NO05G03280, NO05G03280 (gene) Nannochloropsis oceanica

Overview
NameNO05G03280
Unique NameNO05G03280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1911
Alignment locationchr5:851766..853676 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:851766..853676 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036426Bulb-type_lectin_dom_sf
Homology
The following BLAST results are available for this feature:
BLAST of NO05G03280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03280.1NO05G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03280.1NO05G03280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03280 ID=NO05G03280|Name=NO05G03280|organism=Nannochloropsis oceanica|type=gene|length=1911bp
ATGGCCAAGGTGCGCGGGGCCAGCGCTAAAGGAATCTCGCCATCTAAATC
ACCTTCCCGGCGACGCTCCCCTCGCAAGTCCGCCCTAGCAAGGGACTCGG
CAGTCACCAGAACACCCTCCCCGACCCGATCAAGACGAAAGACTCCCGGG
ATTGCGACTCCCGGGAGCGCGACAAAACGAGGTGGAGGAAGTCGGCGAAA
GGCAGCCTCTGTCCCGTCAAATAATACTTTCCATGGTGATGCTACTGCTG
GAGGAGGAGGAGTAGAAGGAGGAGGAGGAAAAGAAGGATGTGGGATAGCA
TCAATTGGTGCCACCACCAAGGAGGACCATGATGCGCATCGCTTGCGAGG
ACCGTATCTGGTCGCCCTGCTGGTAGTAGTGCTCAGCATACATGCCATTG
CCTTCGGCATAGCTTCTTCTTCCTCGCCCTCGTCTACGTCTTGGTCGTGG
GCTTCAATACGGAAGAAAGTGGGAGGATCGAAATGGGAGTCCTTGTCAAG
GCAAAACCTCAAGGTGGTCACCACTGCCGCTCCCTCTACCAATATCAATC
AGCAGCAGGAGAATGAGGAGGGGGAGAGGGAGAAGAAGGAGGAGGAACAT
CAGCAGCAGCAGCTGCCGCTCCAAAGGAAGTTTAAGAGTAAGAGTCAAGA
AGCAGAACCAGTACAAGTAAAAGAAATTGAGAATAAAGGGGAAGAGCGGG
AAGGGAATGGGAGGGTGGAGAAAAAGGTGGTGCCCGCCACGATGATGTCC
AAATCTGACATCTCGGTCGTTGAGGAGGAAGCACGAGACGCAGCCCGTGT
GGCCGAGCAGGAATCGGATGGGCAGCAGCAGCAGGTGGAGGATGTAGAGG
CGTCCGTGTCTGCCACTGAAGTGCCTTCACGAGAGCAACAGCATCAGCAC
GAGCAGCTGCACCAGCATCAGCCGCCGCAGCAACAAGAAGAAAATGCCCC
AGATTTCCGGCCTTCACCCTTGGAGCAGCCGATCGTAGGCCCATGCGTGC
AAGCAGACGTATTTGACACGTCCCAATTACCAAAACAGCAGCACGGAGAA
ATGGACGAAGAACATCACGAGGAGCATCCGGACATGGAATCGCAGCGTAG
CCCTGAAGGAGAGCCTTCTCCCACAGCCACCGACTCTTCACCGGAGCCGC
AGGTGCCGGAGCAGGATGATGAGCAGCAGCAGCAGCCTCTCACACGAGAA
GATACAGATGGTATGCCGAGGCCGCCATCATCGACACCCCGTAATCACCT
CCCCCCTACTCAAACTGCAACACCTTCATCACACCAAGAGCAGCCACAGG
GAGACAATGATGAAAACATCGCGGCTGCTACTGCTGACGCCGCTGCTGCT
GCTCCCCGAAAGTCCAACCCCAGCAGCAGCACTACTGTACCAACACCAAC
GCCCGCTGGAAACACTCGTCGTCATCACGCGAACCGCGAGCAGCGGCAGC
GGCAGCGGCAAAATCCCGTCCCTCGACCTTCCCATATACTCCGCGTGGGG
GTTTCATTAAAAGAAGGCGACAAGATGGGAAATAGGTGCTATGAACAAGG
TGTGGAAGGCTGGTGCGCGCCCGCCACACACCTCCTGCTGGACAGCAAGG
GGAGGCTAGAGCTAAGGGAGGGGTGGGGGGAGGGAGAAGAAAAGAAGTGG
GGTGCGAAGAAGCGGTTGCTCGCTTTTTCGTTCGCACGGCAGAAGAGGGT
GATGGAAGGGAGGGACGGAAGGAGAGAGGGGGGGCATGAATTGGTGCTGT
CGCCGAGGGGGGTTCTGGAGTTAAGGGGGCCGAGTGGCACATGGTTGTGG
AGGTCGAATGTGGAGGGGGAGGAGAATGAGGAGTACCAGGCGTTTGTGAG
CGATGAAGGGAGGTTAGTTGTCTATCTTGAGAACTCAATTCATTGGAAGT
CACCAACATAG
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protein sequence of NO05G03280.1

>NO05G03280.1-protein ID=NO05G03280.1-protein|Name=NO05G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MAKVRGASAKGISPSKSPSRRRSPRKSALARDSAVTRTPSPTRSRRKTPG
IATPGSATKRGGGSRRKAASVPSNNTFHGDATAGGGGVEGGGGKEGCGIA
SIGATTKEDHDAHRLRGPYLVALLVVVLSIHAIAFGIASSSSPSSTSWSW
ASIRKKVGGSKWESLSRQNLKVVTTAAPSTNINQQQENEEGEREKKEEEH
QQQQLPLQRKFKSKSQEAEPVQVKEIENKGEEREGNGRVEKKVVPATMMS
KSDISVVEEEARDAARVAEQESDGQQQQVEDVEASVSATEVPSREQQHQH
EQLHQHQPPQQQEENAPDFRPSPLEQPIVGPCVQADVFDTSQLPKQQHGE
MDEEHHEEHPDMESQRSPEGEPSPTATDSSPEPQVPEQDDEQQQQPLTRE
DTDGMPRPPSSTPRNHLPPTQTATPSSHQEQPQGDNDENIAAATADAAAA
APRKSNPSSSTTVPTPTPAGNTRRHHANREQRQRQRQNPVPRPSHILRVG
VSLKEGDKMGNRCYEQGVEGWCAPATHLLLDSKGRLELREGWGEGEEKKW
GAKKRLLAFSFARQKRVMEGRDGRREGGHELVLSPRGVLELRGPSGTWLW
RSNVEGEENEEYQAFVSDEGRLVVYLENSIHWKSPT*
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Synonyms
Publications