NO05G02960, NO05G02960 (gene) Nannochloropsis oceanica

Overview
NameNO05G02960
Unique NameNO05G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1353
Alignment locationchr5:773648..775000 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:773648..775000 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: EWM28106.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 9.800e-48
Identity = 188/311 (60.45%), Postives = 200/311 (64.31%), Query Frame = 0 
Query:    1 MMMTGPLGAPHPHHPLSLPPRGG-----VGVGIXXXXNTPGXXXXXXXXXXXXXXXSAYGGGGAPYWMMGAHTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSHFPYQPGPLPATMTTMIGGMQHHQYMPYGAVGGHPYMYXQPXFGAAXAQGGQVPPSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPLEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            MM+ GPLG  H  HP +LP RGG          XXXX    XXXXXXXXXXXXXXX      GAPYWM+G H                                  +HFP+Q GP+P  M     G+ HHQY+PYGAV   PY+Y  P FG    QG      G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXKPLEGP GANLFIYHLPHDLTDADLATAFNPFGTV+SAKVYVDKN+GESKGFGFVSYD+P AADAAIKAMNGFQIGTKRLKVQHKRI
Sbjct:  245 MMVPGPLG--HSLHPPNLPLRGGSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSGAPYWMLGPH----------------------------GQPQASAHFPFQAGPVPMGML----GLPHHQYLPYGAVRAPPYLYYPPYFGPGGPQG-----HGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRVNTAVGAPHGAGHAGAFAXXXXXXXXXKPLEGPAGANLFIYHLPHDLTDADLATAFNPFGTVVSAKVYVDKNSGESKGFGFVSYDSPLAADAAIKAMNGFQIGTKRLKVQHKRI 516
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BLAST of NO05G02960 vs. NCBI_GenBank
Match: GAY00429.1 (Hypothetical protein PINS_008280 [Pythium insidiosum])

HSP 1 Score: 158.3 bits (399), Expect = 5.600e-35
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGP GANLFIYHLPHDLTDADLATAF PFGTVISAKVY+DK TGESKGFGFVSYDAP AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  323 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDAPEAADAAIASMNGFQIGSKRLKVQHKRV 407
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: GAY00425.1 (Hypothetical protein PINS_008281 [Pythium insidiosum])

HSP 1 Score: 158.3 bits (399), Expect = 5.600e-35
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGP GANLFIYHLPHDLTDADLATAF PFGTVISAKVY+DK TGESKGFGFVSYDAP AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  836 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDAPEAADAAIASMNGFQIGSKRLKVQHKRV 920
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: CCA23638.1 (CUGBP and ETR3like factor putative [Albugo laibachii Nc14])

HSP 1 Score: 156.4 bits (394), Expect = 2.100e-34
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGPPGANLFIYHLPHDLTDADLATAF PFGTVISAKVY+DK TGESKGFGFVSYDA  AAD AI +MNGFQIG+KRLKVQHKRI
Sbjct:  398 LEGPPGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKLTGESKGFGFVSYDAAEAADNAIASMNGFQIGSKRLKVQHKRI 482
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: XP_008874599.1 (hypothetical protein H310_10113 [Aphanomyces invadans] >ETV96822.1 hypothetical protein H310_10113 [Aphanomyces invadans])

HSP 1 Score: 156.4 bits (394), Expect = 2.100e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            +EGP GANLFIYHLPHDLTDADLATAF PFGTVISAKVY+DKNTGESKGFGFVSYD+  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  334 IEGPVGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKRV 418
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: CCI11297.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 156.4 bits (394), Expect = 2.100e-34
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGPPGANLFIYHLPHDLTDADLATAF PFGTVISAKVY+DK TGESKGFGFVSYDA  AAD AI +MNGFQIG+KRLKVQHKRI
Sbjct:  398 LEGPPGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKLTGESKGFGFVSYDASEAADNAIASMNGFQIGSKRLKVQHKRI 482
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: XP_009841215.1 (hypothetical protein H257_14965 [Aphanomyces astaci] >ETV69358.1 hypothetical protein H257_14965 [Aphanomyces astaci])

HSP 1 Score: 156.0 bits (393), Expect = 2.800e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            +EGP GANLFIYHLPHDLTDADLATAF PFGTVISAKVY+DKNTGESKGFGFVSYD+  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  333 VEGPVGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKRV 417
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: XP_008609690.1 (hypothetical protein SDRG_05737 [Saprolegnia diclina VS20] >EQC36909.1 hypothetical protein SDRG_05737 [Saprolegnia diclina VS20])

HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGP GANLFIYHLPHDLTDADLATAF PFGTVISAKV++DKNTGESKGFGFVSYD+  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  334 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKRV 418
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: OQR99335.1 (CUG-BP- and ETR-3-like factor [Achlya hypogyna])

HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGP GANLFIYHLPHDLTDADLATAF PFGTVISAKV++DKNTGESKGFGFVSYD+  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  382 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVAAADAAIASMNGFQIGSKRLKVQHKRV 466
[Close]
BLAST of NO05G02960 vs. NCBI_GenBank
Match: OQS06212.1 (CUG-BP- and ETR-3-like factor [Thraustotheca clavata])

HSP 1 Score: 155.6 bits (392), Expect = 3.600e-34
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0 
Query:  222 LEGPPGANLFIYHLPHDLTDADLATAFNPFGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLKVQHKRI 307
            LEGP GANLFIYHLPHDLTDADLATAF PFGTVISAKV++DKNTGESKGFGFVSYD+  AADAAI +MNGFQIG+KRLKVQHKR+
Sbjct:  326 LEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKRV 410
The following BLAST results are available for this feature:
BLAST of NO05G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28106.19.800e-4860.45rna binding protein [Nannochloropsis gaditana][more]
GAY00429.15.600e-3589.41Hypothetical protein PINS_008280 [Pythium insidios... [more]
GAY00425.15.600e-3589.41Hypothetical protein PINS_008281 [Pythium insidios... [more]
CCA23638.12.100e-3489.41CUGBP and ETR3like factor putative [Albugo laibach... [more]
XP_008874599.12.100e-3487.06hypothetical protein H310_10113 [Aphanomyces invad... [more]
CCI11297.12.100e-3489.41unnamed protein product [Albugo candida][more]
XP_009841215.12.800e-3487.06hypothetical protein H257_14965 [Aphanomyces astac... [more]
XP_008609690.13.600e-3487.06hypothetical protein SDRG_05737 [Saprolegnia dicli... [more]
OQR99335.13.600e-3487.06CUG-BP- and ETR-3-like factor [Achlya hypogyna][more]
OQS06212.13.600e-3487.06CUG-BP- and ETR-3-like factor [Thraustotheca clava... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02960.1NO05G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02960.1NO05G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02960 ID=NO05G02960|Name=NO05G02960|organism=Nannochloropsis oceanica|type=gene|length=1353bp
ATGATGATGACTGGACCGTTGGGTGCGCCCCACCCTCACCATCCTCTTTC
GTTGCCACCAAGAGGAGGGGTAGGAGTAGGAATAGGAAGTGGATTAAATA
CACCAGGTAGGGGGGGCGTGAAGGGAGGAAGTGAAGCAGGGAGTGATGGC
TCGTCGGCGTATGGAGGGGGAGGAGCACCGTACTGGATGATGGGCGCACA
TACACATGGGGCTCATGGACATCAACAGCAGCAGTCACAGCAGCAGTCAC
AGCAGCAGTCACAGCAGCAGCACCAAGCAAGCACACACGGCCATGGGCCT
CCATCGCATTTCCCTTACCAGCCGGGGCCCTTGCCAGCAACCATGACGAC
GATGATAGGGGGAATGCAACACCACCAGTACATGCCTTATGGTGCCGTAG
GTGGACACCCTTACATGTATTATCAGCCTTATTTTGGCGCGGCAGGGGCA
CAGGGAGGGCAAGTACCACCATCAGGGGGGGCAGGAGCAGGAGCAGCCGG
GGGGGTGGGATCGCCGTTTGTGTATGGAAGGGGAGGAGGGAGGGAAGGAG
GACGAGGAATACCTTCGGAGGCAGGGCTACCGTCTGGGGGGGGACATTCG
AGTCCTTATTCTTCGTCGTCAAGAGAAGGGAGTAGTGGAGGAGGGGGGGC
AGGGTCGAAGCCATTGGAAGGGCCTCCGGGTGCAAATTTGTTTATTTACC
ATCTGCCTCATGATTTGACCGACGCTGACTTGGCGACTGCATTTAATCCG
TTCGGAACTGTGATCAGTGCGAAGGTGTATGTGGATAAGAACACGGGGGA
GAGTAAGGGATTTGGGTTTGTGTCGTATGACGCCCCCCCTGCTGCGGATG
CTGCCATCAAGGCCATGAACGGCTTTCAGATCGGGACGAAGCGCCTCAAA
GTCCAACACAAGCGCATTGGTGGTGGAGGAGAGGGAGGAGGAGGGAATCA
GGCAGGTCCCACCACCCCTTCCTCTATCTCGTCCTCGATCTCCTACTTGA
CGCAGCGTGGGCACAGCAGTAGTCATGGAGGGGGAGGAGAGGAGGGAGGT
GTTGACAGCAGCAACAGCAGCAACAGCACTCATCATCACTCGAGCCAACC
CCCTTCCACCGCTTGTCGCACCCCATCCTCCTCTTCCTCTCCCCCCTCTT
CGGAACCAGCATGCAAGAAGGAAGCGGCTGCTGCAGGGGAGAGCAGTAGT
AGCAGTAAAGGAACGTGGGGTGCGGGAGGGAAAGGTGGTAAGTCGCCAGG
ATCGGCTGCATCATCGCCGTCAAAGCGGAGAGAAGGGATAGGAGGAAGGG
AGAAGGCGGGAGAAGATTCGCTGGAACAGGGGGTTGAGGGGCTGAAGCTA
TGA
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protein sequence of NO05G02960.1

>NO05G02960.1-protein ID=NO05G02960.1-protein|Name=NO05G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MMMTGPLGAPHPHHPLSLPPRGGVGVGIGSGLNTPGRGGVKGGSEAGSDG
SSAYGGGGAPYWMMGAHTHGAHGHQQQQSQQQSQQQSQQQHQASTHGHGP
PSHFPYQPGPLPATMTTMIGGMQHHQYMPYGAVGGHPYMYYQPYFGAAGA
QGGQVPPSGGAGAGAAGGVGSPFVYGRGGGREGGRGIPSEAGLPSGGGHS
SPYSSSSREGSSGGGGAGSKPLEGPPGANLFIYHLPHDLTDADLATAFNP
FGTVISAKVYVDKNTGESKGFGFVSYDAPPAADAAIKAMNGFQIGTKRLK
VQHKRIGGGGEGGGGNQAGPTTPSSISSSISYLTQRGHSSSHGGGGEEGG
VDSSNSSNSTHHHSSQPPSTACRTPSSSSSPPSSEPACKKEAAAAGESSS
SSKGTWGAGGKGGKSPGSAASSPSKRREGIGGREKAGEDSLEQGVEGLKL
*
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Synonyms
Publications