NO05G03540, NO05G03540 (gene) Nannochloropsis oceanica

Overview
NameNO05G03540
Unique NameNO05G03540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1050
Alignment locationchr5:927319..928368 +

Link to JBrowse

Properties
Property NameValue
DescriptionThioredoxin
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:927319..928368 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0015035protein disulfide oxidoreductase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
GO:0019725cellular homeostasis
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Homology
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: EWM28053.1 (thioredoxin [Nannochloropsis gaditana])

HSP 1 Score: 194.9 bits (494), Expect = 1.800e-46
Identity = 93/107 (86.92%), Postives = 98/107 (91.59%), Query Frame = 0 
Query:   47 DKVQLVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAEGIEDLESRP 154
            DKV L +DFKAFSD TT NER VAYFTASWCPPCRTISPVF+TLS K+ DVKFLK+DVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGAD+KKL EGIEDLE RP
Sbjct:   52 DKVVLAKDFKAFSDETTVNERVVAYFTASWCPPCRTISPVFSTLSSKYSDVKFLKIDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADEKKLTEGIEDLEGRP 158
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: OQR99758.1 (hypothetical protein THRCLA_21795 [Thraustotheca clavata])

HSP 1 Score: 103.6 bits (257), Expect = 5.600e-19
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 0 
Query:   48 KVQLVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADQKKLAEGIEDLES 152
            +VQ+++   A+++      ++V YFTA WC PC+ ISP++A LS    D++F KVDVD  +E A+++ +R +P FHFY  GKL  +  FAGAD KKL   +E+L S
Sbjct:   84 RVQVLDSNDAYAELIAKPSKTVVYFTAQWCGPCKMISPIYAQLSNDFTDIEFAKVDVDELDEVAAQAGVRAMPTFHFYANGKLQNSLGFAGADPKKLLATVENLGS 189
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: XP_012196255.1 (hypothetical protein SPRG_19369 [Saprolegnia parasitica CBS 223.65] >KDO33018.1 hypothetical protein SPRG_19369 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 102.1 bits (253), Expect = 1.600e-18
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 0 
Query:   48 KVQLVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADQKKLAEGIEDL 150
            +VQ+++    ++D      +SV YFTA+WC PC+ ISP++A LS +  DV+F KVDVD  +E A+K+ +R +P FHFY  GKL     FAGAD K+L   ++ L
Sbjct:   28 RVQVLDSDSQYTDLIAKPSKSVVYFTAAWCGPCKMISPIYAQLSNEFPDVEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQPLGFAGADPKQLLANVQKL 131
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: OQR82287.1 (hypothetical protein ACHHYP_16274 [Achlya hypogyna])

HSP 1 Score: 102.1 bits (253), Expect = 1.600e-18
Identity = 46/105 (43.81%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   48 KVQLVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADQKKLAEGIEDLE 151
            +VQ+++    ++D      +SV YFTA+WC PC+ ISP++A LS +  D++F KVDVD  +E A+K+ +R +P FHFY  GKL  +  FAGAD K+L   ++ L+
Sbjct:   28 RVQVLDADSQYTDLIAKPTKSVVYFTAAWCGPCKMISPIYAELSNEFTDIEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQSLGFAGADPKQLFNNVKKLK 132
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: XP_008617943.1 (hypothetical protein SDRG_13624 [Saprolegnia diclina VS20] >EQC28546.1 hypothetical protein SDRG_13624 [Saprolegnia diclina VS20])

HSP 1 Score: 101.7 bits (252), Expect = 2.100e-18
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 0 
Query:   48 KVQLVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGT--FAGADQKKLAEGIEDL 150
            +VQ+++    ++D      +SV YFTA+WC PC+ ISP++A LS +  DV+F KVDVD  +E A+K+ +R +P FHFY  GKL     FAGAD K+L   ++ L
Sbjct:   28 RVQVLDTDSQYTDLIAKPSKSVVYFTAAWCGPCKMISPIYAQLSNEFPDVEFAKVDVDELDETAAKAGVRAMPTFHFYANGKLQQPLGFAGADPKQLLANVQKL 131
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: OEU06051.1 (thioredoxin o [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.7 bits (234), Expect = 2.600e-16
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   52 VEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADQKKLAEGIEDLESRP 154
            + D +A       NE+S+ YFTA+WCPPC+ I PV+ +LS ++ ++ F K+D+D N+++A +  I ++P F F+  KG K  G F+GADQ++L + I+DL + P
Sbjct:   41 ISDNEATDKFIKMNEKSILYFTATWCPPCKLIKPVYESLSNEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNDKGEKKYGQFSGADQEQLKKIIDDLNNEP 144
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: OEU14144.1 (hypothetical protein FRACYDRAFT_189178 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.4 bits (233), Expect = 3.400e-16
Identity = 42/104 (40.38%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   52 VEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADQKKLAEGIEDLESRP 154
            + D +A       NE+S+ YFTA+WCPPC+ I PV+ +LS ++ ++ F K+D+D N+++A +  I ++P F F+  KG K  G F+GADQ++L + ++DL + P
Sbjct:    6 ISDNEATDKFIKMNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDLNNEP 109
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: OEU14145.1 (hypothetical protein FRACYDRAFT_189178 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 94.4 bits (233), Expect = 3.400e-16
Identity = 42/104 (40.38%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:   52 VEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYR-KG-KLVGTFAGADQKKLAEGIEDLESRP 154
            + D +A       NE+S+ YFTA+WCPPC+ I PV+ +LS ++ ++ F K+D+D N+++A +  I ++P F F+  KG K  G F+GADQ++L + ++DL + P
Sbjct:   39 ISDNEATDKFIKMNEKSILYFTATWCPPCKLIKPVYESLSDEYPNISFGKIDIDDNQDSAMEYEISSVPTFLFFNGKGEKKYGQFSGADQEQLKKTLDDLNNEP 142
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: XP_012758261.1 (hypothetical protein SAMD00019534_008400 [Acytostelium subglobosum LB1] >GAM17665.1 hypothetical protein SAMD00019534_008400 [Acytostelium subglobosum LB1])

HSP 1 Score: 91.7 bits (226), Expect = 2.200e-15
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 0 
Query:   48 KVQLVEDFKAFSDATTTNERSVAY-FTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAEGIE 148
            +V+++ D + F++ T    + VA  FTA+WCPPCR I P+F  LS ++ +V FLKVDVD     A +  I  +P FHFY K   V  F+GAD  +L + IE
Sbjct:    5 RVKVLSDGQLFTELTAAGGKLVAVDFTATWCPPCRAIGPIFEQLSNQYTNVVFLKVDVDQCRSTAQQCGISAMPTFHFYIKSTKVDEFSGADPNRLKQCIE 105
[Close]
BLAST of NO05G03540 vs. NCBI_GenBank
Match: XP_012676111.1 (PREDICTED: thioredoxin-like [Clupea harengus])

HSP 1 Score: 90.9 bits (224), Expect = 3.700e-15
Identity = 43/98 (43.88%), Postives = 68/98 (69.39%), Query Frame = 0 
Query:   49 VQLVEDFKAFSDATTT--NERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFLKVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAE 145
            V ++E+ + F +A +T   +  V  FTA+WC PC++I+P F +LS K+ DV FLKVDVD  ++ A + +I+ +P FHFY+ GK V  F+G++++KL E
Sbjct:    2 VLIIENREEFHNALSTAGGKLVVVDFTATWCGPCQSIAPFFKSLSEKYKDVVFLKVDVDDAQDVAQECDIKCMPTFHFYKNGKKVDDFSGSNREKLEE 99
The following BLAST results are available for this feature:
BLAST of NO05G03540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28053.11.800e-4686.92thioredoxin [Nannochloropsis gaditana][more]
OQR99758.15.600e-1944.34hypothetical protein THRCLA_21795 [Thraustotheca c... [more]
XP_012196255.11.600e-1845.19hypothetical protein SPRG_19369 [Saprolegnia paras... [more]
OQR82287.11.600e-1843.81hypothetical protein ACHHYP_16274 [Achlya hypogyna... [more]
XP_008617943.12.100e-1845.19hypothetical protein SDRG_13624 [Saprolegnia dicli... [more]
OEU06051.12.600e-1641.35thioredoxin o [Fragilariopsis cylindrus CCMP1102][more]
OEU14144.13.400e-1640.38hypothetical protein FRACYDRAFT_189178 [Fragilario... [more]
OEU14145.13.400e-1640.38hypothetical protein FRACYDRAFT_189178 [Fragilario... [more]
XP_012758261.12.200e-1543.56hypothetical protein SAMD00019534_008400 [Acytoste... [more]
XP_012676111.13.700e-1543.88PREDICTED: thioredoxin-like [Clupea harengus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR120ngnoR120Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003509NSK003509Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03540.1NO05G03540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584779gene_3163Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g8gene2514Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03540.1NO05G03540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03540 ID=NO05G03540|Name=NO05G03540|organism=Nannochloropsis oceanica|type=gene|length=1050bp
CTACAGGTGCACAACCTCTCCACAACCATCCCAATCAGCATGTTGCTGAG
GCATCTTACACGTTTCTCGACCCGTGTGGCCACCACGACGTCCACCATTC
TTCCTTCCGGCTGCAGCGTCATCGGCGGCAGCAGCAGCGGCAGACGGTCC
TTCGCCGCGGCAGCGGCAGGAGGGAGCGACAAGGTGCAGCTGGTCGAGGA
CTTCAAGGCTTTTTCCGACGCGACCACGACGAATGAGCGTTCAGTGGCCT
ACTTTACAGCCTCCTGGTGCCCCCCATGCCGGACCATCTCCCCCGTGTTT
GCCACGTTGAGCGGAAAGCATGTGGACGTGAAGTTCTTAAAAGTAGATgt
gagtaggggaaatgggaaagggcgcggatagaaaaggggttgatggagta
ttgacctaagcggtgcctgaggaacggatcaagactctgaaaatctgcat
tccttgacacattcctctgtcgtcccctcctccttcttttccctccccct
cagGTTGACGCCAACGAAGAAGCGGCAAGCAAGAGCAATATTCGGACCAT
TCCCGCTTTTCACTTTTATAGGAAGGGCAAGCTTGTTGGCACCTTTGCTG
GGGCCGATCAGAAAAAACTCGCAGAGGGAATTGAGGACTTGGAATCTCGC
CCTTGAGGTGGAAGGGACGGAGGGACGAAAGGGGAGAGATTGGGAATATT
AGTCAAAAATAAATGAAGCATAAGGCGTGTAGCGTGTACGTAGGACGAAA
AAGTAGAAAATACATGAGCAGCGGCCTTTATGGCGCATTTTCAGGTTTAA
TGTGACTAAATCGAAAGAACCTTGCGAGAGGGGGTTATGTCCGCAATAGC
CAGGTGAAAGATGAAGCAAGAAACAAAGCGGCATCTTTCTTTCCGATTGT
GCGTGAGAACGGCAGCGAAGCCTATTTTTGACACGACGACGGTGATGGCG
GGACGAGAGAGAATGAAAATAATGTATACGACGGCAAAACACTGAATTCT
GCGCGTTCAGATTCCACCCTAGTCCTGTGTACATTCTAAGGCAGGAGGTT
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protein sequence of NO05G03540.1

>NO05G03540.1-protein ID=NO05G03540.1-protein|Name=NO05G03540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MLLRHLTRFSTRVATTTSTILPSGCSVIGGSSSGRRSFAAAAAGGSDKVQ
LVEDFKAFSDATTTNERSVAYFTASWCPPCRTISPVFATLSGKHVDVKFL
KVDVDANEEAASKSNIRTIPAFHFYRKGKLVGTFAGADQKKLAEGIEDLE
SRP*
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Synonyms
Publications