjct: 27 IGIAKLVQTIFFRINRKFDADKNHVLKLAGSVIKFVIIVIGGITALGTLGVNVNALVAGLGLGGFAVGFALKDALSNLLSGALILIYHPFAIGDIISVSGFKGEVLEVNLRYT-ILQGENKVYLIPNSSLFTNTIEVIKK 165
BLAST of NO05G03680 vs. NCBI_GenBank
Match: WP_096462841.1 (mechanosensitive ion channel [Sulfurifustis variabilis]) HSP 1 Score: 87.8 bits (216), Expect = 8.700e-14 Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 0
Query: 269 DRDLSRFIAR------AIALVA----FTMIITSI---LGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITV 385
DR + R + R +AL++ FT+I+ + LGTLG+D I+AGLG++GF +GFAL++ +N+L+G+LL+ RPF I+V ++GTV+++D RY L A IL+P +++T ITV
Sbjct: 37 DRAIQRVVGRTRLNVLVVALLSRAAHFTLIVFGVVTALGTLGIDISAIVAGLGLTGFALGFALRDTISNLLAGVLLLVYRPFDINHHIQVSGFEGTVINIDLRYT-TLESPTARILIPNSKLFTDPITV 164
BLAST of NO05G03680 vs. NCBI_GenBank
Match: PCI23194.1 (mechanosensitive ion channel [Thiotrichales bacterium]) HSP 1 Score: 87.8 bits (216), Expect = 8.700e-14 Identity = 44/116 (37.93%), Postives = 73/116 (62.93%), Query Frame = 0
Query: 269 DRDLSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITV 385
D ++ +R I ++ + S LG LG++ +IAGLG++GF +GFALK+ +N+LSG+L++ +PF G IK+ ++G V+++D RY L D D IL+P +++T I V
Sbjct: 50 DEHIAVLXSRIIGVLLLLFGVISALGVLGVNVSAMIAGLGLTGFALGFALKDTISNILSGVLILLHQPFEMGDHIKIAGFEGDVVAIDLRYTELXKDGD-KILIPNAKLFTNPIIV 164
BLAST of NO05G03680 vs. NCBI_GenBank
Match: PCI23937.1 (mechanosensitive ion channel [Thiotrichales bacterium]) HSP 1 Score: 87.8 bits (216), Expect = 8.700e-14 Identity = 44/116 (37.93%), Postives = 73/116 (62.93%), Query Frame = 0
Query: 269 DRDLSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAITV 385
D ++ +R I ++ + S LG LG++ +IAGLG++GF +GFALK+ +N+LSG+L++ +PF G IK+ ++G V+++D RY L D D IL+P +++T I V
Sbjct: 50 DEHIAVLXSRIIGVLLLLFGVISALGVLGVNVSAMIAGLGLTGFALGFALKDTISNILSGVLILLHQPFEMGDHIKIAGFEGDVVAIDLRYTELXKDGD-KILIPNAKLFTNPIIV 164
BLAST of NO05G03680 vs. NCBI_GenBank
Match: OHD33867.1 (mechanosensitive ion channel protein MscS [Spirochaetes bacterium GWC2_52_13]) HSP 1 Score: 85.1 bits (209), Expect = 5.600e-13 Identity = 39/111 (35.14%), Postives = 74/111 (66.67%), Query Frame = 0
Query: 272 LSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAI 383
+++F+ + ++++ +T ++ +L +G++ PI+AGLGV+GFI+GFA +E N+L+G+++V PFR G ++VGS GTV +D V L T ++ +++ ++ QAI
Sbjct: 64 MAKFLLKIVSVIGWTFVLLIVLTQMGVNPAPILAGLGVTGFILGFAFQETIGNLLAGVMIVLNAPFRIGDYVEVGSMNGTVRDMDMMSVTLATPDNKRVIMANKLIWGQAI 174
BLAST of NO05G03680 vs. NCBI_GenBank
Match: OHD63131.1 (mechanosensitive ion channel protein MscS [Spirochaetes bacterium GWF2_52_7] >PKL21140.1 mechanosensitive ion channel family protein [Spirochaetae bacterium HGW-Spirochaetae-4]) HSP 1 Score: 85.1 bits (209), Expect = 5.600e-13 Identity = 39/111 (35.14%), Postives = 74/111 (66.67%), Query Frame = 0
Query: 272 LSRFIARAIALVAFTMIITSILGTLGLDTKPIIAGLGVSGFIVGFALKEIATNVLSGILLVFQRPFRTGWKIKVGSYQGTVLSVDSRYVRLLTDEDAMILVPAYQVYTQAI 383
+++F+ + ++++ +T ++ +L +G++ PI+AGLGV+GFI+GFA +E N+L+G+++V PFR G ++VGS GTV +D V L T ++ +++ ++ QAI
Sbjct: 64 MAKFLLKIVSVIGWTFVLLIVLTQMGVNPAPILAGLGVTGFILGFAFQETIGNLLAGVMIVLNAPFRIGDYVEVGSMNGTVRDMDMMSVTLATPDNKRVIMANKLIWGQAI 174 The following BLAST results are available for this feature:
BLAST of NO05G03680 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03680 ID=NO05G03680|Name=NO05G03680|organism=Nannochloropsis oceanica|type=gene|length=5561bpback to top protein sequence of NO05G03680.2 >NO05G03680.2-protein ID=NO05G03680.2-protein|Name=NO05G03680.2|organism=Nannochloropsis oceanica|type=polypeptide|length=423bpback to top protein sequence of NO05G03680.1 >NO05G03680.1-protein ID=NO05G03680.1-protein|Name=NO05G03680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bpback to top Synonyms
Publications
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