NO05G03340, NO05G03340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03340 vs. NCBI_GenBank
Match: EWM28077.1 (Zinc finger, RING-type [Nannochloropsis gaditana]) HSP 1 Score: 246.1 bits (627), Expect = 1.700e-61 Identity = 130/225 (57.78%), Postives = 154/225 (68.44%), Query Frame = 0 Query: 144 PSFSTGRPSLTQ---MDLARQERFRTRHVGLSELVQLPSTVYKELIARRRRERLERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDF------FPPSLSVLLKEGEVKSREEGGKXXXXXXXXXXXGSRGQAPKSFLENIYEIPRMAFMRVGNSLM 360 P FS+ S + MD+ARQERF+TRHVG EL+QLP+T+YKEL+ RRRRERL+RE G+ V++DE+ EEA FV E E +G + WE +E G RHLCVICLEGFTPWD VRELPAC HIHHQRCLD+WLRGAASYEAC+TRSCPTCKTPI F PS +V + E E K G K +P+S L NI+EIPR A+ R GNSLM Sbjct: 157 PPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEA-AFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKM---GAKTDTV-----------SSPRSILSNIFEIPRWAYARAGNSLM 366
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_002178589.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50254.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 81.3 bits (199), Expect = 7.200e-12 Identity = 53/154 (34.42%), Postives = 68/154 (44.16%), Query Frame = 0 Query: 153 LTQMDLARQERFRTRHVGLSELVQLPSTVY---KELIARRRRERLERESGMGVLVDEEAEEAYFVMDEEEGF---RVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK-TPIDFFPP 300 +TQMD+ R R RH+ + + +LP Y K RE ++V EA E + + V E +CVICLE F D +R LP C H H C+D WL G++SYE CYT CPTCK P PP Sbjct: 283 ITQMDIVRMTRNAARHLDVDSIAKLPIMKYRSTKVASPTTAHASTVREGWSWMMVQGEANEEHEYQHYQSSLLSAAVTTSQPNETIVTSAHEDVCVICLECFDDGDSLRVLP-CNHSFHVGCIDRWLSGSSSYEDCYTSGCPTCKICPDGSLPP 435
BLAST of NO05G03340 vs. NCBI_GenBank
Match: GAX15634.1 (E3 ubiquitin-protein ligase RNF13 [Fistulifera solaris]) HSP 1 Score: 75.9 bits (185), Expect = 3.000e-10 Identity = 48/153 (31.37%), Postives = 75/153 (49.02%), Query Frame = 0 Query: 153 LTQMDLARQERFRTRHVGLSELVQLPSTVYK-ELIARRRRERL-------------ERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWEVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK 292 ++QMD+ R R +RH+ + +++LP+ Y+ L A R E + E +LV E + V +++ R + + + E +CVICLE F D +R LP C H H C+D WL G+ S++ C+T CPTCK Sbjct: 288 ISQMDIVRMARSASRHLDVESILRLPTITYQSRLTATRIPEETSSDEEDDHSDSTGKPEEWSWMLVQEGGYGSKEVQHKDKRHRSRSNQKGLPDYAEDD-DVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCK 438
BLAST of NO05G03340 vs. NCBI_GenBank
Match: GAX19162.1 (E3 ubiquitin-protein ligase RNF167 [Fistulifera solaris]) HSP 1 Score: 72.8 bits (177), Expect = 2.600e-9 Identity = 46/155 (29.68%), Postives = 75/155 (48.39%), Query Frame = 0 Query: 153 LTQMDLARQERFRTRHVGLSELVQLPSTVYK-ELIARRRRERL-------------ERESGMGVLVDEEAEEAYFVMDEEEGFRVQGGDEWE--VEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK 292 ++QMD+ R R +RH+ + + +LP+ Y+ L A R E + E +LV E + + +++ R + ++ + + +CVICLE F D +R LP C H H C+D WL G+ S++ C+T CPTCK Sbjct: 193 ISQMDIVRMARSASRHLDVESIFRLPTITYQSRLTATRIPEETSSDDEDDHSDSTGKPEEWSWMLVQEGGYGSKEIQHKDKRHRSRNFPSYQKGLPDYTEDDDVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCK 346
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_004967070.1 (RING-H2 finger protein ATL32 [Setaria italica]) HSP 1 Score: 66.6 bits (161), Expect = 1.800e-7 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0 Query: 233 EGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPSLSVLLKEGE 310 E + G C ICL +VV++LPAC H+ H+ C+DVWLR +CP C++P+D PP + +L E Sbjct: 84 EKKAGGDECAICLGELQRGEVVKQLPACTHLFHEGCIDVWLRSNV--------TCPACRSPVDAAPPVAAQILLRTE 152
BLAST of NO05G03340 vs. NCBI_GenBank
Match: KQL10881.1 (hypothetical protein SETIT_007951mg [Setaria italica]) HSP 1 Score: 66.6 bits (161), Expect = 1.800e-7 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0 Query: 233 EGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPIDFFPPSLSVLLKEGE 310 E + G C ICL +VV++LPAC H+ H+ C+DVWLR +CP C++P+D PP + +L E Sbjct: 122 EKKAGGDECAICLGELQRGEVVKQLPACTHLFHEGCIDVWLRSNV--------TCPACRSPVDAAPPVAAQILLRTE 190
BLAST of NO05G03340 vs. NCBI_GenBank
Match: OEU21552.1 (hypothetical protein FRACYDRAFT_235176 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 66.2 bits (160), Expect = 2.400e-7 Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 0 Query: 240 LCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCK 292 +CVICL+ F D +R LP C H H C+D WL G+ SY C+T CPTCK Sbjct: 694 VCVICLDAFREGDRLRVLP-CDHSFHVGCIDRWLSGSHSYNECFTAGCPTCK 744
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_020151094.1 (E3 ubiquitin-protein ligase ATL9-like [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 64.7 bits (156), Expect = 7.000e-7 Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 0 Query: 234 GEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPID 296 GEG H C +CL P +VV++LPAC H+ H RC+D WL R+CP C++P+D Sbjct: 103 GEG--HECAVCLAEIKPKEVVKQLPACTHLFHDRCIDEWLWS--------HRTCPVCRSPVD 154
BLAST of NO05G03340 vs. NCBI_GenBank
Match: XP_003079051.1 (Zinc finger, RING/FYVE/PHD-type [Ostreococcus tauri] >CAL51932.1 Zinc finger, RING/FYVE/PHD-type [Ostreococcus tauri]) HSP 1 Score: 64.3 bits (155), Expect = 9.100e-7 Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0 Query: 230 EVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPI 295 EV E EG C ICL+ +T + +R LP+C+H+ H+ C D+WLRG+ +CP C+T + Sbjct: 392 EVIESEGHDPTCTICLDDYTNGEELRRLPSCKHLFHKECADLWLRGSC--------TCPICRTSV 448
BLAST of NO05G03340 vs. NCBI_GenBank
Match: OUS49687.1 (hypothetical protein BE221DRAFT_66928 [Ostreococcus tauri]) HSP 1 Score: 64.3 bits (155), Expect = 9.100e-7 Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0 Query: 230 EVEEGEGGRHLCVICLEGFTPWDVVRELPACQHIHHQRCLDVWLRGAASYEACYTRSCPTCKTPI 295 EV E EG C ICL+ +T + +R LP+C+H+ H+ C D+WLRG+ +CP C+T + Sbjct: 392 EVIESEGHDPTCTICLDDYTNGEELRRLPSCKHLFHKECADLWLRGSC--------TCPICRTSV 448 The following BLAST results are available for this feature:
BLAST of NO05G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 10
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03340 ID=NO05G03340|Name=NO05G03340|organism=Nannochloropsis oceanica|type=gene|length=1409bpback to top protein sequence of NO05G03340.1 >NO05G03340.1-protein ID=NO05G03340.1-protein|Name=NO05G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=373bpback to top Synonyms
Publications
|