NO05G03200, NO05G03200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03200 vs. NCBI_GenBank
Match: EWM28093.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 542.7 bits (1397), Expect = 1.100e-150 Identity = 269/365 (73.70%), Postives = 310/365 (84.93%), Query Frame = 0 Query: 101 DLARAAAASDAEKAVTALNKFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAKQPDLRLYLAPLIDADEAAERPVVEMFVKEVEKLGGLHVAEQGGEG 466 DL +AAAASDAEKA+ AL+KFPHMP EPT+LVYNVAIGTCVRAGQMGKA+GLLNQLFES+K HV+PN LTYNLL+ GAARAGDW QAQ F +EML+H++RP+A TYQ LL+ACGK K+KKMV +LLSQ+ GPK +YTTAIAASARCGDW+GALALLRQ++EE G P A+ AAMFAC+KP+PARW E LDLL EMRS GLPVGLTAYNTAILCAG+AHE AVAQRLLDE+K GK G + PNNGSYRG++K LAK+G +EKCL +LEEMA+ LEPDLL++TDAMEVFARS NPGAT+R+L+QMK AKQPDLRLYL PLIDADEA+ERPV+ FV+EVEKLG LHVAE GEG Sbjct: 74 DLGKAAAASDAEKAIAALSKFPHMPPEPTLLVYNVAIGTCVRAGQMGKAMGLLNQLFESRKEHVLPNSLTYNLLLLGAARAGDWPQAQGFHEEMLRHRVRPNADTYQNLLVACGKGKDKKMVGDLLSQVIGPKPSHVYTTAIAASARCGDWEGALALLRQLREESGRTPEPEAFHAAMFACTKPEPARWMECLDLLGEMRSAGLPVGLTAYNTAILCAGLAHEPAVAQRLLDELK---------AGKAGNVAPNNGSYRGVVKGLAKSGDHEKCLNLLEEMAQAKLEPDLLIFTDAMEVFARSQNPGATLRVLHQMKAAKQPDLRLYLGPLIDADEASERPVLSAFVQEVEKLGALHVAE--GEG 427
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_013468247.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Medicago truncatula] >KEH42284.1 PPR containing plant-like protein [Medicago truncatula]) HSP 1 Score: 78.2 bits (191), Expect = 7.600e-11 Identity = 63/302 (20.86%), Postives = 127/302 (42.05%), Query Frame = 0 Query: 118 LNKFPHMPA--EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 +N P +P P +Y + ++AG++ + +L + + + P+H++Y +V +AG +A EM + + + TY LL G K+ +M A+ LL++M E+ G+EP V +Y + C D + +L EMR+KG+ +Y T + ++ + +AQR+ DEM + R+ + ++ L++ ++ G E+ V+++M + G P++ Y + + PG + + N++K Sbjct: 343 VNDLPLLPKAYTPNTRIYTTLMKGYMKAGRVADTVRMLEAMRYQEDSSSHPDHVSYTTVVSALVKAGFMDRAHQVLAEMTRIGVPANRITYNILLK--GYCKQLQM------------------------------DKAMELLQEMAEDIGIEPDVVSYNILIDGCILVDDS--AGALSFFNEMRAKGIAPTKVSYTTLMKAFALSGQPKLAQRVFDEMVTD-----------ARVRVDLIAWNMLVEGYSRLGLVEEVKKVIQKMKENGFYPNVSTYGSFANAISLARKPGEALILWNEVK 599
BLAST of NO05G03200 vs. NCBI_GenBank
Match: GAX28990.1 (hypothetical protein FisN_1Hh012 [Fistulifera solaris]) HSP 1 Score: 75.1 bits (183), Expect = 6.500e-10 Identity = 77/342 (22.51%), Postives = 134/342 (39.18%), Query Frame = 0 Query: 121 FPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARA-------------------GDWTQAQSFRDEMLQHQ--------LRPDAHTYQGLLMACGKAKEKK----MVAELLSQIDGPKLVP-----------IYTTAIAASARCGDWQGALALLRQMKEEDG--LEPGVGAYQAAMFACSKPDPARWTESLDLLREM-RSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 FPH E ++ Y AI C GQ A L++++ +K V PN +T+ ++ A A D T ++ ++ M + + P+ H Y L C +A + K + EL+ D +P + T + A R G +G + R M++ G ++P Y AA+ AC + S L +M ++ L + YNT +L A R L + PN SY+ +I++LA + L +L++M + G PD+ LYT + F ++ P ++++ M+ Sbjct: 212 FPH--EEANVVAYTAAIAGCESEGQWKVAFRLVDRM---RKRGVQPNEMTFVAVLAACATACARQASTLASKTSTDVSAPKDITSSEPYQQAMKLLRVLKKDTTVVNPNIHVYNAALRVCAEACDLKGAFALYNELIEDRDSSANIPEGTVTLAPNIVTFGTLMTACERVGSMEGVTQVFRWMQDLSGPPIKPNEIVYGAALSACRRAQNDE--RSFFLFEQMLQNPKLRPNVATYNTVLLAQTEAGTKTSTARALSVFRS--------LYNSPYTQPNRQSYQIIIRALALDRRPLEALTLLQQMQQAGFRPDVDLYTCTVAAFEKTGQPAQALKLMEAMR 538
BLAST of NO05G03200 vs. NCBI_GenBank
Match: GAU26737.1 (hypothetical protein TSUD_317350 [Trifolium subterraneum]) HSP 1 Score: 74.7 bits (182), Expect = 8.500e-10 Identity = 62/261 (23.75%), Postives = 113/261 (43.30%), Query Frame = 0 Query: 166 PNHLTYNLLVFGAARAGDWT------QAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQ---IDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 PN Y L+ G +AG T +A +D+ H PD +Y ++ A KA E+L++ I P Y + + A LL++M E+ G++P V +Y + C D + +L EMR+KG+ +Y T + ++ + +AQR+ DEM + R+ + ++ L++ ++ G E+ V+++M + G PD+ Y A + PG + + N++K Sbjct: 371 PNTRIYTTLMKGYMKAGRVTDTVRMLEAMRCQDDSASH---PDHVSYTTVVSALVKAGFMDRACEVLAEMTRISVPANRITYNILLKGYCKQLQMDTARELLKEMAEDAGIQPDVVSYNILINGCILVDDS--AGALSFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAQRVFDEMAND-----------TRVRVDLIAWNMLVEGYSRLGLVEEAKKVIQKMKENGFYPDVSTYGSFASGIALARKPGEALILWNEVK 615
BLAST of NO05G03200 vs. NCBI_GenBank
Match: PIN18480.1 (hypothetical protein CDL12_08852 [Handroanthus impetiginosus]) HSP 1 Score: 74.7 bits (182), Expect = 8.500e-10 Identity = 63/298 (21.14%), Postives = 125/298 (41.95%), Query Frame = 0 Query: 120 KFPHMPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 + PH A P +Y + ++AG++ + +L + + + P+H++Y ++ +AG +A+ EM + Q+ + TY LL K +L QID A L+R+M +E G+EP V +Y + C D + +L EMR +G+ +Y T + + + +A ++ DEM K+ R+ + ++ L++ K G ++ ++++M G+ P++ Y A + PG + + N++K Sbjct: 363 ELPHAVA-PDSRIYTTLMKGYMKAGRVADTVRMLEAMRHQKDSSSHPDHVSYTTVISAFVKAGLMDRARQVVTEMARIQVPANLITYNILL--------KGYCQQL--QID----------------------KAEDLIREMVDEAGIEPDVVSYNTLIDGCILVDDS--AGALTYFNEMRKRGIAPTKVSYTTLMKAFASSGQPKLANKVFDEMLKD-----------PRVKVDLVAWNMLVEGYCKLGLVDEAKSIIQKMKDNGVHPNVATYGSLANGIALARKPGEALLLWNEIK 614
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_015062642.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like isoform X1 [Solanum pennellii]) HSP 1 Score: 73.6 bits (179), Expect = 1.900e-9 Identity = 75/333 (22.52%), Postives = 140/333 (42.04%), Query Frame = 0 Query: 127 EPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKA-KEKKMVAELLSQIDGPKLVP-IYTTAIAASARCGDWQGALALLRQMKEE---DGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAK-QPDLRLYLAPLIDADEAAERPVVEMFVKEVEKL 454 EPT +Y IG R+ + KA LLN + + H P+ TY++L+ A + +S ++M + P+ T +L G+A K +M L+ ++ P +T S C +G + ++ + E+ G+EP + + A K + + ++ MR P + YN I A E + D+M+ EG + + ++ L++ A AG + K + ++ K + + L+ + A++ + R+ +MK + QPDL Y + +IDA + E +++ E EKL Sbjct: 165 EPTPELYTALIGAYCRSNILDKAFSLLNAMID--LPHCQPDVYTYSILIKACVDASRFDLVESLYEQMADRSIVPNTVTQNIVLSGYGRAGKYAEMEKVLVGMLESADSKPDEWTMNTILSIFCN--KGLIVMMERWYEKFCNFGIEPETRTFNILIGAYGK--RKMYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFSDAGEAKHMEYTFDQMRAEG------------MKADTKTFCCLVRGYANAGLFHKVINTVQLAGKLEIPENTSLFNSVIYACAKAEDVMEMERVFKRMKDKQCQPDLMTY-STMIDAYQ-KEGMTDKVYDLEQEKL 477
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_010107596.1 (pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Morus notabilis] >EXC16278.1 hypothetical protein L484_024452 [Morus notabilis]) HSP 1 Score: 72.4 bits (176), Expect = 4.200e-9 Identity = 60/290 (20.69%), Postives = 120/290 (41.38%), Query Frame = 0 Query: 128 PTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 P +Y + ++AG++ + +L + + + P+H++Y +V +G +A+ EM + ++ + TY LL G K+ QID K LL++M E+ G+EP V +Y + C D + +L EMR+KG+ +Y T + ++ + +A ++ DEM + R+ + ++ L++ K G E+ +++ M + G P++ Y A + PG + + N++K Sbjct: 373 PDSRIYTTLMKGYMKAGRVTDTVRMLEAMRHQEDSASHPDHVSYTTVVSAFVNSGSMDRARQVFAEMTRIRVPANRITYNILLK--GYCKQ--------LQIDKAK----------------------ELLKEMAEDAGIEPDVVSYNILIDGCILVDDS--AGALTFFNEMRAKGIAPTKISYTTLMKAFALSGQPKLAHKVFDEMLDD-----------PRVKADIIAWNMLVEGYCKLGLVEEAKKIVQRMKENGFHPNVATYGSLANGIAVARKPGEALLLWNEVK 617
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_008369807.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Malus domestica]) HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9 Identity = 60/286 (20.98%), Postives = 117/286 (40.91%), Query Frame = 0 Query: 132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 +Y + + AG++ + +L L + P+H+TY ++ +AG +A+ EM + + + TY LL K +L QID K LLR+M ++ G+EP V +Y + C D + +L EMR+KG+ +Y T + ++ + +A ++ DEM + R+ + ++ L+++ + G E+ +++ + G PD+ Y A + PG + + N++K Sbjct: 380 IYTTLMKGYMNAGRITDTVRMLEALRHEDDSASHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------ELLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALAFFNEMRTKGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRLGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 620
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_009358186.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Pyrus x bretschneideri]) HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9 Identity = 60/286 (20.98%), Postives = 117/286 (40.91%), Query Frame = 0 Query: 132 VYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 +Y + + AG++ + +L L + P+H+TY ++ +AG +A+ EM + + + TY LL K +L QID K LLR+M ++ G+EP V +Y + C D + +L EMR+KG+ +Y T + ++ + +A ++ DEM + R+ + ++ L+++ + G E+ +++ + G PD+ Y A + PG + + N++K Sbjct: 380 IYTTLMKGYMNAGRITDTVRMLEALRHEDDSASHPDHVTYTTVISAFVKAGSMDRARRVLAEMTRVGVPANRITYNILL--------KGYCQQL--QIDQAK----------------------QLLREMADDAGIEPDVVSYNILIDGCILVDDS--AGALAFFNEMRTKGIAPTKISYTTLMKAFALSGQPKLANKVFDEMLND-----------PRVKADLVAWNMLVEAYCRLGLVEEAKKIIQRIKDNGFHPDVATYGSLANGIALARKPGEALLLWNEVK 620
BLAST of NO05G03200 vs. NCBI_GenBank
Match: XP_015868324.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g31920-like [Ziziphus jujuba]) HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9 Identity = 74/321 (23.05%), Postives = 118/321 (36.76%), Query Frame = 0 Query: 137 IGTCVRA--GQMGKAIGLLNQLFESQKTHVVPNHLTYNLLVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMAC-----------------------------------GKAKEKKMVAELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGAYQAAMFACS---KPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHETAVAQRLLDEMKKEGGRXXXXXGKGGRLVPNNGSYRGLIKSLAKAGAYEKCLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMK 418 + TC + G + A + Q+ E P+ YN ++ G + +W QA EML+ + PD TY LL AC GK KE + + Q++ K + ++ IAA A G W L L M+ E P + + AC+ D + T + LLR + L V + + + C + + Q+ M K+ N SY +I LA G + L V +EM KEGL PD ++Y + + ++ N+M+ Sbjct: 80 VATCALSDWGSLDYACSIFQQIDE-------PDTFLYNTMIRGHVKGMNWGQALLLYHEMLERGVEPDNFTYPALLKACSLLRFLEDGKQIHGHIFKLGLQDDVFVQNSLINMYGKCKETDLSCAVFEQMN-QKTIASWSAIIAAHASLGMWSECLILFGDMRSEGFWRPEESILVSVLSACTHLGALDLGKCTHA-SLLRNINGLNLIVKTSLIDMYVKCGCLEKGLCLFQK----MNKK----------------NQLSYSVIISGLAMHGHGREALEVFKEMLKEGLAPDDVVYVGVLSACGHAGLVDEGLQFFNRMQ 371 The following BLAST results are available for this feature:
BLAST of NO05G03200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03200 ID=NO05G03200|Name=NO05G03200|organism=Nannochloropsis oceanica|type=gene|length=1456bpback to top protein sequence of NO05G03200.1 >NO05G03200.1-protein ID=NO05G03200.1-protein|Name=NO05G03200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bpback to top Synonyms
Publications
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