NO05G03380, NO05G03380 (gene) Nannochloropsis oceanica

Overview
NameNO05G03380
Unique NameNO05G03380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5930
Alignment locationchr5:885609..891538 +

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA pseudouridine synthase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:885609..891538 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
GO:0003824catalytic activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR001406PsdUridine_synth_TruA
IPR020097PsdUridine_synth_TruA_a/b_dom
Homology
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: EWM28056.1 (trna pseudouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 397.5 bits (1020), Expect = 5.100e-107
Identity = 191/282 (67.73%), Postives = 236/282 (83.69%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRARQVGEVLEPHAPETVCRALNALLRGSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTGRSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRIRPELSHTE-TFGELIHVHVCAKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYEEDL 405
            MQRYR+A+QY GTPYSGWQ+  D+LKPAVQDV+E+A++ FVGK N   C ISSRTD+GVHALHNVLH+DL+RRARQVG+V EPH PETV RALN LL+GS +Q+L+C+AV REG  +FHAR+ A ER+Y YRLL+GRSVFEA+RAWCL L  ++++L+V AMHAAAQ LVG+  DF+SFRGKDCQA+SP+K+IRSIDVV   P+  H   T G+++HV + A SFLYHMVRNI GA+ AVG+G+LP  A+ DIL ARDR +APPMAPAQGL+LERVLY++DL
Sbjct:    1 MQRYRLAIQYNGTPYSGWQKGADSLKPAVQDVLESAIHSFVGKDNCGVCQISSRTDSGVHALHNVLHLDLIRRARQVGDVREPHTPETVRRALNHLLQGSEIQVLNCRAVAREGAEAFHARYGALERRYIYRLLSGRSVFEAKRAWCLGLNVTERRLDVAAMHAAAQALVGEHMDFTSFRGKDCQAQSPVKIIRSIDVVHASPDPFHPHATCGDIVHVCMRAHSFLYHMVRNITGALHAVGLGRLPPSAILDILRARDRGIAPPMAPAQGLYLERVLYKDDL 282
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: EFJ25119.1 (hypothetical protein SELMODRAFT_100819 [Selaginella moellendorffii])

HSP 1 Score: 201.8 bits (512), Expect = 4.100e-48
Identity = 128/294 (43.54%), Postives = 175/294 (59.52%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRA-RQVGEVLEPHAPETVCRALNALLR--GSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTG---RSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRI--RPEL-----SHTETFGELIHVHVC---AKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            +QRY V ++YIGT +SGWQR        VQ  +E A   F+G+        SSRTDAGVHAL NV HVDL R + R+ GE+L PH P+ + RA+N  L+   + VQ++D + VP +    FHARF AKER Y YR+L G    S+FE +RAW +     ++ LN+ AM +A QVL+G  +DFSSFR   CQA SP+K +  + +      P L     S+ ++    +  +V    A+SFLYH VR +VG +  VG G+   + ++ ILE R  S+A PMAPA GLFL  V Y+
Sbjct:   27 IQRYLVGIEYIGTRFSGWQRQEGV--RTVQGTLEDAFSSFMGQS--VSTTGSSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLG-THDFSSFRASGCQAASPVKTLEELSIRETVSWPHLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKYD 306
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: XP_002974164.2 (uncharacterized protein LOC9657083 isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 201.8 bits (512), Expect = 4.100e-48
Identity = 128/294 (43.54%), Postives = 175/294 (59.52%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRA-RQVGEVLEPHAPETVCRALNALLR--GSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTG---RSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRI--RPEL-----SHTETFGELIHVHVC---AKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            +QRY V ++YIGT +SGWQR        VQ  +E A   F+G+        SSRTDAGVHAL NV HVDL R + R+ GE+L PH P+ + RA+N  L+   + VQ++D + VP +    FHARF AKER Y YR+L G    S+FE +RAW +     ++ LN+ AM +A QVL+G  +DFSSFR   CQA SP+K +  + +      P L     S+ ++    +  +V    A+SFLYH VR +VG +  VG G+   + ++ ILE R  S+A PMAPA GLFL  V Y+
Sbjct:   27 IQRYLVGIEYIGTRFSGWQRQEGV--RTVQGTLEDAFSSFMGQS--VSTTGSSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLG-THDFSSFRASGCQAASPVKTLEELSIRETVSWPHLLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTAEDVRKILEGRSISLALPMAPASGLFLADVKYD 306
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: EFJ29927.1 (hypothetical protein SELMODRAFT_231248 [Selaginella moellendorffii])

HSP 1 Score: 201.1 bits (510), Expect = 7.000e-48
Identity = 127/294 (43.20%), Postives = 174/294 (59.18%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRA-RQVGEVLEPHAPETVCRALNALLR--GSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTG---RSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVR-------IRPELSHTETFGELIHVHVC---AKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            +QRY V ++YIGT +SGWQR        VQ  +E A   F+G+        SSRTDAGVHAL NV HVDL R + R+ GE+L PH P+ + RA+N  L+   + VQ++D + VP +    FHARF AKER Y YR+L G    S+FE +RAW +     ++ LN+ AM +A QVL+G  +DFSSFR   CQA SPIK +  + +         +    S+ ++    +  +V    A+SFLYH VR +VG +  VG G+   + ++ ILE R  S+A PMAPA GLFL  V Y+
Sbjct:    6 IQRYLVGIEYIGTRFSGWQRQGGV--RTVQGTLEDAFSSFMGQS--VSTTGSSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLG-THDFSSFRASGCQAASPIKTLEELSIRETVSWPHFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKYD 285
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: XP_002968811.2 (uncharacterized protein LOC9658875 isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 201.1 bits (510), Expect = 7.000e-48
Identity = 127/294 (43.20%), Postives = 174/294 (59.18%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRA-RQVGEVLEPHAPETVCRALNALLR--GSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTG---RSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVR-------IRPELSHTETFGELIHVHVC---AKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            +QRY V ++YIGT +SGWQR        VQ  +E A   F+G+        SSRTDAGVHAL NV HVDL R + R+ GE+L PH P+ + RA+N  L+   + VQ++D + VP +    FHARF AKER Y YR+L G    S+FE +RAW +     ++ LN+ AM +A QVL+G  +DFSSFR   CQA SPIK +  + +         +    S+ ++    +  +V    A+SFLYH VR +VG +  VG G+   + ++ ILE R  S+A PMAPA GLFL  V Y+
Sbjct:   38 IQRYLVGIEYIGTRFSGWQRQGGV--RTVQGTLEDAFSSFMGQS--VSTTGSSRTDAGVHALRNVFHVDLARTSKRKPGELLAPHPPDVIVRAVNHFLQRESADVQVVDARFVPPD----FHARFRAKERTYYYRILAGSCRASLFERDRAWHV-----EEPLNLIAMQSACQVLLG-THDFSSFRASGCQAASPIKTLEELSIRETVSWPHFLTGCSSNAQSSNPDLKSYVVTARAQSFLYHQVRLMVGTLKGVGAGKRTVEDVRKILEGRSISLALPMAPASGLFLADVKYD 317
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: XP_008872605.1 (tRNA pseudouridine(38-40) synthase [Aphanomyces invadans] >ETV98408.1 tRNA pseudouridine(38-40) synthase [Aphanomyces invadans])

HSP 1 Score: 197.2 bits (500), Expect = 1.000e-46
Identity = 126/302 (41.72%), Postives = 169/302 (55.96%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRARQVGEVLE--------PHAPETVCRALNALLR--GSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTGRSVFEAERAWCLDLQSS-----------QQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRIRPELSHTETFG---ELIHVHVCAKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            MQRY+V ++Y+GT + G+Q  PDA  P VQ  +E  L   VG GN     +SSRTDAGVHA+ NV HVDL R  R+  +V+E        PH+PE V   +N+LLR     + I   +AV  +    FH+RF A  R Y Y++   R   EA R W  +L  S              L+V AM  A    VG ++DF+SFRG  CQA +P+K +  + V  +  +L     FG   +LI+V   A SFLYHMVRNIVGA+  VG  +L    +  IL+ R+R +AP MAPA GL+L+ V Y+
Sbjct:    1 MQRYKVTVEYLGTAFKGFQAQPDA--PTVQFELEKVLQRLVGAGNMSRVVVSSRTDAGVHAMGNVCHVDLRRTHRRARDVVEPRPEDIEAPHSPEVVRNCMNSLLREHNQPIVIRKVEAVSMD----FHSRFHASGRDYIYQIYAPRERSEA-RLWAKNLTPSTLFTRDTAWHVPMPLDVNAMAEACSYFVG-KHDFTSFRGIKCQALTPVKTVDHVGVQVV--DLPSNFAFGNDLQLINVEASAPSFLYHMVRNIVGALVDVGQHRLQPHDIGRILDGRNRQLAPRMAPAHGLYLKAVKYD 292
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: OUS12073.1 (tRNA pseudouridine(38-40) synthase TruA [Rhodospirillales bacterium 47_12_T64])

HSP 1 Score: 196.1 bits (497), Expect = 2.300e-46
Identity = 124/296 (41.89%), Postives = 173/296 (58.45%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRARQVGEVLEPHAPE-TVCRALNALLRGSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTGRS--VFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRIRPELSHTETFGELIHVHVCAKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE---EDLRNQDEARKD 414
            M RY++ ++Y GT + GWQR  + +  +VQ+V+E A++ F   G   P + S RTD+GVHAL  V  +D           LE   P   V  A+N  +R + V ++D + V +E    FHARF+A ER Y YR++  R+  V + +RAW +      QKL+ +AMH AAQVLVG  +DFSSFR KDCQAKSP+K I  I V R+          GE I + + A+SFLYH VRNI G++  VGMG+   D +  +L A+DRS A  MAPA GL+   V ++   ED+ +   A K+
Sbjct:    1 MPRYKLTIEYDGTDFYGWQRQKEEI--SVQEVLEEAIFKF--SGERIPVFASGRTDSGVHALGQVASMD-----------LEKDFPAFKVREAINFHIRPAKVAVVDAEVVDQE----FHARFSATERSYLYRIINRRAHLVLDHKRAWFI-----PQKLDAQAMHEAAQVLVG-IHDFSSFRAKDCQAKSPVKSINEISVKRV----------GEEIRIELSARSFLYHQVRNIAGSLKKVGMGKWTSDDIHRVLAAKDRSQAGEMAPAWGLYFVGVKFDPQAEDVAHDLSAGKE 261
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: XP_024020646.1 (uncharacterized protein LOC21401429 [Morus notabilis])

HSP 1 Score: 195.7 bits (496), Expect = 3.000e-46
Identity = 131/325 (40.31%), Postives = 183/325 (56.31%), Query Frame = 0 
Query:  116 PPFK---RHSAMQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLR-RARQVGEVLEPHAPETVCRALNALLRGS--GVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTG---RSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRIRPE----------------------LSHTETF--------GELIHVHVCAKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            PP K   ++  +QRY VA++Y+GT +SG Q+  +     V  V+E A + F+G+      + SSRTDAGVHAL NV HVD+ R   R+ GEVL PH P  V RA+N  L+ +   + ++D +++PR+    FHARF A+ER Y YRLL+G    S FE +RAW +      ++L++ AM AA +VLVG  +DFSSFR   CQAKSP+K +  + V  + P                       LS  ET+           + V   A+SFLYH VR +VG V +VG G L    ++ IL+A+  + A PMAPA GL+L  V Y+
Sbjct:   45 PPQKSMSQNPRIQRYLVAIEYVGTRFSGSQQQLNC--RTVMGVLEEAFHKFIGQP--VSIFCSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVKRAVNHFLQKNEGDIMVVDVRSIPRD----FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHV-----PEELDLLAMQAACKVLVG-HHDFSSFRAAGCQAKSPVKTLDELTVTEVLPTPYFPSIMERKQNNLTEKGPQAGLSADETYLGFGMKRRHRCLVVTARARSFLYHQVRLLVGVVKSVGTGNLTVSDVERILDAKTVTAASPMAPACGLYLGHVKYD 355
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: WP_046504057.1 (tRNA pseudouridine(38-40) synthase TruA [Kiloniella litopenaei] >KKJ77876.1 pseudouridine synthase [Kiloniella litopenaei])

HSP 1 Score: 194.1 bits (492), Expect = 8.600e-46
Identity = 119/280 (42.50%), Postives = 165/280 (58.93%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRARQVGEVLEPHAPETVCRALNALLRGSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTGRS--VFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRIRPELSHTETFGELIHVHVCAKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            M RY++ ++Y GT + GWQR  + +  +VQ+V+E A++ F G+      + S RTD+GVHAL  V  VDL +                V  A+N  +R + V +LD + V      SFHARF+A ER Y YR++  R+  V +  +AW +      QKL+V+AMH AAQVLVG  +DFSSFR KDCQAKSP+K I  I V +           GE I + + A+SFLYH VRNI G++  VGMG+   + +K +LEA+DRS A  MAPA GL+   V ++
Sbjct:    1 MPRYKLTIEYDGTDFFGWQRQKEQI--SVQEVLEEAIFKFSGERT--QVFASGRTDSGVHALGQVASVDLEK----------DFPAHKVREAINFHIRPAKVAVLDAEVV----DDSFHARFSATERSYLYRIINRRAHLVLDHNKAWFV-----PQKLDVQAMHEAAQVLVG-IHDFSSFRAKDCQAKSPVKSINRISVTQ----------QGEEIRIELSARSFLYHQVRNITGSLKKVGMGKWTKEDLKRVLEAKDRSQAGEMAPAWGLYFVSVGFD 246
[Close]
BLAST of NO05G03380 vs. NCBI_GenBank
Match: EPS72909.1 (pseudouridine synthase, partial [Genlisea aurea])

HSP 1 Score: 193.7 bits (491), Expect = 1.100e-45
Identity = 125/307 (40.72%), Postives = 175/307 (57.00%), Query Frame = 0 
Query:  124 MQRYRVALQYIGTPYSGWQRNPDALKPAVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLR-RARQVGEVLEPHAPETVCRALNALLR----GSGVQILDCQAVPREGQGSFHARFAAKERKYAYRLLTGR---SVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFSSFRGKDCQAKSPIKMIRSIDVVRIR----PELSHT------------ETFGELIHVH-----VCAKSFLYHMVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLYE 402
            +QRY VA++Y+GT ++G Q+ P A    V  V+E A   F+G+      Y SSRTDAGVHAL NV HVD+ R   R+ GEVL PH P  V RA+N  L+    G  + ++D + VP +    FHAR+ A ER Y YRL++G+   S F+ +R W        ++L++ +M  A ++LVG  +DFSSFR   CQAKSP++ +  + V  I     PE+++             E FG     H       A+SFLYH VR +VG V +VG G+L    ++ IL+AR  + A PMAPA GL+L  V Y+
Sbjct:   10 LQRYLVAIEYVGTQFAGAQKQPAA--RTVVGVLEEAFQKFIGQP--VSIYCSSRTDAGVHALSNVCHVDVERITERKPGEVLPPHDPLIVKRAVNHFLQQKNEGGDIMVIDVRCVPND----FHARYNALERTYFYRLVSGKDAVSSFDKDRVW-----QVPEELDLSSMKKACEILVG-CHDFSSFRSAGCQAKSPVRTLEELSVSAISSSPFPEINNPSRGTSERIEDCGECFGIRKRNHNFLITARARSFLYHQVRLVVGVVKSVGSGELTVSDVERILKARSITAASPMAPASGLYLAHVKYD 302
The following BLAST results are available for this feature:
BLAST of NO05G03380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28056.15.100e-10767.73trna pseudouridine synthase a [Nannochloropsis gad... [more]
EFJ25119.14.100e-4843.54hypothetical protein SELMODRAFT_100819 [Selaginell... [more]
XP_002974164.24.100e-4843.54uncharacterized protein LOC9657083 isoform X1 [Sel... [more]
EFJ29927.17.000e-4843.20hypothetical protein SELMODRAFT_231248 [Selaginell... [more]
XP_002968811.27.000e-4843.20uncharacterized protein LOC9658875 isoform X1 [Sel... [more]
XP_008872605.11.000e-4641.72tRNA pseudouridine(38-40) synthase [Aphanomyces in... [more]
OUS12073.12.300e-4641.89tRNA pseudouridine(38-40) synthase TruA [Rhodospir... [more]
XP_024020646.13.000e-4640.31uncharacterized protein LOC21401429 [Morus notabil... [more]
WP_046504057.18.600e-4642.50tRNA pseudouridine(38-40) synthase TruA [Kiloniell... [more]
EPS72909.11.100e-4540.72pseudouridine synthase, partial [Genlisea aurea][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003524NSK003524Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03380.1NO05G03380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584716gene_3148Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100044g23gene2502Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03380.1NO05G03380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03380 ID=NO05G03380|Name=NO05G03380|organism=Nannochloropsis oceanica|type=gene|length=5930bp
CAAAAACGCTTTAGACTCGTTTCCTTTTTTAAAACGGCACACACATTTTC
CGTATAAAAAAATAACTAATTATTCCTTTATATTTTTCTTTTCTTTTCTG
CTCTTGCATCATTCGCAAGTCGCTTTCTTTTGCTTTATTCCGTTTCCCTC
CTTTGCTTGCCTCTTACTTGTCTCTTCTGTCTCTCTGTGTATATATCCAC
CCTATCAACCACATCACCACCATATTCCCCCCCCCTCTTTTCCTTCCTCT
ACTCCCCTACAAATCACCCATATCCTGATCAGGAGCATCGTAAGGGTTCA
CCATCCCTGGAACCGCCAAACGGCTCGCGCGCTGCTGTTCTTCTTGCTGC
GCACGCTGCAGAGCCGCTTCTTCATGGAACAAATCTGAATTATCCTCAAC
GGAAAATTCTTTAAGTTGCACCAAAAAGTCTCTCAAATGCGTCTTGTACG
CTGCGAGGTCCTTTGATTGGTCGAACAATCCCGATACAAAAGCCACAGTC
ATCGTCCGGGTCAAATTGGGAAAGGATCGAGAAAGGAGCTCTAGCACAGA
TTCACGCATAAATTGCTGGTTGGTCTGCTCGGGGGGTTGAGAAGCAGTGT
CAAACAACGGCGCTGTAACCTGCCCTAGCTCAATCAAGGTGAAGATCTGC
CGCAAAAGAGTCGCATGCATCTTAAAACCACTCTTATGCAATCTATCCGT
CATCACCACGAAAATATCGCTGATTAAATCTGGCAAATAAGCCTGATAGA
AAGCTGGGGCGACCTCAGGAGCCCTTCCTACATTCTGCAGCAAATCAAAC
AGAATCTCCAAGGCCATCTCGGCGATATTCCGATCCGTATGCTTCATCCC
CCAGACAACCGCATCCACTACAAGTTTCTGATGCTCCCCTTTCAACTGCA
GGATTGCCTCGAACGTCGCGTTATTCACAGCCTTCAACAGAGCGTAGAAT
CTTAAGCGGTGCTCCGGGAAATCCTCAAAATTCTTGTTGATCATATCAAG
CGTCACTTCCAAAACATGATCCAAAATTCGAGGAACTTCTGGGACGAGCT
GCGAGCCCAGTTTCTCCACTGCTGCCGCAAACAATGTTAATACCTCGGCA
TCCCTGGCCTCCGGCACGCTTGCCCGGTAATCTGTCAGCACCGGTTCCAA
GATAGGGGGCATGATTTGTTGCGCCACATAGGCAGGGGTCGACTCCGGTT
CGCCGCTCTTCTCAATAAAAGTGGTCAGCAACCGCAAGATCTCCTTTTTT
ATTCCACGCATTGCCCGTACATTCGACATCCGCGTCGCATACTGCCCTTG
TGTCGCCACTGCTTGAGCAACCTGCGAGCTATACGTGCTGTACAAGTTGA
GCAAATCCAAGAAGATAACCCCCAACTGATGCACGTACAACGGTCCCACA
GATGCGCACACCGCCGCGTTTGTCTTCAAAATCTTGGTCAATTCCCGTAT
AACCCCCGCGTCCAAGAGAACCTGCACATTGGATGCCGCCTGCGCCATAA
TCCCCCTCCACACCGAATTCGGCAAGTCCATCAACTTAGCCAGCACCCCA
ACCCGATCAAGGGACACCTGAGGGCCCCTTTCACTCAACATCGTTCCCGT
CGCCTCATAAAACACATAAATTTGGTGCGGCTCCAAATCAGAAGTGTTAT
CCCCGATCTTCGCTACTAACTCCTCGATATACGGCGCAGATTCATTTGCT
TGGACCGTGACAAATTTCCGTTTGCATTTCTGGGCGATTTTGAGGTAGGT
GTCACAGGCCATGTCTTGCACGCCCGGGTGTTTTTCGTGCATGAATTCAA
ACAATTTTGTGACGACGGTGCGGAGGAATTTCCAATGTTTCGGTGCCCGT
AAGAAGCGGGGATATTGCCCGACGACATACATGATGTTACTCGCAACTAC
AGCTTTATTATCCTTCCCTCGTTTCATCTCACACAGGCCCAACAAATCCT
TTATCACTGTCACCAAAAATCGTTTCTCCTCCTCCTCCCCCATGGCACCC
GATATCGAACCAATCGCCCAGCACAACGTATTCAGATTGTTCCAACTCCA
CTCCGTCCCATCCACCTGCTGCGCCAATTTCTCCAGCATAATGCTCTCTG
TATCATCCTGATCCAAGTGCGTGAAATAAACCAAAGCCTCTCTCATCGTC
TTATACTGCGCGATCACCTCCGTATCCTTCGTCTGCTCTCTCACGATATT
CCCTGCCTCATCCTCCACCACCAACACTTCCTCCGGCTTCGCCATCCTGC
TGATAAAGACTACCCGGACTCTCGACAAAATCTGGGCATACAGTTGTTTC
CTCGGCGACCCTCTCCCCCCCTCTCCGTTACCACTTCCATCACTGTACGC
CAAAGTCGTGGTTGACAAGCTCGAGCGATATTGGACATCACCCATGTAAA
GATCCTGCGCCAACACATGCCAGTAATCCAAGCAAATCTTGAACACTTCC
TCCTCCGGCACCTCACTAATCCGCACCAGATAGACCATCCCCATCAGCAA
TGAATCCCGACATTCTGGAACCTCCAATACTTGCAAATGCAACCGGAAAA
AATTACAAAAGAATAAGGCCAATCTCTGAATGAACAAACAATCCACCTCG
TTTTGATTATGGAAAGGAGCGGAGAGATCCGAATCGGGAGGGATGATCGT
CTGCAATTGCGTCAAGAAGGCCAAGAACATTTTTTGATACAACGGCTCGT
ACTGCGGGTCCAGATCTTGTAGCGACGCGATTTCCGTAAGGCATTCTAGC
GTTTCCACTCGGAAGGCAGGAACAACGAAAAAGGTGTCGATGAGGGACTG
AATGAGGGAGGTCTCGAAAATAAATGCGAGCGGGATCCAAGTCAGAAAGC
GTTGCAGTGTCTGCAGGGTGGCTTTGATGAGGGACGGACGTTGGGACCGG
GAAAGAATGAATGAGAGCAGCTCGAAGATCTTGGCAAACTCATGCTGCAG
GCTCTCTTTCAGGGTCTTAATTTTGGCGGTGGTCATTTGGTCCTTTGAGA
AATCGAAGACTTCTTCCGAGAGGAGTTTGAGTATGCGAACATTGTTCTCG
CAAAGCACTTCGGAGGTTTGGGAGAATTGGACGATGTCGCTGATGAAGGA
CGGCCAGTTGTGCGGCCACTCTTGCTTGAGGACTTGGACTAATGCCATGT
TGAGCTTGTTGAGGAAGAGACGCTCGGCGGCCATGCTGGCGTCGTCTTTA
CTTATGTCCACCACCTTACCGACGATATAATTCTTTATCCCTTCTCTCTC
CTCAGCTGGCAGGATCTTCCACCGAGTCTTGATGGTGTCTTCGAGGATTT
GAAGACCGAAAAAACGGGTGGCAGGATTTGTCGAGCGTTCTAGCACGGCG
TCCACCCGCTTCCACATCTCCGAGTCTTGCTGCATCTCCATCATGAGCTG
GTGGGCAGCTTGTCGGTTCGGATCGGATGGATTCTGCGAGCAGGTAACAA
CCTGTGGACAGAGGGAGGATGGAAAGGGGAGAAGAGGTTTATAAGGTAGG
AGTCACGTCAGTGCTGCCGGAGAAAAAAATGCCGGCAAAAACTACTCGCC
ATCCCACCCCACTCCTACAGTCGTATACATTATCCAGTAGCGCCACATCA
AAGGGATGTTCATTGCTCAAAAGGCTGATCCGTGCTTGATCCATGGCGAT
GAATAGGAAGTGATGACGACGTTTCGTTCGCCACTGGGAAGAAGCGCCAC
CACCAAATGCACGCCAAGAAAGATGACGGATGCCGCAAGCTTAAGTCTGC
AAGAACCACTGTGAATAACAAATTTCTGCGCTCAGCTGTGGGACCACGCG
CAATACTTGTCTGCCAGGCCTGTGTATGCGCCGGGTTCGCTTACTTCCTT
CTTCCTTCTCGACCCTGAGAAACCGACACGCGAAAAGCGCCCCCCCACCA
ATAACAGAAGCGGCCCGACGATTCCACGCGAATCCTCCTTCGTACTATCC
GTCTGCACCACGAGCGTGCCCTGTGTTGTTGGTCGCAAGTGCGAGAAAGA
GAAGCGTTGGCCTGTGTTCTGTCGCGTTCATCTTGACGAAGGAATCGAGG
CACACGTCGGCCAACCTGGTGGGAGGCCGGCAATCCATAAAGATGACATT
GCCCAGAGCCGACAAAATTCTGCCTGAGAGCAAGATATCGTGCCGGGGCA
AGGGCATGCCGGCATGGGGGTAATGCTATTGTCATGAGTGTGATCAAAGC
AATGGAATGATCACAGTGAAAAGAAAGATGGAGACTCTGGGCAAGAGGCG
AGGGCTCCTCTGCCCGCTCGCTTGACAGAAGAAACGCACGTGCAGCAGCA
CACTACAGCCCCTATCAGCCACACCTTTATAGCACAGACTAAGACACATG
ATTAAGGCGAAAAGGAAAGCGCCCACGATGCCTAGCAACCAGCTGCTGGC
CTTAACCTCCTCACCTCGAAAGCACAACCAAAAACAACGTATGGACGCCT
CCACGCTTATAATGCCCTTATGTACTCACATTGTTAAGGCTAGTGCCGGG
GTTGCCAGTGCTCGCTGTACATTTTCTATTGGAGCGGCGGAAAGTTTAGT
CGTCTCATTCACGCCCCTGCGCCGCAACAATTGTCACCCAACTCTCACTC
TTCTAAAAATTTCGTCTCCTGAGTGCGTTCATGCCGACCTCTCACAGAAA
AGCCTCACGGACAAGCGCCATGACGTGAGAAATCAGTTTTTCCCACCTTT
CAAACGGCATTCAGCAATGCAGCGTTACCGCGTCGCACTTCAATACATTG
GCACGCCCTACAGCGGCTGGCAACGGAACCCCGATGCTCTCAAACCGGCC
GTGCAAGACGTAGTGGAGGCGGCTTTATATGGCTTTGTAGGCAAAGGGAA
CTTTGAGCCATGCTATATCTCCAGTCGCACTGACGCAGgtatggcgatgt
aggagatggtatgcgagacaataattaattttatgccaatgctgaatctg
tattcactgatcaatcatttgcatccaaactttcgcacagGAGTACATGC
CCTCCACAACGTCCTACATGTGGACTTGCTCCGCCGTGCCCGCCAAGTGG
GCGAAGTCCTAGAGCCGCATGCACCGGAAACTGTCTGTCGTGCTCTCAAT
GCATTACTACGAGGCAGTGGTGTGCAGATCCTCGATTGTCAGGCCGTGCC
ACGGGAAGGCCAGGGCTCTTTCCATGCCCGATTTGCAGCAAAGGAGCGCA
AATATGCCTACCGGCTCCTGACTGGCCGCAGTGTTTTTGAAGCAGAGCGA
GCGTGGTGCCTCGACTTACAATCTTCCCAACAAAAATTGAATGTGGAAGC
CATGCATGCTGCGGCTCAAGTCCTGGTAGGACAAAGGTACGACTTTTCGA
GTTTCCGCGGTAAAGATTGTCAGGCAAAGAGTCCGATAAAGATGATTCGG
AGCATTGACGTTGTGAGGATTCGTCCTGAGCTTAGCCACACTGAGACATT
TGGGGAACTGATCCATGTTCATGTGTGTGCGAAGTCTTTCTTGTATCATA
TGGTCAGAAATATCGTCGGGGCAGTTACCGCCGTTGGAATGGGACAATTG
CCCTTCGACGCGATGAAGGACATTCTAGAAGCAAGAGATAGGAGTGTGGC
TCCTCCGATGGCGCCAGCCCAAGGGTTGTTTCTCGAGAGAGTTTTGTATG
AGGAGGATTTAAGAAATCAAGATGAAGCGAGAAAGGACGGGTTGGAGAAT
GAAGTAGTTGAATAGAGGTCTGGATTCAAGGCAACAGGGCGGGTAAGTGC
TATCCTCGTCTTCCCACATTAGCTTTGTCTGGTACAGAAAAGATGAGCTC
GTACTCACGTAAATCAATACAAACCACAAAATTGTAATTAAAATGGATAT
ACAGAAAAGCTTTTTGACGTAAAGCTATGCTATTTTCAAGAAGCTTCAAT
TGGCCTGCACAATAAAGTGAGAATTATTCT
back to top

protein sequence of NO05G03380.1

>NO05G03380.1-protein ID=NO05G03380.1-protein|Name=NO05G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MIKAKRKAPTMPSNQLLALTSSPRKHNQKQRMDASTLIMPLCTHIVKASA
GVASARCTFSIGAAESLVVSFTPLRRNNCHPTLTLLKISSPECVHADLSQ
KSLTDKRHDVRNQFFPPFKRHSAMQRYRVALQYIGTPYSGWQRNPDALKP
AVQDVVEAALYGFVGKGNFEPCYISSRTDAGVHALHNVLHVDLLRRARQV
GEVLEPHAPETVCRALNALLRGSGVQILDCQAVPREGQGSFHARFAAKER
KYAYRLLTGRSVFEAERAWCLDLQSSQQKLNVEAMHAAAQVLVGQRYDFS
SFRGKDCQAKSPIKMIRSIDVVRIRPELSHTETFGELIHVHVCAKSFLYH
MVRNIVGAVTAVGMGQLPFDAMKDILEARDRSVAPPMAPAQGLFLERVLY
EEDLRNQDEARKDGLENEVVE*
back to top
Synonyms
Publications