NO05G03640, NO05G03640 (gene) Nannochloropsis oceanica

Overview
NameNO05G03640
Unique NameNO05G03640
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1271
Alignment locationchr5:958563..959833 -

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Properties
Property NameValue
DescriptionCentrin 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:958563..959833 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
Homology
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_005853651.1 (centrin 3 [Nannochloropsis gaditana CCMP526] >EKU22709.1 centrin 3 [Nannochloropsis gaditana CCMP526] >EWM27953.1 centrin 3 [Nannochloropsis gaditana])

HSP 1 Score: 264.2 bits (674), Expect = 2.700e-67
Identity = 132/168 (78.57%), Postives = 150/168 (89.29%), Query Frame = 0 
Query:    2 LTTSGRGGGSITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLFAGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKGSGSF 170
            + T   G   +  TK KGR+QLT EQKEEFTTSFQLFD++GK AIDLHELKVLMRALGFNI K++++ALVREIDPTNHG+VSFDTYLE+MTD+ASRRDP EEMKKAFLLFAG+K +I+VQDL+RV KQLGEKMSE+EL AMVAEFDRDGDG INEEEFLQIMKGSG+F
Sbjct:    3 MLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKDVISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_009058459.1 (hypothetical protein LOTGIDRAFT_233590 [Lottia gigantea] >ESO90803.1 hypothetical protein LOTGIDRAFT_233590 [Lottia gigantea])

HSP 1 Score: 161.4 bits (407), Expect = 2.500e-36
Identity = 82/165 (49.70%), Postives = 115/165 (69.70%), Query Frame = 0 
Query:    2 LTTSGRGGGSITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLFAGE-KGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            ++ S R   ++   K K + +L NEQK+E   +F LFD++   AID HELKV MRALGF++ K  +L ++R+ D    G ++F+ + E+MTD+   RDPQEE+ KAF LF  +  G IN+++L+RV ++LGE M++EEL AM+ EFDRDGDG INEEEFL IM G
Sbjct:    1 MSLSLRAEFALDKNKKKKKRELANEQKQEIKEAFDLFDTDKDRAIDYHELKVAMRALGFDVKKADVLKILRDYDREGSGKITFEDFNEVMTDMMLERDPQEEIVKAFKLFDDDSSGKINLRNLRRVARELGENMTDEELRAMIDEFDRDGDGEINEEEFLAIMTG 165
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: ACQ58511.1 (Centrin-3 [Anoplopoma fimbria])

HSP 1 Score: 157.5 bits (397), Expect = 3.600e-35
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 0 
Query:   15 TKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLFAGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            TK K R +LT +QK E   +F+LFD++    ID HELKV MRALGF + K  +L ++++ D   +G +SF+ + E++TD    RDP+EE+ KAF LF  E G IN+++L+RV ++LGE +S+EEL +M+ EFD DGDG IN+EEFL IM G
Sbjct:   14 TKRKKRRELTEDQKHEIKEAFELFDTDKDKEIDYHELKVAMRALGFEVKKVDVLKILKDYDREGNGKISFEDFNEVVTDRILERDPKEEIMKAFKLFDDESGKINLRNLRRVARELGENVSDEELRSMIDEFDHDGDGEINQEEFLSIMTG 164
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: KFO77696.1 (Centrin-3, partial [Cuculus canorus])

HSP 1 Score: 157.1 bits (396), Expect = 4.700e-35
Identity = 78/156 (50.00%), Postives = 113/156 (72.44%), Query Frame = 0 
Query:   11 SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLF-AGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            S+  TK K R +LT EQK+E   +F+LFD++  NAI+ HELKV MRALGF++ K  +L ++++ D    G ++F+ + E++TD    RDPQEE+ KAF LF   + G I++++L+RV ++LGE MS+EEL AM+ EFD+DGDG IN+EEF+ IM G
Sbjct:    5 SVDKTKKKKRRELTEEQKQEIKDAFELFDTDKDNAINYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILDRDPQEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTG 160
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_009561263.1 (PREDICTED: centrin-3 [Cuculus canorus])

HSP 1 Score: 157.1 bits (396), Expect = 4.700e-35
Identity = 78/156 (50.00%), Postives = 113/156 (72.44%), Query Frame = 0 
Query:   11 SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLF-AGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            S+  TK K R +LT EQK+E   +F+LFD++  NAI+ HELKV MRALGF++ K  +L ++++ D    G ++F+ + E++TD    RDPQEE+ KAF LF   + G I++++L+RV ++LGE MS+EEL AM+ EFD+DGDG IN+EEF+ IM G
Sbjct:    6 SVDKTKKKKRRELTEEQKQEIKDAFELFDTDKDNAINYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILDRDPQEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTG 161
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_020366393.1 (centrin-3 [Rhincodon typus])

HSP 1 Score: 157.1 bits (396), Expect = 4.700e-35
Identity = 79/156 (50.64%), Postives = 111/156 (71.15%), Query Frame = 0 
Query:   11 SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLF-AGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            +I  +K K R +LT EQK+E   +F LFD++   AID HELKV MRALGF++ K  +L ++R+ D    G +SF+ + E++TD    RDP+EEM KAF LF   + G IN+++L+RV ++LGE M++EEL AM+ EFD+DGDG IN+EEF+ IM G
Sbjct:   10 AIDKSKRKKRRELTEEQKQEIKEAFDLFDTDKDEAIDYHELKVAMRALGFDVKKADVLKILRDYDRNGTGKISFEDFNEVVTDWILDRDPREEMLKAFKLFDDDDSGKINLRNLRRVARELGENMTDEELRAMIDEFDKDGDGEINQEEFIAIMTG 165
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: EKC29847.1 (Centrin-3 [Crassostrea gigas])

HSP 1 Score: 156.8 bits (395), Expect = 6.100e-35
Identity = 77/156 (49.36%), Postives = 112/156 (71.79%), Query Frame = 0 
Query:   11 SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLFAGE-KGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            ++  +K K + +L +EQK+E   +F LFD++   AID HELKV MRALGF++ K  +L ++R+ D    G +SF+ + E+MTD+   RDPQEE+ KAF LF  +  G I++++L+RV ++LGE M++EEL AM+ EFDRDGDG INE+EF+ IM G
Sbjct:   22 ALDKSKKKKKRELADEQKQEIKEAFDLFDTDKDRAIDYHELKVAMRALGFDVKKADVLKILRDYDREGTGKISFEDFNEVMTDMMLERDPQEEILKAFKLFDDDTSGKISLRNLRRVARELGENMTDEELRAMIDEFDRDGDGEINEDEFIAIMTG 177
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_011439834.1 (PREDICTED: centrin-3 [Crassostrea gigas])

HSP 1 Score: 156.8 bits (395), Expect = 6.100e-35
Identity = 77/156 (49.36%), Postives = 112/156 (71.79%), Query Frame = 0 
Query:   11 SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLFAGE-KGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            ++  +K K + +L +EQK+E   +F LFD++   AID HELKV MRALGF++ K  +L ++R+ D    G +SF+ + E+MTD+   RDPQEE+ KAF LF  +  G I++++L+RV ++LGE M++EEL AM+ EFDRDGDG INE+EF+ IM G
Sbjct:   10 ALDKSKKKKKRELADEQKQEIKEAFDLFDTDKDRAIDYHELKVAMRALGFDVKKADVLKILRDYDREGTGKISFEDFNEVMTDMMLERDPQEEILKAFKLFDDDTSGKISLRNLRRVARELGENMTDEELRAMIDEFDRDGDGEINEDEFIAIMTG 165
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_010724368.2 (PREDICTED: LOW QUALITY PROTEIN: centrin-3 [Meleagris gallopavo])

HSP 1 Score: 156.8 bits (395), Expect = 6.100e-35
Identity = 82/171 (47.95%), Postives = 117/171 (68.42%), Query Frame = 0 
Query:    5 SGRGGG---------SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLF-AGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            SGRGG          S+  TK K R +LT EQK+E   +F+LFD++   AI+ HELKV MRALGF++ K  +L ++++ D    G ++F+ + E++TD    RDPQEE+ KAF LF   + G I++++L+RV ++LGE MS+EEL AM+ EFD+DGDG IN+EEF+ IM G
Sbjct:   38 SGRGGSMSLSVRNELSVDKTKKKKRRELTEEQKQEIKDAFELFDTDKDRAINYHELKVAMRALGFDVKKADVLKILKDYDREATGKITFEDFNEVVTDWILDRDPQEEILKAFKLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTG 208
[Close]
BLAST of NO05G03640 vs. NCBI_GenBank
Match: XP_009075108.1 (PREDICTED: centrin-3, partial [Acanthisitta chloris])

HSP 1 Score: 156.0 bits (393), Expect = 1.000e-34
Identity = 77/156 (49.36%), Postives = 113/156 (72.44%), Query Frame = 0 
Query:   11 SITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLF-AGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKG 166
            S+  TK K R +LT EQK+E   +F+LFD++   AI+ HELKV MRALGF++ K  +L ++++ D  + G ++F+ + E++TD    RDPQEE+ KAF LF   + G I++++L+RV ++LGE MS+EEL AM+ EFD+DGDG IN+EEF+ IM G
Sbjct:   15 SVDKTKKKKRRELTEEQKQEIKDAFELFDTDKDRAINYHELKVAMRALGFDVKKADVLKILKDYDRESTGKITFEDFNEVVTDWILDRDPQEEILKAFRLFDDDDSGKISLRNLRRVARELGENMSDEELRAMIEEFDKDGDGEINQEEFIAIMTG 170
The following BLAST results are available for this feature:
BLAST of NO05G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853651.12.700e-6778.57centrin 3 [Nannochloropsis gaditana CCMP526] >EKU2... [more]
XP_009058459.12.500e-3649.70hypothetical protein LOTGIDRAFT_233590 [Lottia gig... [more]
ACQ58511.13.600e-3550.33Centrin-3 [Anoplopoma fimbria][more]
KFO77696.14.700e-3550.00Centrin-3, partial [Cuculus canorus][more]
XP_009561263.14.700e-3550.00PREDICTED: centrin-3 [Cuculus canorus][more]
XP_020366393.14.700e-3550.64centrin-3 [Rhincodon typus][more]
EKC29847.16.100e-3549.36Centrin-3 [Crassostrea gigas][more]
XP_011439834.16.100e-3549.36PREDICTED: centrin-3 [Crassostrea gigas][more]
XP_010724368.26.100e-3547.95PREDICTED: LOW QUALITY PROTEIN: centrin-3 [Meleagr... [more]
XP_009075108.11.000e-3449.36PREDICTED: centrin-3, partial [Acanthisitta chlori... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003495NSK003495Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03640.1NO05G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584819gene_3172Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100008g6gene2526Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03640.1NO05G03640.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03640 ID=NO05G03640|Name=NO05G03640|organism=Nannochloropsis oceanica|type=gene|length=1271bp
TCTTCAGACCCCATTTTATCACAAATGTGAATTCACGAGAAAGACTTTCC
TTCCACTCTTTCACAAGGTCCACAGTCACGAATTCCCGTACGCCTGACTG
GCCGATATAACACTTAGACGATAACCTCAATCATTTAGTGCTAGTGGAAA
CGAAACCATGTTTGCTTAGCTCACGCACCGATTCACCCGTTCCTTGCTCA
AGCCCTGTCCCCCCAACCCCACATGCACGCGATCACGGTCCTGCTACACA
CCCAGGTAGCATCAACGCAGCATTTAAAACAACTTATAAGTAAGTATGCT
GACTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTAAACCAAAAG
GGCGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACGACCAGCTTC
CAATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCACGAACTCAA
Ggtattcagtagactgcattgtctcactttagtgcattacaggcgctctt
ttcttctccgcgtcctctgatcccactctccttcccccctccgacgaatc
agGTCCTTATGCGTGCCCTGGGTTTCAACATCTCCAAGCAACAAATTTTG
GCCCTCGTCCGCGAGATCGACCCAACAAACCATGGCATCGTCTCTTTCGA
CACATATCTGGAGATAATGACCGATGTTGCCTCTCGCCGTGATCCCCAAG
AAGAAATGAAGAAAGCTTTCTTGCTCTTTGCCGGCGAGAAAGGGTTGATC
AATGTGCAGGATTTGAAGAGGGTCTGTAAACAGCTGGGGGAGAAAATGTC
GGAAGAGGAGTTGGGGGCAATGGTGGCGGAGTTTGATAGgtgagtgggtg
gaatggtttgggagggtggggtgggatgaaaaagagtggaagaggtcgga
tccgtcaaaagcggaagcttgcagagaccaaaaagatttggcgagctctg
cgctttgataaacgttttcacttctcactacaatgatgcattactacagt
cgtgcgtactatctatctacgcaaccgtttctttttttctctttcatctc
atctctccactcacgcacactcctttctccccaacagAGACGGGGATGGC
TCCATCAACGAGGAAGAATTTCTTCAAATCATGAAAGGAAGCGGTTCTTT
TTGACAGCAACGCAAAAAACTCCAAAGCAGGTGAACTATAAGAATATGTG
AAAAGAAGGAGGCGACACCGGAAAGCAGAAGAGGAGAGGGAAAACAACCA
AAAAGAGACCTGTAGCATGAT
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protein sequence of NO05G03640.1

>NO05G03640.1-protein ID=NO05G03640.1-protein|Name=NO05G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLTTSGRGGGSITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHE
LKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDP
QEEMKKAFLLFAGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDG
DGSINEEEFLQIMKGSGSF*
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Synonyms
Publications