NO05G03080, NO05G03080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G03080 vs. NCBI_GenBank
Match: EWM28083.1 (dna-directed rna polymerases and iii subunit rpabc3 [Nannochloropsis gaditana]) HSP 1 Score: 276.2 bits (705), Expect = 6.400e-71 Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGV-AGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTKTNRAS 158 MSHNLFDDTFVIT LNPHKKRFARVDRLVG+STLFEMDL+LDINSEIY V+Q DEIALML HTPYSDGK DPKEYQHDMSS LMDQY+YVTYGKVFKIES S G GG+KE KVAIMISFGGLLMKLSGDQKHVARISIDSPIYCF+RKTKT+R + Sbjct: 64 MSHNLFDDTFVITGLNPHKKRFARVDRLVGRSTLFEMDLILDINSEIYQVRQDDEIALMLAHTPYSDGKLDPKEYQHDMSSALMDQYEYVTYGKVFKIESAPSAGANVGGSKESKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFIRKTKTSRTT 221
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCI42344.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 130.2 bits (326), Expect = 5.700e-27 Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K+F +V R+VGK +E++L LDINSE++ +K+ D+ L T +GKPD Y +TL+D+YDY YGK+F+ E GGN VAI SFGGLLM+L G+Q+H+ + DS IYC +RK Sbjct: 37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCI42345.1 (unnamed protein product [Albugo candida]) HSP 1 Score: 130.2 bits (326), Expect = 5.700e-27 Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K+F +V R+VGK +E++L LDINSE++ +K+ D+ L T +GKPD Y +TL+D+YDY YGK+F+ E GGN VAI SFGGLLM+L G+Q+H+ + DS IYC +RK Sbjct: 1 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCA16787.1 (DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]) HSP 1 Score: 127.5 bits (319), Expect = 3.700e-26 Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K F +V R+VGK +E++L LDINSE++ +K+ D+ L T +GKPD Y +TL+D+YDY YGK+F E GGN VAI SFGGLLM+L G+Q+H+ + DS +YC +RK Sbjct: 84 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCA16788.1 (DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]) HSP 1 Score: 127.5 bits (319), Expect = 3.700e-26 Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K F +V R+VGK +E++L LDINSE++ +K+ D+ L T +GKPD Y +TL+D+YDY YGK+F E GGN VAI SFGGLLM+L G+Q+H+ + DS +YC +RK Sbjct: 72 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 212
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CCA16789.1 (DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]) HSP 1 Score: 127.5 bits (319), Expect = 3.700e-26 Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K F +V R+VGK +E++L LDINSE++ +K+ D+ L T +GKPD Y +TL+D+YDY YGK+F E GGN VAI SFGGLLM+L G+Q+H+ + DS +YC +RK Sbjct: 75 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEH------EGGN---NVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 215
BLAST of NO05G03080 vs. NCBI_GenBank
Match: CBN76194.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 125.9 bits (315), Expect = 1.100e-25 Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQH-DMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 MS LF+D F + LNP K+F RV+RL K ++MDLLLD N +IY VK+G+ + ++ T GKPD Y+ +L D+Y+YV +G+V++ + K+ KV + SFGGLLM+L+GDQ+HVA I +DS ++C +R+ Sbjct: 1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQ---------QKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_009531265.1 (hypothetical protein PHYSODRAFT_355025 [Phytophthora sojae] >EGZ13836.1 hypothetical protein PHYSODRAFT_355025 [Phytophthora sojae] >OWZ00202.1 hypothetical protein PHMEG_00028668 [Phytophthora megakarya] >POM60061.1 DNA-directed RNA polymerase I, II, and III subunit rpABC3 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 123.2 bits (308), Expect = 7.000e-25 Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K+F +V R+V K +E++L LDINSE+Y ++Q ++ L L T +GKPD + TL+D+YDY YGKVF+ + GGN VAI SFGGLLM L G+Q+H+ I D+ IYC +RK Sbjct: 1 MATELFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGMFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_024578344.1 (dnadirected rna polymerase i [Plasmopara halstedii] >CEG41975.1 dnadirected rna polymerase i [Plasmopara halstedii]) HSP 1 Score: 123.2 bits (308), Expect = 7.000e-25 Identity = 66/153 (43.14%), Postives = 93/153 (60.78%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRKTKT 154 M+ LF+D F + LNP K+F +V R+V K +E++L LDINSE+Y ++Q ++ L L T +GKPD + TL+D+YDY YGKVF+ + GGN VAI SFGGLLM L G+Q+H+ I D+ IYC +RK ++ Sbjct: 17 MATELFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRKQES 160
BLAST of NO05G03080 vs. NCBI_GenBank
Match: XP_002903317.1 (DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative [Phytophthora infestans T30-4] >XP_008893462.1 hypothetical protein PPTG_01825 [Phytophthora parasitica INRA-310] >EEY55741.1 DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative [Phytophthora infestans T30-4] >ETI44931.1 hypothetical protein F443_10376 [Phytophthora parasitica P1569] >ETK84932.1 hypothetical protein L915_10151 [Phytophthora parasitica] >ETL38350.1 hypothetical protein L916_10059 [Phytophthora parasitica] >ETL91481.1 hypothetical protein L917_09988 [Phytophthora parasitica] >ETM44778.1 hypothetical protein L914_10022 [Phytophthora parasitica] >ETN21699.1 hypothetical protein PPTG_01825 [Phytophthora parasitica INRA-310] >ETO73575.1 hypothetical protein F444_10488 [Phytophthora parasitica P1976] >ETP14758.1 hypothetical protein F441_10328 [Phytophthora parasitica CJ01A1] >ETP42828.1 hypothetical protein F442_10294 [Phytophthora parasitica P10297] >KUF90448.1 DNA-directed RNA polymerases I [Phytophthora nicotianae]) HSP 1 Score: 122.9 bits (307), Expect = 9.100e-25 Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 0 Query: 1 MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTVKQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIESVASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK 151 M+ LF+D F + LNP K+F +V R+V K +E++L LDINSE+Y ++Q ++ L L T +GKPD + TL+D+YDY YGKVF+ + GGN VAI SFGGLLM L G+Q+H+ I D+ IYC +RK Sbjct: 1 MATELFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTLDLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDH------EGGN---MVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141 The following BLAST results are available for this feature:
BLAST of NO05G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G03080 ID=NO05G03080|Name=NO05G03080|organism=Nannochloropsis oceanica|type=gene|length=2081bpback to top protein sequence of NO05G03080.1 >NO05G03080.1-protein ID=NO05G03080.1-protein|Name=NO05G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bpback to top protein sequence of NO05G03080.2 >NO05G03080.2-protein ID=NO05G03080.2-protein|Name=NO05G03080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=122bpback to top Synonyms
Publications
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