NO05G03430, NO05G03430 (gene) Nannochloropsis oceanica

Overview
NameNO05G03430
Unique NameNO05G03430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1410
Alignment locationchr5:902512..903921 -

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Properties
Property NameValue
DescriptionFungal specific transcription
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:902512..903921 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of NO05G03430 vs. NCBI_GenBank
Match: EWM28051.1 (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 282.3 bits (721), Expect = 2.700e-72
Identity = 160/338 (47.34%), Postives = 209/338 (61.83%), Query Frame = 0
Query:  131 SSNTXXXINSSSIKDIPSHTTTFTISSTSMMLDRYPPPWDLVTVLHAAPGLRCYDHCRMAAIIYGETAQCMVTTRQLQYGKTLAILRTWDLYSYRHGFEITCGASEMITRILAILRVQANENGATVXXXXXXXXXXXGSMLGLEFPVERNEELLTMDREKALNPANMPPYVARLRDGGGGDLAVAGFVYCSGEFRLWTCDSFASKFFSAGAANKRFEEMRILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETKEMNMIAETMERDGRLHRSFVRARYMVLNEGQYACFALSILPIPGMPSRYGMTASFAPLPTSSSSSSISPLASTNGFVASPSAA 469
            SS T    NSSS     +H      +S  MM D  PP W L+ VL   PGLR YDHC+  A ++GET   M+ T +LQ+ KTLAILRTWD Y+++HG +I+CGAS  I R+LA+ +  A  +G+                   E PVE N++LL MDR+ AL+ A+MP YV+ L+D  GGD AV G+VYCSG++RLWT   FA +F +A   N  F++ +ILP +LFG   +PNDRP FYR+L+EY+L PT E +EM + A+ ME DG + ++ VRARYMVLNEGQY+CFALS L IPG+P R      F P PT   SS  S  A  +   A P  +
Sbjct:  552 SSCTTEATNSSSHGGSKAH------ASIVMMPDGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLALRKSAAYTSGS--------GESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSLQD--GGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFLQIPGLPVR------FVP-PTIHPSSIASAAADQSRSDACPDVS 866          
BLAST of NO05G03430 vs. NCBI_GenBank
Match: EWM29550.1 (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >EWM29551.1 hypothetical protein Naga_100006g18 [Nannochloropsis gaditana])

HSP 1 Score: 175.6 bits (444), Expect = 3.500e-40
Identity = 102/268 (38.06%), Postives = 142/268 (52.99%), Query Frame = 0
Query:  163 DRYPPPWDLVTVLHAAPGLRCYDHCRMAAIIYGETAQCMVTTRQLQYGKTLAILRTWDLYSYRHGFEITCGASEMITRILAILRVQANENGATVXXXXXXXXXXXGSMLGLEFPVERNEELLTMDR--EKALNPANMPPYVARL-RDGGGGDLAVAGFVYCSGEFRLWTCDSFASKFFSAGAANKRFEEMRILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETKEMNMIAETMERDGRLHRSFVRARYMVLNEGQYACFALSILPI 428
            D  PP W LV  L +APGL    HCR+AA  +      +    +LQ+ K   ILR WD+Y YR   ++TCGA   + RILA                        G  +  +  ++ N  +   DR  E+ L+P +MP YV RL  +      AV G+ Y +G F+LWT   FA K+++A  AN RF +  +LP YL+G +F P DRP FY  L+EYLL   DE + + M+AE +  DG      V+AR+ V+N+GQY  FA+S LP+
Sbjct:    6 DGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILA-------------------SPIPHGVPICYQASLQENISMYD-DRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253          
BLAST of NO05G03430 vs. NCBI_GenBank
Match: XP_005852521.1 (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >EKU23311.1 hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 174.5 bits (441), Expect = 7.900e-40
Identity = 101/268 (37.69%), Postives = 142/268 (52.99%), Query Frame = 0
Query:  163 DRYPPPWDLVTVLHAAPGLRCYDHCRMAAIIYGETAQCMVTTRQLQYGKTLAILRTWDLYSYRHGFEITCGASEMITRILAILRVQANENGATVXXXXXXXXXXXGSMLGLEFPVERNEELLTMDR--EKALNPANMPPYVARL-RDGGGGDLAVAGFVYCSGEFRLWTCDSFASKFFSAGAANKRFEEMRILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETKEMNMIAETMERDGRLHRSFVRARYMVLNEGQYACFALSILPI 428
            D  PP W LV  L +APGL    HCR+A+  +      +    +LQ+ K   ILR WD+Y YR   ++TCGA   + RILA                        G  +  +  ++ N  +   DR  E+ L+P +MP YV RL  +      AV G+ Y +G F+LWT   FA K+++A  AN RF +  +LP YL+G +F P DRP FY  L+EYLL   DE + + M+AE +  DG      V+AR+ V+N+GQY  FA+S LP+
Sbjct:    6 DGGPPGWALVGELQSAPGLDRLSHCRLASTTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILA-------------------SPIPHGVPICYQASLQENISMYD-DRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253          
BLAST of NO05G03430 vs. NCBI_GenBank
Match: EWM25637.1 (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >EWM25638.1 hypothetical protein Naga_100037g11 [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 1.100e-28
Identity = 93/297 (31.31%), Postives = 140/297 (47.14%), Query Frame = 0
Query:  169 WDLVTVLHAAPGLRCYDHCRMAAIIYGETAQCMVTTRQLQYGKTLAILRTWDLYSYRHGFEITCGASEMITRILAILRVQANENGATVXXXXXXXXXXXGSMLGLEFPVERNEELLTMDREKALNPANMPPYVARLRDGGGGDLAVAGFVYCSGEFRLWTCDSFASKFFSAGAANKRFEEMRILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETKEMNMIAETMERDGRLHRSFVRARYMVLNEGQYACFALSILPIPGMPSRYGMTASFAPLPTSSSSSSISPLASTNGFVASP 466
            W L   L    GL  YDHC +AA  + + A  +    +LQ+ K LAI+RTW+     +  + TCG + ++ R+LA        +G                    +  +  +  L  +  +K + P NMP  V  LR+         GFV+  G FR+WT D F++++ S    N    +  +LP + FG IFSP  R  FY  + E++L  + E    +M++ET+ RDGRL +  V  RY +LN GQ + FA+++ P+      Y   A    + TS S S  S L ST     SP
Sbjct:   18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLA----SPTPSGVDCIP---------------QVQMRTDLSLWLLSIDKLMEPKNMPATVRSLREEAVS--MSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPL-----EYSNAAVHDSIATSVSFS--STLISTPQLSLSP 286          
BLAST of NO05G03430 vs. NCBI_GenBank
Match: EWM29539.1 (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana])

HSP 1 Score: 134.8 bits (338), Expect = 6.900e-28
Identity = 88/273 (32.23%), Postives = 137/273 (50.18%), Query Frame = 0
Query:  184 YDHCRMAAIIYGETAQCMVTTRQLQYGKTLAILRTWDLYSYRHGFEITCGASEMITRILAILRVQANENGATVXXXXXXXXXXXGSMLGLEFPVERNEELLTMDREKALNPANMPPYVARLRDGGGGDLAVAGFVYCSGEFRLWTCDSFASKFFSAGAANKRFEEMRILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETKEMNMIAETMERDGRLHRSFVRARYMVLNEGQYACFALSILPIPGMPSRYGMTASFAPLPTSSSSSSISPLA 457
            Y+    A + +G     + T+ +LQ+ + LAI+ TWD  S     +++CGA+ +I R LA L    N   A+                 L+ PV     +      + L   ++P +VA L +G     A  GF+Y  GEFR+WT  +F++++F A  AN    +  +LP YLFG I     +  F+  L  ++LK   E K M+M+A+T+ RD  + ++ +R RY+V N G YAC AL++LPI       G     +P  T S+ SS+ P A
Sbjct:   62 YECSSEAVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASL----NSTYASPV---------------LQVPVRFGTSVACCPAGELLEGVHVPAFVAELDEGATS--ASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI----DYPGAMNGESPAATPSALSSVMPPA 309          
The following BLAST results are available for this feature:
BLAST of NO05G03430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM28051.12.700e-7247.34fungal specific transcription [Nannochloropsis gad... [more]
EWM29550.13.500e-4038.06hypothetical protein Naga_100006g18 [Nannochlorops... [more]
XP_005852521.17.900e-4037.69hypothetical protein NGA_0534002 [Nannochloropsis ... [more]
EWM25637.11.100e-2831.31hypothetical protein Naga_100037g11 [Nannochlorops... [more]
EWM29539.16.900e-2832.23hypothetical protein Naga_100006g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003520NSK003520Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03430.1NO05G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584741gene_3151Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g21gene2504Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03430.1NO05G03430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03430 ID=NO05G03430|Name=NO05G03430|organism=Nannochloropsis oceanica|type=gene|length=1410bp
ATGGCAATCACTGTGCCCGGCGTCTCCCCTTCCTACTTTCTCCAACAAAC
CACCGCATCTGTCGCCGATTGTCGCAACGTCCATCCATCTACCCTGGACC
ACACCCAAAGATGGGAGCGGCAGCAGCCGCAGCAGCAGAAGCCGCAGCAG
CACGATGTGCAGCAGGTAGAGCACAAGGCTATTGCGATACTTGCTCGGTC
GACGGGTGCAGTTTTACCTCCCCCACTGGCATCCGCCTCTCCTGAGAATG
AGAGTGGCAACAGCAGTCCCCACCTTCCTCCGTCCACACATGCCTTCCCC
TCCTCCTTAATCTCCTCCACATCCTCCTGTACCACCATCGGCACCACTAT
GGATAGCGGCCGGAGCAGTGCTCTGAGCAACTTTGGGGGCAGCAGCAACA
CCAACAGCAGCATCAACAGCAGCAGCATCAAAGACATCCCTTCCCACACC
ACCACTTTTACCATCAGCAGCACCAGTATGATGCTCGACAGGTACCCTCC
GCCTTGGGACCTTGTCACTGTCCTTCATGCCGCTCCTGGTCTTCGTTGCT
ACGACCACTGCCGCATGGCCGCGATTATCTATGGAGAGACAGCGCAATGT
ATGGTCACTACTAGGCAGCTGCAGTATGGGAAGACTCTCGCTATTCTTCG
AACATGGGACCTGTATAGTTACAGACATGGGTTCGAGATTACGTGTGGGG
CATCCGAGATGATTACTCGGATCCTGGCCATATTAAGGGTGCAGGCGAAT
GAGAATGGGGCTACGGTGTCCAGCAGCAGCAACAGCAATAGCAGTTCCAC
TGGTTCCATGCTGGGGTTGGAGTTCCCGGTGGAGAGAAACGAGGAGCTTT
TGACAATGGATAGGGAGAAGGCCCTGAATCCTGCGAATATGCCACCGTAT
GTTGCCCGTCTCCGAGACGGGGGCGGAGGCGACTTGGCCGTAGCTGGCTT
CGTATATTGCTCGGGAGAGTTCCGCTTGTGGACCTGCGACAGTTTTGCCT
CTAAGTTTTTCTCTGCTGGGGCTGCGAATAAACGGTTTGAGGAAATGAGG
ATTTTGCCCTCGTATTTGTTTGGACCGATCTTCTCGCCGAATGACCGGCC
GATTTTCTATCGGAATTTGATGGAGTATTTGTTGAAGCCGACGGATGAGA
CGAAGGAGATGAATATGATCGCGGAGACCATGGAGCGTGACGGGCGACTA
CATAGGTCATTTGTGCGCGCCAGGTACATGGTGCTTAATGAGGGACAATA
CGCATGTTTTGCCTTGAGTATTTTGCCGATTCCAGGGATGCCCAGCCGGT
ATGGGATGACTGCTTCATTCGCCCCCCTGCCTACTTCATCTTCCTCGTCT
TCGATTTCGCCGTTGGCGTCGACAAATGGGTTCGTGGCCTCCCCTTCTGC
TGCTTTTTAG
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protein sequence of NO05G03430.1

>NO05G03430.1-protein ID=NO05G03430.1-protein|Name=NO05G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MAITVPGVSPSYFLQQTTASVADCRNVHPSTLDHTQRWERQQPQQQKPQQ
HDVQQVEHKAIAILARSTGAVLPPPLASASPENESGNSSPHLPPSTHAFP
SSLISSTSSCTTIGTTMDSGRSSALSNFGGSSNTNSSINSSSIKDIPSHT
TTFTISSTSMMLDRYPPPWDLVTVLHAAPGLRCYDHCRMAAIIYGETAQC
MVTTRQLQYGKTLAILRTWDLYSYRHGFEITCGASEMITRILAILRVQAN
ENGATVSSSSNSNSSSTGSMLGLEFPVERNEELLTMDREKALNPANMPPY
VARLRDGGGGDLAVAGFVYCSGEFRLWTCDSFASKFFSAGAANKRFEEMR
ILPSYLFGPIFSPNDRPIFYRNLMEYLLKPTDETKEMNMIAETMERDGRL
HRSFVRARYMVLNEGQYACFALSILPIPGMPSRYGMTASFAPLPTSSSSS
SISPLASTNGFVASPSAAF*
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Synonyms
Publications