NO05G03030, NO05G03030 (gene) Nannochloropsis oceanica

Overview
NameNO05G03030
Unique NameNO05G03030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1010
Alignment locationchr5:788413..789422 -

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Properties
Property NameValue
DescriptionE3 ubiquitin-protein ligase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:788413..789422 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016874ligase activity
Homology
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BLAST of NO05G03030 vs. NCBI_GenBank
Match: EWM28114.1 (e3 ubiquitin-protein ligase [Nannochloropsis gaditana])

HSP 1 Score: 269.6 bits (688), Expect = 1.100e-68
Identity = 175/296 (59.12%), Postives = 202/296 (68.24%), Query Frame = 0 
Query:    4 RRPPTTGETLVPRGFEKVAHPLFLLLRGPPPPDKRPLKMNFAPFEAGDGA-LLSAVTLGAS--PP---QEVAQQNQPQTPQLHTAYLK---TKLLTHKTIGSNITAGENEDIDLSCAVCLEEHTVPVVVVTSDCTHIFCKKCITCWLSINHSSSHDQGPSCPLCKRPVTWLLSLSSSSPPTPPFRFVLLAVGPDAELLERQPWPSPALLQVSRQKLLDLFEA----RERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYEPGAGVQQGRPLTESLQDELRRVNAEITLLKTK 287
            RR P  GETLVPRGFE+VAHPLFL+ R PPP +KRP KM+FAPFEA D A LL A   GAS  PP   QE A  +Q  T Q +    K   ++    +  G +    + ED+D +CAVCLEE+  PVVV T+ CTH FCKKCITCWLS+   S+  Q PSCPLCKRPVTWLLSLS+SSPP PPFR+VLLAVGPD ELLERQPWPSPALLQ SRQK LDLFEA       XXXXXXXXXXXXXXXXX                YEPG  + +G  ++ESL++EL RVN EI  L+ +
Sbjct:   13 RRRPAPGETLVPRGFEQVAHPLFLVRREPPPAEKRPTKMSFAPFEAADEALLLRAPAEGASQRPPERHQEDAISHQGATSQCYGVSCKSIGSQRGIKRDTGPSDREEKAEDVDTTCAVCLEEYEDPVVVATAHCTHTFCKKCITCWLSLTRPSA--QCPSCPLCKRPVTWLLSLSASSPPVPPFRYVLLAVGPDMELLERQPWPSPALLQASRQKQLDLFEAXXXXXXXXXXXXXXXXXXXXXXXXKRSNVDAGAGRGVKRRYEPGTNLGRGGNMSESLREELHRVNREIEGLRRR 306
The following BLAST results are available for this feature:
BLAST of NO05G03030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28114.11.100e-6859.12e3 ubiquitin-protein ligase [Nannochloropsis gadit... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003562NSK003562Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03030.1NO05G03030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584591gene_3110Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g2gene2467Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03030.1NO05G03030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03030 ID=NO05G03030|Name=NO05G03030|organism=Nannochloropsis oceanica|type=gene|length=1010bp
ATGCGAATGCGCCGACCCCCGACAACTGGGGAGACGCTTGTGCCTCGTGG
TTTTGAAAAGgtaggtggtggagcgtgtatctctttcactgttcttgtgc
ctccatccctcacgacctcctcacccttccaacaccctcgatccgagatg
ggttcccttcttagatttaccgattttaaaccctcttcttcctcttccag
GTGGCCCATCCCCTCTTTCTCCTCCTGCGTGGCCCTCCCCCACCAGACAA
GCGCCCTCTCAAGATGAATTTTGCTCCTTTTGAAGCAGGAGATGGAGCAT
TGCTTTCCGCAGTAACTCTGGGAGCATCGCCACCACAGGAAGTCGCCCAG
CAGAACCAACCTCAAACTCCACAACTCCACACAGCATATCTTAAGACCAA
ACTCTTAACCCACAAGACTATTGGTTCGAATATAACTGCCGGGGAGAATG
AGGATATCGACCTCTCATGCGCTGTGTGCCTGGAAGAACACACCGTGCCC
GTTGTCGTTGTCACCTCCGATTGCACCCACATATTCTGCAAGAAGTGCAT
CACCTGCTGGTTGTCCATTAACCATTCATCCTCGCATGACCAAGGACCGT
CCTGCCCGCTCTGCAAACGCCCGGTCACCTGGCTTCTCAGCCTCTCTTCC
TCCTCCCCTCCAACTCCTCCGTTTCGATTCGTTCTCCTAGCGGTAGGTCC
CGATGCCGAGCTCCTAGAGCGACAGCCCTGGCCGTCACCGGCGCTGCTAC
AGGTTTCTCGACAAAAGCTATTGGATTTGTTTGAGGCACGGGAGCGACGG
CACCAGCAGCGGTGCCAGCAGCAGCAGCAACAGCAGCAGCAAGTAAAGGA
GTCAAAAGGCGAAGACGCAAGCAAGAAAAGTGGAAAGAGGAGAGGTTACG
AGCCAGGGGCGGGCGTCCAGCAAGGTAGGCCCTTGACTGAATCGCTCCAA
GATGAATTGCGGCGTGTGAACGCAGAAATTACGCTCCTCAAAACCAAAAA
GAAGAGATAA
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protein sequence of NO05G03030.1

>NO05G03030.1-protein ID=NO05G03030.1-protein|Name=NO05G03030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MRMRRPPTTGETLVPRGFEKVAHPLFLLLRGPPPPDKRPLKMNFAPFEAG
DGALLSAVTLGASPPQEVAQQNQPQTPQLHTAYLKTKLLTHKTIGSNITA
GENEDIDLSCAVCLEEHTVPVVVVTSDCTHIFCKKCITCWLSINHSSSHD
QGPSCPLCKRPVTWLLSLSSSSPPTPPFRFVLLAVGPDAELLERQPWPSP
ALLQVSRQKLLDLFEARERRHQQRCQQQQQQQQQVKESKGEDASKKSGKR
RGYEPGAGVQQGRPLTESLQDELRRVNAEITLLKTKKKR*
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Synonyms
Publications