NO05G03580, NO05G03580 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G03580
Unique Name	NO05G03580
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2236
Alignment location	chr5:944809..947044 +

Link to JBrowse

Properties


Property Name	Value
Description	Pre-mrna-splicing factor 38b

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:944809..947044 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005037	PRP38
IPR002999	Tudor

Homology

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: EWM28045.1 (pre-mrna-splicing factor 38b [Nannochloropsis gaditana])

HSP 1 Score: 400.2 bits (1027), Expect = 1.000e-107
Identity = 189/239 (79.08%), Postives = 215/239 (89.96%), Query Frame = 0

Query:   66 MSRAALWKAEQLQAAQPNL-PPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAW 304
            MSRAALWKA+QL+A QP L  PP PE++ + ALPIHGNQTT+NVN+LLANNIM CDYFRALYPLQTYHEVIDE+Y K T+VEPWATGTSR+PSTAFCLLFKFFTMRLT++Q+TGLLTH DSPYIRAIGFLYLR+A DPK++W+W+APYLDD+EEF PSSDPNA+ T+G WLR LLS+L YY TMLPRIPVP+ERKIKMRLVL+DEKKKRA+ NRR  G FR G RVKAIYEDA+NDPAW
Sbjct:    1 MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAW 239

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: XP_002899303.1 (pre-mRNA-splicing factor 38B, putative [Phytophthora infestans T30-4] >EEY62272.1 pre-mRNA-splicing factor 38B, putative [Phytophthora infestans T30-4])

HSP 1 Score: 290.4 bits (742), Expect = 1.200e-74
Identity = 236/416 (56.73%), Postives = 293/416 (70.43%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEG--GRXXXXXXXXXXXXXXXXXXXXRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLGQNLMDAVRRREREAASARGKDYAQRPTSCKGSLSMKHDTYSHRGR 476
            S  A++R AL K+ + Q A+   P      +    LPI+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KFF MRLT +Q+ GLL H DSPYIR +GFLYLRF  DP+E+W WF PYL+D+EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +V+A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E + LGD+ + +G   R  XXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +  +L+  VR RER  A A G+DYA RP S KGSLS+K D ++ R R
Sbjct:    2 SRSALTRHALQKSLRDQNAEDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHDLYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHSDSPYIRVVGFLYLRFTCDPEELWTWFEPYLEDSEEFNASANPSLKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIVDRLKPGAKVRAMYADEENEPAMYDAVIDSV---------EEGDQFWVSFPAYGNTEKVSLGDIEVDKGKQRRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGDLLQQVRERERRKAEAVGRDYASRPASYKGSLSLKLDRWTTRKR 408

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: XP_009539955.1 (hypothetical protein PHYSODRAFT_551733 [Phytophthora sojae] >EGZ04580.1 hypothetical protein PHYSODRAFT_551733 [Phytophthora sojae])

HSP 1 Score: 284.6 bits (727), Expect = 6.400e-73
Identity = 182/414 (43.96%), Postives = 237/414 (57.25%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEGGRXXXXXXXXXXXXXXXXXXXXRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLGQNLMDAVRRREREAASARGKDYAQRPTSCKGSLSMKHDTYSHRGR 476
            S  A++R AL K+ + Q+AQ   P      +    LPI+GN +T+N+N+LL  NI+   YF  LY L+TYHEV+DEIY +    EPW+ GT+R+PS+ FCLL KFF MRLT +Q+ GLL H DSPYIR +GFLYLRF  DP+E+W WF PYL+D EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +++A+Y D +N+PA Y A I +V         E+G +F V+F  YGN E + LGD+   +G +                                                        XXXXXXXXXXXXXXXXXXXX         VR RER  A A G+DYA RP S KGSLS+K D ++ R R
Sbjct:    2 SRSALTRHALQKSLRGQSAQDQPPEETQRRVKQDELPIYGNDSTYNLNTLLHQNILQSAYFHELYKLRTYHEVVDEIYYRVDLAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPYLEDPEEFNASANPSLKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIVDRLKPGTKIRAMYADEENEPAMYDAVIDKV---------EEGNQFWVSFPAYGNTEKVSLGDIEFDKGKQ-------------------------------------------------------HXXXXXXXXXXXXXXXXXXXXXXXXXXXQQVRERERRKAEAVGRDYASRPVSYKGSLSLKLDRWTTRKR 351

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: XP_008903927.1 (hypothetical protein PPTG_09890 [Phytophthora parasitica INRA-310] >ETN10821.1 hypothetical protein PPTG_09890 [Phytophthora parasitica INRA-310])

HSP 1 Score: 284.6 bits (727), Expect = 6.400e-73
Identity = 140/288 (48.61%), Postives = 188/288 (65.28%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEG 350
            S  A++R AL K+ + Q AQ   P      +    LPI+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KFF MRLT +Q+ GLL H DSPYIRA+GFLYLRF  DP+E+W WF P+L+D EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +V+A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E + LGD+   +G
Sbjct:    2 SRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPAMYDAVIDSV---------EEGNQFWVSFPAYGNSEKVSLGDIEFDKG 280

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: ETP46354.1 (hypothetical protein F442_07391 [Phytophthora parasitica P10297])

HSP 1 Score: 284.6 bits (727), Expect = 6.400e-73
Identity = 140/288 (48.61%), Postives = 188/288 (65.28%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEG 350
            S  A++R AL K+ + Q AQ   P      +    LPI+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KFF MRLT +Q+ GLL H DSPYIRA+GFLYLRF  DP+E+W WF P+L+D EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +V+A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E + LGD+   +G
Sbjct:    2 SRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPAMYDAVIDSV---------EEGNQFWVSFPAYGNSEKVSLGDIEFDKG 280

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: OWZ08535.1 (Pre-mRNA-splicing factor 38B [Phytophthora megakarya])

HSP 1 Score: 284.6 bits (727), Expect = 6.400e-73
Identity = 178/414 (43.00%), Postives = 237/414 (57.25%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEGGRXXXXXXXXXXXXXXXXXXXXRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLGQNLMDAVRRREREAASARGKDYAQRPTSCKGSLSMKHDTYSHRGR 476
            S  A++R AL K+ + Q+ Q N P      +    L I+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KFF MRLT +Q+ GLL H DSP+IR +GFLYLRF  DP+E+W WF PYL D EEF  S++P+   TIG+WL  LL    Y+ T+LPRIP  IE  IK++L+L + KK+RA  N     + + G++++A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E +GLGD+   +G +  XXXXXXXXXXXXXXXXX                                                         + G +L+  VR RER  A A G+DYA RP S KGSLS+K D ++ R R
Sbjct:    2 SRSALTRHALQKSLRGQSEQDNPPEETQRRVKQDELAIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHKDSPFIRVVGFLYLRFTCDPEELWTWFEPYLADPEEFNASANPSLKTTIGEWLVSLLEANNYFGTILPRIPKKIEDLIKVKLLLFNHKKERAKENLAIVDRLKPGIKIRAMYADEENEPAMYDAVIDSV---------EEGNQFWVSFPAYGNTEKVGLGDIEFDKGNQRRXXXXXXXXXXXXXXXXXGN------------------------------------------------------DITG-DLLQQVRERERRKAEAVGRDYASRPASYKGSLSLKLDRWTTRKR 351

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: XP_009829336.1 (hypothetical protein H257_05987 [Aphanomyces astaci] >ETV81478.1 hypothetical protein H257_05987 [Aphanomyces astaci])

HSP 1 Score: 283.9 bits (725), Expect = 1.100e-72
Identity = 230/384 (59.90%), Postives = 276/384 (71.88%), Query Frame = 0

Query:   92 ISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEGGRXXXXXXXXXXXXXXXXXXXXRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLGQNLMDAVRRREREAASARGKDYAQRPTSCKGSLSMKHDTYSHRGR 476
            +    LPIHGNQTT+N N+LL +N+M+ DYFR LY L TYHEV+DEIY +  + EPWA GTSR+PST FCLL KF TMRLT  Q+ GLL H DSP+IR +GFLYLR+  DP+ +WEW+ P+LDD EEF  SS+   + T+G W+R LL +L Y+NT+LPRIP  I+  IK++L+L  +KK+R +AN        +G +VKA+Y D D+ PA Y A I EV +   E        + VTF  YGN E + LGD+   +   XXXXXXXXXXXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    L  +LM  VR +ER  A A GKDYA RP S KGSLS+K D ++ R R
Sbjct:   52 VKENQLPIHGNQTTYNFNTLLYDNVMNSDYFRKLYELATYHEVVDEIYYRVDHAEPWAAGTSRIPSTCFCLLMKFCTMRLTVNQMQGLLKHVDSPFIRCVGFLYLRYTCDPELLWEWYEPFLDDEEEFNASSNDAILTTMGAWIRSLLEDLNYFNTILPRIPKKIQDGIKVKLLLHGQKKQRQAANLAIVEYLVKGTKVKAMYTDEDHPPAMYDAVIDEVDDVTHE--------YWVTFPEYGNTEKVSLGDIAFEKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGALTDDLMAQVREQERRKAEAVGKDYAARPASYKGSLSLKQDRFTTRKR 427

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: ETK88574.1 (hypothetical protein L915_07193 [Phytophthora parasitica] >ETL41971.1 hypothetical protein L916_07141 [Phytophthora parasitica] >ETP18446.1 hypothetical protein F441_07333 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 283.1 bits (723), Expect = 1.900e-72
Identity = 139/288 (48.26%), Postives = 187/288 (64.93%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEG 350
            S  A++R AL K+ + Q AQ   P      +    LPI+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KFF MRLT +Q+ GLL H DSPYIR +GFLYLRF  DP+E+W WF P+L+D EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +V+A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E + LGD+   +G
Sbjct:    2 SRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFFLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPAMYDAVIDSV---------EEGNQFWVSFPAYGNSEKVSLGDIEFDKG 280

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: ETL95126.1 (hypothetical protein L917_07030 [Phytophthora parasitica])

HSP 1 Score: 282.3 bits (721), Expect = 3.200e-72
Identity = 139/288 (48.26%), Postives = 187/288 (64.93%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEG 350
            S  A++R AL K+ + Q AQ   P      +    LPI+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KF  MRLT +Q+ GLL H DSPYIRA+GFLYLRF  DP+E+W WF P+L+D EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +V+A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E + LGD+   +G
Sbjct:    2 SRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFLLMRLTRKQMQGLLRHTDSPYIRAVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPAMYDAVIDSV---------EEGNQFWVSFPAYGNSEKVSLGDIEFDKG 280

[Close]

BLAST of NO05G03580 vs. NCBI_GenBank
Match: ETI48675.1 (hypothetical protein F443_07333 [Phytophthora parasitica P1569])

HSP 1 Score: 280.8 bits (717), Expect = 9.200e-72
Identity = 138/288 (47.92%), Postives = 186/288 (64.58%), Query Frame = 0

Query:   62 SAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEG 350
            S  A++R AL K+ + Q AQ   P      +    LPI+GN TT+N+N+LL  NI+   YF  LY  +TYHEV+DEIY +  + EPW+ GT+R+PS+ FCLL KF  MRLT +Q+ GLL H DSPYIR +GFLYLRF  DP+E+W WF P+L+D EEF  S++P+   TIG+WL  LL E  Y+ T+LPRIP  IE  IK++L+LL  KK+RA  N     + + G +V+A+Y D +N+PA Y A I  V         E+G +F V+F  YGN E + LGD+   +G
Sbjct:    2 SRSALTRHALQKSLRGQTAQDQPPEETQRRVKQDELPIYGNDTTYNLNTLLHQNILQSAYFHELYKFRTYHEVVDEIYYRVDHAEPWSPGTARIPSSCFCLLHKFLLMRLTRKQMQGLLRHTDSPYIRVVGFLYLRFTCDPEELWTWFEPFLEDPEEFNASANPSVKTTIGEWLISLLEENNYFGTILPRIPKKIEDGIKVKLLLLSRKKERAKENLAIIDQLKRGTKVRAMYADEENEPAMYDAVIDSV---------EEGNQFWVSFPAYGNSEKVSLGDIEFDKG 280

The following BLAST results are available for this feature:

BLAST of NO05G03580 vs. NCBI_GenBank

BLAST of NO05G03580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28045.1	1.000e-107	79.08	pre-mrna-splicing factor 38b [Nannochloropsis gadi...	[more]
XP_002899303.1	1.200e-74	56.73	pre-mRNA-splicing factor 38B, putative [Phytophtho...	[more]
XP_009539955.1	6.400e-73	43.96	hypothetical protein PHYSODRAFT_551733 [Phytophtho...	[more]
XP_008903927.1	6.400e-73	48.61	hypothetical protein PPTG_09890 [Phytophthora para...	[more]
ETP46354.1	6.400e-73	48.61	hypothetical protein F442_07391 [Phytophthora para...	[more]
OWZ08535.1	6.400e-73	43.00	Pre-mRNA-splicing factor 38B [Phytophthora megakar...	[more]
XP_009829336.1	1.100e-72	59.90	hypothetical protein H257_05987 [Aphanomyces astac...	[more]
ETK88574.1	1.900e-72	48.26	hypothetical protein L915_07193 [Phytophthora para...	[more]
ETL95126.1	3.200e-72	48.26	hypothetical protein L917_07030 [Phytophthora para...	[more]
ETI48675.1	9.200e-72	47.92	hypothetical protein F443_07333 [Phytophthora para...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL085	nonsL085	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR092	ncniR092	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR120	ngnoR120	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR117	ngnoR117	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK003503	NSK003503	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO05G03580.1	NO05G03580.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526481	gene_3166	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100044g3	gene2519	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO05G03580.1	NO05G03580.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO05G03580 ID=NO05G03580|Name=NO05G03580|organism=Nannochloropsis oceanica|type=gene|length=2236bp
ATGGTATGTGCCCTGGTCTTGAGGCTTGCTGCCGAGGACGAGCTCCTCCA
TCCCTTCTGCCGCCCACAACGCAAATCTCATGCCCTCACgtacctcttca
gctagcccagtcaattgctgaaatctttgtccttgtatatctgtgcttgg
gagggggatggtggtgagagtgggagggcgtccgaagtcagaggaacaag
cggcgataaggaggaagccaggagcaagatgccccctttcgtgactgaag
ccccacatacacttacaaccctacattgacgtcgtacagGACATTTACGT
CGTACAGGGCCGTCTGGCAGCATATCCGGTGTCTCTGCCTGCTGCAGCAC
ATTTTGGAGCCTTGCTTTACGGTCACCATCAACAGgtaagcaccggccgg
cctttcacgatacttccgatgcccttctggctccttgctcctgctctgcc
ctccgtcggagcctcggccactgcacgacggctgcacttctccttcctac
aactctagatagtggacacgccgtgtctcataaattttcttctccctgtg
ctaacctcaaggtttggtctcgttgccctcaacctctccacccactctcc
attcctctgcacagCGCCGAAGCGATGTCGCGGGCCGCATTATGGAAGGC
CGAGCAGCTCCAGGCCGCCCAACCCAACCTGCCGCCACCTCTCCCTGAGT
CTATTTCAGCCAAAGCTTTGCCTATTCACGGCAACCAGACCACGTTTAAT
GTCAACAGTTTGCTCGCAAACAACATCATGAGCTGCGACTACTTCCGGGC
ACTGTACCCCTTGCAGACGTACCATGAGGTGATTGATGAGATTTATCTGA
AGTGTACGAATGTGGAGCCATGGGCGACGGGCACCTCCCGCGTGCCCTCT
ACGGCATTTTGTCTTTTGTTCAAgtaagtccgccgagggagtggaaaagc
gagagtggggtagaaaaacatggttcagtctagtcttctagtttcctgaa
aagtgcatttggcattcaatgacaccctcgctcctttctactttcccttc
ctccctcgccagGTTCTTCACCATGCGCCTCACCGAAAGACAAATCACCG
GCCTGCTCACCCACGGAGACTCCCCCTACATCCGAGCAATCGGCTTCCTC
TACCTTCGCTTCGCCCTGGACCCCAAAGAAATGTGGGAATGGTTTGCCCC
TTATCTTGATGACACTGAGGAATTCACCCCCTCCTCGGACCCGAACGCTG
TGATGACTATTGGGCAATGGTTGAGGAAGTTGCTATCGGAGTTACAGTAC
TATAACACGATGCTCCCCAGGATCCCTGTGCCTATTGAACGGAAAATCAA
AATGCGGTTGGTCCTGTTGGACGAGAAGAAAAAAAGGGCCTCAGCAAACA
GACGACACGAGGGAAAGTTCAGGGAAGGAGTGAGAGTGAAGGCCATATAC
GAAGATGCTGACAATGATCCTGCGTGGTACACGGCGGCGATTAGTGAGGT
CTTGGAGGGGGAGGAGGAGGGCGGGAGGGAAGATGGACCCAGATTTCTAG
TAACGTTTGATGGGTATGGGAACCAGGAGGTGTTGGGGTTGGGGGATATG
ATGTTAATGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAAGAAGCCG
GAGTCGCAGCAGGAGCAGGAGTGTGAGCAATCGATGGAAGAAGAAGGAGA
GAGGCAGGAGTGGAAGCCGGAGCAGGAGCAGGAGCAGGTCGCGAGCGGAC
CGAGGAGGAGGACGACGCCGGCGTGATGGCGATGAGAGCGAATATGAAGG
CGGAGATGGTAATGGAGGACGGGGGGGAGGAAGAGGGGAAGGTGAGAGTT
TACTCGGGCAGAATCTGATGGACGCCGTTCGGAGGAGGGAGAGGGAAGCC
GCCTCGGCACGGGGTAAGGATTACGCACAGCGGCCCACTTCTTGCAAGGG
ATCATTGTCAATGAAGCATGACACCTACTCCCATCGAGGCAGGAAGCATC
CCTCTCAAGACCGAGACCGCCGTCGTTCTCGTTCCCGCTCTCCGCGCCAT
TCCTCCTCATCCTCTCACTCCTCCCGTCAACGCAACCCTACCTCTGATAG
AGAGCGAGAACGAGGAAGGGAGAGGGATCATCACGACAAGGACCGCCCTC
AGGCTGCCCCCAAGCCCGAGTCTCAAAAGCTTAAGGCGCTCAAAGCGGTT
TATGGAGATGCCTCAGCAGTGAAGGAGGGCAAGTAA

protein sequence of NO05G03580.1

>NO05G03580.1-protein ID=NO05G03580.1-protein|Name=NO05G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MVCALVLRLAAEDELLHPFCRPQRKSHALTTFTSYRAVWQHIRCLCLLQH
ILEPCFTVTINSAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIH
GNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWAT
GTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFAL
DPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLP
RIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADND
PAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEGG
REGGREGGRSRSRSRSRSVSNRWKKKERGRSGSRSRSRSRSRADRGGGRR
RRDGDESEYEGGDGNGGRGGGRGEGESLLGQNLMDAVRRREREAASARGK
DYAQRPTSCKGSLSMKHDTYSHRGRKHPSQDRDRRRSRSRSPRHSSSSSH
SSRQRNPTSDRERERGRERDHHDKDRPQAAPKPESQKLKALKAVYGDASA
VKEGK*

Synonyms

Publications