NO05G03650, NO05G03650 (gene) Nannochloropsis oceanica

Overview
NameNO05G03650
Unique NameNO05G03650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr5:959834..961261 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:959834..961261 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G03650 vs. NCBI_GenBank
Match: EWM27944.1 (hypothetical protein Naga_100008g7 [Nannochloropsis gaditana])

HSP 1 Score: 73.9 bits (180), Expect = 5.300e-10
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 0 
Query:   71 SLSVNRLPLQITPTTVLPISLQILAQHTFPLGRRATTVVTTLPTPAPTKPTVVVGNPVEVEGFDCLNRNARRGKKANHGKRPVSSARRKQKNRTFGRKNG 171
            S S+NRLP+   P+++    L  +    FP  R                   ++ +   VE FDCLNRNARRGKKANHGKRPVSS RRK+K RTFGRK+G
Sbjct:   89 SSSLNRLPVPNQPSSLSYGPLSAILYRLFPGPR-------------------LIPSDSWVEEFDCLNRNARRGKKANHGKRPVSSVRRKRKTRTFGRKSG 169
The following BLAST results are available for this feature:
BLAST of NO05G03650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27944.15.300e-1047.00hypothetical protein Naga_100008g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003493NSK003493Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03650.1NO05G03650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100008g7gene2527Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03650.1NO05G03650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03650 ID=NO05G03650|Name=NO05G03650|organism=Nannochloropsis oceanica|type=gene|length=1428bp
CATCAGACGTTGTTGTTCATGGCATCAGTGACGGTAATTGTGATGGTGCT
GCGAGCGGCGTTCCAGAAGGCTGCGTTGTGGTCATTCCCTCTGTCTCACG
TGTTTGCTGTAAGCTCGAGCTCTTTCCGAATTAATTTTATTTGAGTAATT
TCTTTTTGCATCTGAAAATTGACGCAACGAGACAAGCAACACCATCCATC
GTCAAAGGGTACTCACCGAATGAGAAAGAGTCCTTCATGCTGCATTGCAT
TGCGTGGTAAGGTCTCTCGGGGTCAGATGTTTGCGCTTTCCTCCAAATTT
ATCGAAACTAACAAAGAAGTACCACTGACGCTCATATCACCATCTATTTG
ACTCATTACACCATCCCATCATGGCGTCTTGATGCGTCTTGATTATCGTC
AAATCCACCATCCCCTCCAACCCAACCCCCCACATGAGCGTCGTTGGAAT
TTATTTGTTGGTATCCATAAATTTGGAGGATAAGCGCTGACATCTAATCC
CTACAGGCCTTACCACGCAATGCATGAAGTCAAGTTCCTCATTTGGTGTG
CCCCCTCGATCATCGTCGTCATACTCTTATAATCTGCCTCCCATCCGACT
GCGATCCCTATGCCCCGATCCCTACGACATCCACACAGGCCAAACCACAA
TGGCATCGGTCCTACAGGGCATGCGAAATGCCGCAGCCGCCGGAGTGAAC
GTGTGGTCGACACAAGGCAGCAAATTCATGAGgtacgtcgtgaaaggaga
ggaggggaagatgggatgggggtggaggacggcaatgcggctgtattttt
tcatttcagtttttgttgttgtgaacacctagctggctgatcgtataagt
gttcagcataagaaattttctcagaatgagtcagacaagccggtgggtac
atctgtttcccctgagagggtggccttgcggtgagcatcgcgcaacgcca
gccatccctgtgcggtagtcgcccaccattccaaagtcttagcatgctta
ctcaccccatctatccaaaaaaaaaaatcatatcatgacagTTCATTGTC
CGTAAATCGGCTCCCGCTACAAATCACCCCTACAACCGTCCTCCCCATCT
CCCTCCAAATCCTGGCGCAGCATACTTTCCCCTTGGGACGCCGAGCGACG
ACGGTTGTTACCACACTCCCAACACCAGCACCCACCAAACCGACCGTTGT
AGTGGGCAACCCTGTCGAGGTTGAAGGGTTTGACTGTTTGAACCGCAACG
CACGGCGAGGCAAGAAGGCGAATCACGGCAAGCGACCTGTGAGCTCGGCG
CGGAGAAAGCAAAAGAACAGGACGTTCGGAAGAAAGAATGGGTAAGTGGA
TGATGAAGGGAGACTAGAGGTTTGATAGACTGAAATAAAAAGGAAAGAGT
AAAAGAGAAAAACCAGAGGAGTGTCGAG
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protein sequence of NO05G03650.1

>NO05G03650.1-protein ID=NO05G03650.1-protein|Name=NO05G03650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MKSSSSFGVPPRSSSSYSYNLPPIRLRSLCPDPYDIHTGQTTMASVLQGM
RNAAAAGVNVWSTQGSKFMSSLSVNRLPLQITPTTVLPISLQILAQHTFP
LGRRATTVVTTLPTPAPTKPTVVVGNPVEVEGFDCLNRNARRGKKANHGK
RPVSSARRKQKNRTFGRKNG*
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Synonyms
Publications