NO05G02970, NO05G02970 (gene) Nannochloropsis oceanica

Overview
NameNO05G02970
Unique NameNO05G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1786
Alignment locationchr5:776800..778585 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:776800..778585 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003568NSK003568Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02970.1NO05G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584579gene_3104Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02970.1NO05G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02970 ID=NO05G02970|Name=NO05G02970|organism=Nannochloropsis oceanica|type=gene|length=1786bp
AGGGCGGTCTTGCTTCTTCTCAAACCCACATGCCTCACCGAACATACACA
GGCTTCTTTCAGTCCCGACCTTGCCTGCCTGCCTTCGGCCCCAGAATCCT
CTAGAGCTCGAGATAGATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCC
ATGGCCTCGTACAACGCGGCGCCAGGAAGCAGCAACGGGAACTTTATCCG
CTTCGAGCTGCAGAACCCCGCAAGCTTCAGGCAGATCAGTCGGTATATGA
GCAACTAGAGGAGGAAGGGTGGGGACTGGTACCAGCAGTGGTACCGGTGG
GGTATGCAACTGGGAAAGGAGATGATAATTATCATGATGATGACAGTGGT
GGTGGTTATAGAGTCAAACGCAAGCGATCCAATAACAACCGTAGAGACAA
GGAAGGATGCGAGGACGACGACGAGGAGGAGGACGACGAGGACAGAAGCA
TGTTAAGCAAGGCGGGCATCCGCGGTGGTCGACCTGGAAGTCTAACGACT
TGGGAGCTGAACCACTATAGGCGACGGCATTTCCTGATGCCACAGGGAGC
GTGGCCTATCCTGCCTTCTGCATCGCCAACGCCGCCACCAGTGATCGAGT
TACCGCAAGGAAACGGCTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCT
GACAACCTAGGTATTGACGGCGTGCAGCACTATATCCCACGTATCCGGGT
CTCGGGCGGTGCGCGGAGACAGAAAAATAAAAGAGCACTCGAGGCTGCAG
AAACGCAGTTGGAATGGCTTCCGTTTGAGAACTTGGCGATTCAGACGGAA
AAGAGGGAGGACGACAACTACCCGATACCTTCTCCTGTACTTGTCCGTGC
ATTGGATGCGGCGATTGTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATC
AAATGGAAGAAGAGGACGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAG
GACAAGAATGAGAATGAGGAGGAAGATCGAGAACGGAAGACGAAGAGCAC
AGTTGAGGTGCGACTCTATGATTTGCTTGAGTCAGCGTTGGGCACGCTGG
AGGAGGACAAAGACGAGGGTGGGGGGGAGGACGACTACAACGACGGCGAA
GACGGCACCAAAAACCTGATCCGAAAACGAATGGAAGCTGTGCACGTCCT
GCGCCGATGCTTAGGGCGAGAGACTGAGCGGTTGATAGACGGGCTCCTGG
GTCATGTATTGGCGTGTTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAG
GAAAGGTATCTAGCCTGGTTACGGCGACAGCGGGCCTGCAACTTGATCGA
CCCCCGTAATAATGTTTCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGG
GTTTGATTTTAGGGGACTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGG
ATGCAGGTGGATATGGCGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAA
GGCCGAGAAGGTAACGTACATGGAAGCGAAGAGGCAGATGAAAGAAAAAA
TGAAGTATTCAAAAAGTGGGAGACGGAAATTGAACGAACATGGTCGGAAG
TTGCGAACGAGGTTGGATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGA
GAAAGCGAGGGAGGAAGAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCG
ATCCGGGGACGCTCAGCCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGG
GCCGGGAAGGGGGCATTGCCACCAGAGGAAGGCTTGTAAAGGGATGGGAT
AAATGAATTCTTACTTTATGACGAATATACCGCTGT
back to top

protein sequence of NO05G02970.1

>NO05G02970.1-protein ID=NO05G02970.1-protein|Name=NO05G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MELKEVARAAIHGLVQRGARKQQRELYPLRAAEPRKLQADQSVYEQLEEE
GWGLVPAVVPVGYATGKGDDNYHDDDSGGGYRVKRKRSNNNRRDKEGCED
DDEEEDDEDRSMLSKAGIRGGRPGSLTTWELNHYRRRHFLMPQGAWPILP
SASPTPPPVIELPQGNGYCRPPPPEALPDNLGIDGVQHYIPRIRVSGGAR
RQKNKRALEAAETQLEWLPFENLAIQTEKREDDNYPIPSPVLVRALDAAI
VRQLVGVVQAHQMEEEDEFGDKEEDEKEDKNENEEEDRERKTKSTVEVRL
YDLLESALGTLEEDKDEGGGEDDYNDGEDGTKNLIRKRMEAVHVLRRCLG
RETERLIDGLLGHVLACWSERSQAQRSEERYLAWLRRQRACNLIDPRNNV
SLEDRVGFAGQGLILGDWHDVLGVVEERMQVDMAAAKGREEGRRKAEKVT
YMEAKRQMKEKMKYSKSGRRKLNEHGRKLRTRLDENEEQEELEEEKAREE
EGEVNLLRPAFDPGTLSRSRARLERLFWAGKGALPPEEGL*
back to top
Synonyms
Publications