NO05G03210, NO05G03210 (gene) Nannochloropsis oceanica

Overview
NameNO05G03210
Unique NameNO05G03210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2228
Alignment locationchr5:832298..834525 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:832298..834525 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO05G03210 vs. NCBI_GenBank
Match: EWM28084.1 (hypothetical protein Naga_100120g7 [Nannochloropsis gaditana])

HSP 1 Score: 70.5 bits (171), Expect = 1.400e-8
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 0 
Query:  242 YQLDKGELVQKLLRRWWYAIEWPDAACATLPPP 275
            Y LDKGELVQKLLRRWWYAI+WPD++CAT PPP
Sbjct:  217 YMLDKGELVQKLLRRWWYAIQWPDSSCATQPPP 249
The following BLAST results are available for this feature:
BLAST of NO05G03210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28084.11.400e-884.85hypothetical protein Naga_100120g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003544NSK003544Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03210.1NO05G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669917gene_3127Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100120g7gene2483Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03210.1NO05G03210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03210 ID=NO05G03210|Name=NO05G03210|organism=Nannochloropsis oceanica|type=gene|length=2228bp
CTAATGCAAGGGGGGGGAGGCTGGCTTACCAATTCCTTGCTTTGGTTTCT
GTGGTTCACCATTTATCCCGGACGTTGTGCCATCCTAACGGCAGCGTAGA
GATCTTGAGAAGTTCCTGGTCAGGGGGCGTGGACGACCTTGTCCGCGTCT
TTTCGCTTATTTTCTTCACACTCGCATCCTCTGATTCTTCTTTCACCACA
CGCAACATAATACATCACAGGAGACCGTAACGCCCCCTTTTGGTCACGCG
GGGACGCGAACACCATCACGCTTCTGGTAGCCTTGCTTATGGAGCACGGC
ACCAGgtaggtggtcaattgactgtagaagagggaacgaggatcagccaa
atgtgcttccatccaccacccgtctcccaaggcacaaggcccacttacac
cctccatctaactccacgacagCAACGACGCTGCATCCAGCACTCCTGCT
GCCTCAGTGACTCAAGCCATCCCCGCCCAAGCTGTAGCTGTATCCGCAGC
CCAGGTTGACCCTCCCCCACCCTCGGCCTCCCTCAAAGCCGTCGCCGGAA
GCTCCGGTGTCATTGAAAGCGACGACGAGGACGACATGCCTCTCACTTCG
TTGGCTAAGAACGGAAAAGCCGTCACCGGTGACGATTCAAGCGGGACTAC
GGCTGTCTCCTCTTCTTCAGGCGGTGCGGCCTCTAATCCTGCTGTCGCTG
TTGCTCCTGCTCCCAAGGCGGCGGCGGCGCCTGCATCAGCAGCACCCGCA
CCAGTACCCGCAGCATCGACAGCAGCAGCACCGAAGTATTTGAATGACGA
CGACATGCCTATTTCCAAGCTTTTTCATTATCCACCTGTTGCTGCCTCTG
CTAATGGCGGCGGCAGCAGCACAGCGAAGAAGAGAAAAGAATCGGAGGGT
GGCGGCGGAGGAGGAGGGGAGGAGAGAAAGAAAAAGTCTAAGTCTGACAA
GGAAAAGGAGGAAGAAGAAGAGGCGGCAAGGCAAAAAGAAAAGAAAAAGA
ATAAAAAAGAGCTGGAGCGGGAGACGGAGAGCAGTACGGAGGCGGCGAAT
AGCAGCAAGGCCAAGTCATTTTCGAGGAGCAGCGGCAGCAGCAAGTCAGC
AGCGCACGGGGCGCGAACACAAGATTTCTACCAGTTGGACAAGGGTGAAT
TGGTGCAAAAATTGTTACGGCGATGGTGGTATGCGATTGAGTGGCCCGAT
GCAGCCTGTGCCACGCTGgtaagtaggaagggagagagggagggagggag
gaaagggtggacgtgttgaagatagggttgtggggtttcgtgacactaat
tctctgcgtgtcgcctcttcatgccagtcatacttctatgggtcatgaat
gaaaggacgcttccgacgacaccaggtccacgcactcactcccctttctt
cctccctttctccctcttcagCCCCCCCCCCTAACTACGAGACGCTGGAG
GGGTACCCCGGCGTGTTTGTCTGCGTCCGTGGCCCTCGCATTGGTCACGT
GCTCGACAAGCGGGACCACGCCACCTGCCCGAACTTCAATAATTTTTCAA
GGAAACCGTCGGCAGAGCTCAAGGAGTTGTTGTTCAAGGCTTTGGATGAA
CAAAAGCGGCAACTTATGGAGCACGAAGGGGGAAACTATAAGCTTGAGAA
ACGGATTGACAAGGAGAGGAGATGGGCGGAGAAACTGGATGCGGGGAGGG
CGGATAAGGAAGCGAGGAGGAGAGGGTGGGAAGTGGTGGAGGAAAGGGGG
GGGGGCGACGTGGAGGGGGGAGGAGAAAAAAAGGAATTTTGAGGGGGGAA
AGAGAATGTGGGAGCGAGAGAGGGATGAATGGGGTAGAGGAATTAGGTAC
TGAGAATGAAAAGTCGACAGGAATCAAATAGATGTGTGTAATGAAACATT
AGATAGAAGCAGACTGTTGCGAATTCACAGGGGGGGATTGGCTGTCGTGT
ACGGGCGGTAGGAAGGCCGTGAGCCATGCCTTCCCTTAAGTGATTGAAAG
AGAGCCCTTCTGCAGCAGGAGTCTTTACGAGACGGCGATGGTCATGCCGA
GGGTTACAAAGGATTCTAAGGCCTGCCGCACGTGGTACCCACCTCAAAAA
AGAGCTCGGGAGCGAAAGGGGAGGGGGAGGGGAGACAATAACCCGAAGGC
AAGACGAGGACAATCAAAATGGAAGACATCACACGCTGTCCACACACCAT
GAGTAAACAAAAGAACGGAAAAGAAAGG
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protein sequence of NO05G03210.1

>NO05G03210.1-protein ID=NO05G03210.1-protein|Name=NO05G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MEHGTSNDAASSTPAASVTQAIPAQAVAVSAAQVDPPPPSASLKAVAGSS
GVIESDDEDDMPLTSLAKNGKAVTGDDSSGTTAVSSSSGGAASNPAVAVA
PAPKAAAAPASAAPAPVPAASTAAAPKYLNDDDMPISKLFHYPPVAASAN
GGGSSTAKKRKESEGGGGGGGEERKKKSKSDKEKEEEEEAARQKEKKKNK
KELERETESSTEAANSSKAKSFSRSSGSSKSAAHGARTQDFYQLDKGELV
QKLLRRWWYAIEWPDAACATLPPPLTTRRWRGTPACLSASVALALVTCST
SGTTPPARTSIIFQGNRRQSSRSCCSRLWMNKSGNLWSTKGETISLRNGL
TRRGDGRRNWMRGGRIRKRGGEGGKWWRKGGGATWRGEEKKRNFEGGKRM
WERERDEWGRGIRY*
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Synonyms
Publications