NO05G03010, NO05G03010 (gene) Nannochloropsis oceanica

Overview
NameNO05G03010
Unique NameNO05G03010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1222
Alignment locationchr5:784889..786110 -

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Properties
Property NameValue
DescriptionMpv17-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:784889..786110 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of NO05G03010 vs. NCBI_GenBank
Match: EWM28134.1 (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 455.3 bits (1170), Expect = 1.400e-124
Identity = 252/289 (87.20%), Postives = 265/289 (91.70%), Query Frame = 0
Query:    1 MFKVLTATLAVGATAFMPPTRPAIKAVRGPSMSMMTGATTGKIDPMFDGASPMYQDILRRRPETGHGGGIIXXXXXXXXXXXXXXXXXXXXXXXXXXGGDNPLVVLWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNVAPEAAPAVSKK 290
            MFK+LTATLAVGATAFM PTRPAIKAVRGPSMSMMTGAT GKID MF+GASP YQD+LRRRPETGHGG   XXXXXXXXXXXXXXXXXXXXXXXXXXGG+NPL +LWKGYNQLLKDQPLLTKALTSFVGFS GDLLAQKFIDK + +DLKRLLKLA FG LVHGPTGHYFYGFLDGKMPGTSA TVASKVAIDQL+WNPIFGTMFFGWLGL EGQ+LEGIK RI+KDL ASVKGSWTVWPIAHAINFRFIPNSQRLLYIN+VQIGYN FLS LAN+N APE AP  + K
Sbjct:    1 MFKLLTATLAVGATAFMAPTRPAIKAVRGPSMSMMTGATMGKIDAMFEGASPFYQDVLRRRPETGHGG--XXXXXXXXXXXXXXXXXXXXXXXXXXXGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGK 287          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: CBJ27540.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 256.9 bits (655), Expect = 7.400e-65
Identity = 117/174 (67.24%), Postives = 140/174 (80.46%), Query Frame = 0
Query:  103 LVVLWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANK 277
            L V+W  Y  LL  QPLLTK+LTS  GF+ GDLLAQKFIDKK+ IDL RLLKLASFG L+HG +GH+FY FLD K+PGT+A TVA KV IDQ++WNPIFG MFFG++G ++G    GI  +I+ +L  SVKGSWTVWP+AHAINFR IP SQRLLYINT+QI YNCFLS++A +
Sbjct:  123 LGVIWAAYMSLLASQPLLTKSLTSMTGFALGDLLAQKFIDKKEEIDLPRLLKLASFGALIHGSSGHFFYNFLDSKIPGTAALTVAKKVFIDQVLWNPIFGCMFFGYMGAVDGMGPSGISEKIKNNLWTSVKGSWTVWPVAHAINFRMIPTSQRLLYINTIQIFYNCFLSVIAQR 296          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: CBN79011.1 (peroxisomal membrane protein-related [Ectocarpus siliculosus])

HSP 1 Score: 244.6 bits (623), Expect = 3.800e-61
Identity = 111/171 (64.91%), Postives = 131/171 (76.61%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANK 277
            +W  YN+ L  QPLL KA+TSF GF+ GD+LAQKFI  +D  D  R L+L +FG LVHGPTGHYFYG LD K+PGT   TVASKVAIDQ IWNPIFG MFF +LGL EG+ ++ I+ +I+ DL  +V GSWTVW  AH INF+F+P SQRLLYINT+QIGYN FLS L NK
Sbjct:    4 IWAAYNKALAAQPLLVKAMTSFTGFTVGDILAQKFISPEDDYDFMRTLRLGTFGALVHGPTGHYFYGMLDAKLPGTKPMTVASKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: XP_002183376.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45076.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 240.0 bits (611), Expect = 9.400e-60
Identity = 114/177 (64.41%), Postives = 133/177 (75.14%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDT-IDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNVAPE 282
            LW  YN +L  QPLLTKALTS  GFS GD+LAQ FI++ D   D  R  ++ SFGFL+HG TGHYFYGFLD K+PGT+  TVASKVAIDQ IWNPIFG MFFG+L LMEG+ L+   T+I+ DL  +V GSW VW  AH INF F+P +QRLLYINT+QIGYN FLS L NK+V  E
Sbjct:    4 LWARYNSMLDAQPLLTKALTSMTGFSLGDILAQCFIEEGDKGYDPMRTFRMGSFGFLLHGTTGHYFYGFLDSKLPGTAPMTVASKVAIDQTIWNPIFGCMFFGYLNLMEGKSLDDYTTKIKTDLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYNVFLSFLGNKSVEEE 180          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: GAX25226.1 (hypothetical protein FisN_5Lh310 [Fistulifera solaris] >GAX16933.1 hypothetical protein FisN_5Hh310 [Fistulifera solaris])

HSP 1 Score: 240.0 bits (611), Expect = 9.400e-60
Identity = 112/174 (64.37%), Postives = 132/174 (75.86%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKD-TIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNV 279
            LW  YN++L  QPLLTKALTS  GF+ GD+LAQKF++  D   DL R ++L SFGFL+HG TGHYFYGFLDGK+PGT+  TVA+KVAIDQ IWNPIFG MFFG+L  +EG+  E    +I+ DL  +V GSW VW  AH INF FIP SQRLLYIN++QIGYN FLS L NK V
Sbjct:    4 LWARYNKMLDAQPLLTKALTSLTGFTLGDVLAQKFVEPTDKPYDLMRTVRLGSFGFLIHGTTGHYFYGFLDGKLPGTAPMTVATKVAIDQTIWNPIFGLMFFGYLNFVEGKSFEDYTNKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNVFLSFLGNKKV 177          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: NP_001090480.1 (uncharacterized protein LOC779393 [Xenopus laevis] >AAI23161.1 MGC154358 protein [Xenopus laevis])

HSP 1 Score: 235.7 bits (600), Expect = 1.800e-58
Identity = 109/175 (62.29%), Postives = 134/175 (76.57%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFI--DKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNV 279
            LW  YN  L+  PLL KA+TS  GF+ GD+LAQKF+  DK+   DL R ++L SFGFLVHGPTGHYFY +LD ++PGT+  TVA+KVAIDQL+WNP FG MFF +LGL EG+    I+T+I+ DL  +V GSWTVW  AH +NFRF+P+SQRLLYIN++QIGYN FLS L NK V
Sbjct:    5 LWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNKKV 179          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: XP_009040828.1 (hypothetical protein AURANDRAFT_15607, partial [Aureococcus anophagefferens] >EGB04441.1 hypothetical protein AURANDRAFT_15607, partial [Aureococcus anophagefferens])

HSP 1 Score: 235.7 bits (600), Expect = 1.800e-58
Identity = 105/168 (62.50%), Postives = 129/168 (76.79%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSIL 274
            +W  Y   L+  PLL K LTS +GF  GD+LAQ FI+K D  D+ R ++ +SFG LVHG T H+FYG LDGK+PGT A  VASKV IDQ++WNPIFG MFFG++G+ EG  + G  T+I+ DL+  V GSWTVWPIAHAINF+FIPNSQR+LYINT+QI YNCFLSI+
Sbjct:    1 VWAAYEAALEKDPLLIKGLTSMIGFFLGDVLAQCFIEKSDKYDIWRTIRFSSFGLLVHGTTSHWFYGKLDGKIPGTGAGAVASKVGIDQVLWNPIFGIMFFGYMGIFEGSGVGGTITKIKNDLLTQVTGSWTVWPIAHAINFKFIPNSQRVLYINTIQIFYNCFLSII 168          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: EWM26132.1 (mpv17-like protein [Nannochloropsis gaditana] >EWM26133.1 mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 1.100e-57
Identity = 108/175 (61.71%), Postives = 134/175 (76.57%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFI--DKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNV 279
            LW  YN  L+  PLL KALTS  GF+ GD+LAQKF+  D++   DL R ++L SFGFLVHGPTGH+FYG+LD ++PGT+  TVA+KVAIDQL+WNP FG MFF +LGL EG+    I+ +I+ DL  +V GSWTVW  AH INFRF+P++QRLLYIN++QIGYN FLS L NK V
Sbjct:    5 LWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKGYDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNKKV 179          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: OEU20060.1 (hypothetical protein FRACYDRAFT_167937 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 224.6 bits (571), Expect = 4.100e-55
Identity = 105/180 (58.33%), Postives = 124/180 (68.89%), Query Frame = 0
Query:  106 LWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKD-TIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNVAPEAAP 285
            LW  YN+LL  QPLLTK  TS  GF+ GD+LAQKF++  D   D+ R ++L SFGFL HG TGHYFYG LD K+PGT   TVA+KV IDQ IWNPIFG  FFG+L  +EG+       ++  DL  +V GSW VW  AH INF F+P +QRLLYINT+QIGYN FLS L NK V  E  P
Sbjct:    4 LWARYNKLLDAQPLLTKCFTSLTGFTVGDILAQKFVEPSDKPYDVMRTVRLGSFGFLFHGSTGHYFYGLLDSKLPGTKPVTVATKVIIDQTIWNPIFGCAFFGYLNAVEGKSWNDYTKKLNADLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYNIFLSFLGNKAVDEEKPP 183          
BLAST of NO05G03010 vs. NCBI_GenBank
Match: XP_005776476.1 (putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516] >EOD24047.1 putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 224.2 bits (570), Expect = 5.300e-55
Identity = 100/177 (56.50%), Postives = 134/177 (75.71%), Query Frame = 0
Query:  101 NPLVVLWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKN 278
            NP    WK YN+LL ++PLL KA TSF+GF+ GD+LAQ FI K+D  D  RL +LASFGFLVHG + H+FYG LD  +PG  A  V +KV IDQ++WNPI G MFF ++  +E + L+ +  + + +L+  V GSW VWP+AHAINFRFIP+SQR+LYIN++QIGYNCFLS+++N++
Sbjct:   94 NPFASAWKKYNELLDEKPLLMKAFTSFLGFAIGDILAQIFIQKQD-FDWYRLFRLASFGFLVHGTSSHWFYGMLDSAIPGKGAQPVFTKVFIDQVLWNPILGIMFFSYVACLEWKGLQYVIDKTRNELLRQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNRD 269          
The following BLAST results are available for this feature:
BLAST of NO05G03010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28134.11.400e-12487.20mpv17-like protein [Nannochloropsis gaditana][more]
CBJ27540.17.400e-6567.24conserved unknown protein [Ectocarpus siliculosus][more]
CBN79011.13.800e-6164.91peroxisomal membrane protein-related [Ectocarpus s... [more]
XP_002183376.19.400e-6064.41predicted protein [Phaeodactylum tricornutum CCAP ... [more]
GAX25226.19.400e-6064.37hypothetical protein FisN_5Lh310 [Fistulifera sola... [more]
NP_001090480.11.800e-5862.29uncharacterized protein LOC779393 [Xenopus laevis]... [more]
XP_009040828.11.800e-5862.50hypothetical protein AURANDRAFT_15607, partial [Au... [more]
EWM26132.11.100e-5761.71mpv17-like protein [Nannochloropsis gaditana] >EWM... [more]
OEU20060.14.100e-5558.33hypothetical protein FRACYDRAFT_167937 [Fragilario... [more]
XP_005776476.15.300e-5556.50putative peroxisomal membrane protein [Emiliania h... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003565NSK003565Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G03010.1NO05G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625233gene_3108Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g4gene2465Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G03010.1NO05G03010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G03010 ID=NO05G03010|Name=NO05G03010|organism=Nannochloropsis oceanica|type=gene|length=1222bp
ATGTTCAAGGTCCTCACCGCCACGCTGGCGGTCGGTGCCACGGCGTTCAT
GCCTCCTACCCGCCCTGCCATCAAAGCCGgtaagtgatggatctgttgtt
tatgcgtattccgagtcgaaagacggaagaatttccgccgcggccttcgt
gacacccggcgaggactcccgaacctcaaggtgaacctttgtcaagtgtg
tcgtgtgtcttgagtagacgcaaacctgcgtgagagataaaggcgcaacc
gtggcacctctggatgtattttgtgccggggcaatggtcgaaaatgaggt
cggtcgtccaggtcacgtggtcacaccctatgacaagcttcgggaagccc
gacgtgctcggacgaaacggaggggaaaccctatcccttcttacctctca
cccctccctctgtccttcccttttgtcacagTCCGCGGCCCATCCATGTC
CATGATGACTGGTGCGACAACCGGGAAGATCGACCCCATGTTCGACGGCG
CCAGCCCGATGTATCAAGACATTCTCCGTCGCCGCCCCGAGACAGGCCAC
GGTGGTGGGATCATCATCGGCGGCGGTGGTGATGGGGAAGGCACCGGCGG
TGGTGGTGGAGGCGGAGGGGGTGGAAGCGGCGATGGGAACAAAGGCGGAG
ACAATCCCTTGGTGGTGCTGTGGAAAGGCTACAACCAGCTGCTGAAGGAT
CAGCCTTTGCTTACCAAAGCCTTGACCTCATTTGTGGGGTTTTCGGCGGG
TGATTTGCTGGCGCAAAAGTTCATTGACAAAAAGGACACGATTGACTTGA
AGCGCCTGTTGAAGCTTGCGTCGTTTGGGTTCTTGGTTCATGGTCCCACT
GGCCACTATTTCTATGGCTTCTTGGATGGGAAGATGCCTGGCACCAGCGC
TGCAACAGTGGCGTCCAAGGTGGCGATTGACCAGTTGATCTGGAACCCTA
TCTTCGGGACGATGTTTTTTGGCTGGTTGGGGTTGATGGAGGGACAGGAT
CTGGAAGGGATCAAGACCCGAATTCAGAAGGATTTGATGGCCTCGGTGAA
AGGCTCCTGGACTGTCTGGCCAATTGCGCACGCGATTAACTTCCGTTTCA
TTCCCAACTCCCAGCGTTTGTTGTACATCAACACGGTTCAGATTGGATAC
AACTGCTTCTTGTCCATCTTAGCGAACAAGAACGTGGCGCCTGAGGCTGC
CCCCGCCGTTTCTAAGAAGTAA
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protein sequence of NO05G03010.1

>NO05G03010.1-protein ID=NO05G03010.1-protein|Name=NO05G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MFKVLTATLAVGATAFMPPTRPAIKAVRGPSMSMMTGATTGKIDPMFDGA
SPMYQDILRRRPETGHGGGIIIGGGGDGEGTGGGGGGGGGGSGDGNKGGD
NPLVVLWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLK
RLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPI
FGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFI
PNSQRLLYINTVQIGYNCFLSILANKNVAPEAAPAVSKK*
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Synonyms
Publications