NO05G03590, NO05G03590 (gene) Nannochloropsis oceanica

Overview
NameNO05G03590
Unique NameNO05G03590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1218
Alignment locationchr5:947124..948341 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:947124..948341 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G03590 vs. NCBI_GenBank
Match: EWM28070.1 (hypothetical protein Naga_100044g2 [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 1.800e-34
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0 
Query:   92 TKTCRACLQQYKSSENGPTACHHHPGIYTGRLARIDDVDPTGAKDWFWSCCGEEREHRGCTQDYHRSFDDPPGPWRSGFQ 172
            TKTCRACL+Q+  SEN P+AC  HPGIYTGRLARIDD DP+GAKD+FWSCCG EREH GCT D+HRSFDDPPGPW+SGFQ
Sbjct:   82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ 161
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BLAST of NO05G03590 vs. NCBI_GenBank
Match: CBJ33412.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-15
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 0 
Query:   92 TKTCRACLQQYKSSENGPTACHHHPGIYTGRLARIDDVDPTGAKDWFWSCCGE-EREHRGCTQDYHRSFDDPP----GPWRS 169
            T TCR C QQ+   +N   +C +HPG+++GRL RI+DVD +G  ++FWSCCGE +  H GC +  H S+DDPP    G WRS
Sbjct:  182 TSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGL-EYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRS 262
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BLAST of NO05G03590 vs. NCBI_GenBank
Match: CEM36176.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 78.6 bits (192), Expect = 2.100e-11
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0 
Query:   94 TCRACLQQYKSSENGPTACHHHPGIYTGRLARIDDVDPTGAKDWFWSCCGE-EREHRGCTQDYHRSFD--DPPGPWRS 169
            TCR C + +    N   AC +H G+++GRL R++DVD T   ++FWSCCGE +REH GC    H SFD  D    WRS
Sbjct:  264 TCRQCKRSFVPEHNHSLACCYHAGVFSGRLNRVNDVD-TSDLEFFWSCCGEYDREHPGCVVTRHMSFDEADDATTWRS 340
The following BLAST results are available for this feature:
BLAST of NO05G03590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28070.11.800e-3480.00hypothetical protein Naga_100044g2 [Nannochloropsi... [more]
CBJ33412.11.100e-1550.00conserved unknown protein [Ectocarpus siliculosus][more]
CEM36176.12.100e-1147.44unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003502NSK003502Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03590.1NO05G03590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584799gene_3167Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g2gene2520Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03590.1NO05G03590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03590 ID=NO05G03590|Name=NO05G03590|organism=Nannochloropsis oceanica|type=gene|length=1218bp
TAGCAAAGAGGGAACGGAGATGCGTAATCTCGTCCGGTCTCTTTTGACTC
CATCACTTCTTTCTTCCCCCAACACCTAAAACCCTCCTTTCTGGCCTTAT
CATTGTCATCGCCACGCCATTTTTCCCTTCACTTTCCGTCTTCCCCTCTC
GACGGTCCCACCACCCTCATTAAACCACGCCCAGACGGCTGTCCGTCTGG
TGGAAGATTCATTTGTAGGAACGACGTTTGTAGTTATCTTAGTCCGAGCC
ACCGATGCCTTTTTTCCGAGTCCATCGTTTTTCCAGATCACCAATGAAGT
AGGCATGCAAGGGTTTACGTACAATCAAATAAATCCCCATGTAGAATCGC
TACCGCTTTGCACGTCGCTTTCGTCCACGTACGCAACCCGGACGTACCCC
CCTCGAAGAGAGCCAAACGGCAGCAAAGGACACCACTGTTTACGCACGAA
TCGAATGACCCCATTCCATCCACCCCAAGACAAAGCTCCTATTCAGATTC
AGCCCGGTTATCTAGACCAAGCTCTTACCACGCAGAAACAACCCACTAAT
AGGATCGGAGAGAGACAGCAATATGGTGAGGAGGCTATCTCCGACGCGTT
TGCCCTTCCTGTCCATGCATGTCCTGCTCCTGCTAATCTTAGCGGTGTCG
ACCGCCTCCTTCGTCCCACCGTCTTCCTCCTTCTCATCCACCTCCTTCTC
CACCTCCTCGTGCGCGTGCGACCATCATAATCGGGGAAAATTCAAAAAGA
TGAACCGCGCATCGTCCTCCTCCAACACTACGGCTGTCCTTGCCTCCTCC
TCTTCCTCCCCCTCGCACTCCTCGCCCTCCTCCTCCCGCGAAGCCACCAA
GACTTGCCGTGCTTGTCTCCAGCAGTATAAATCCAGCGAGAACGGCCCAA
CAGCATGTCATCACCACCCAGGCATCTACACGGGTCGGCTGGCCCGAATC
GACGACGTGGATCCAACAGGAGCAAAGGACTGGTTTTGGTCGTGCTGTGG
CGAGGAGAGGGAACACCGAGGATGCACACAAGATTATCATCGGAGCTTCG
ATGACCCGCCAGGGCCATGGCGCAGTGGTTTTCAATAATGAAGTGAAGGG
ACATACATCGGAAGAAACAAAATGAAGATTGGTGTATGCATGAGTGTTGC
CAGGAGCCTGCCAAGTGCATGTGTATTTTTAATGAAGTGAATTATTTGAA
ACGAAAAGTTTCGGGAAA
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protein sequence of NO05G03590.1

>NO05G03590.1-protein ID=NO05G03590.1-protein|Name=NO05G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MVRRLSPTRLPFLSMHVLLLLILAVSTASFVPPSSSFSSTSFSTSSCACD
HHNRGKFKKMNRASSSSNTTAVLASSSSSPSHSSPSSSREATKTCRACLQ
QYKSSENGPTACHHHPGIYTGRLARIDDVDPTGAKDWFWSCCGEEREHRG
CTQDYHRSFDDPPGPWRSGFQ*
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Synonyms
Publications