NO05G02950, NO05G02950 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO05G02950 vs. NCBI_GenBank
Match: EWM28106.1 (rna binding protein [Nannochloropsis gaditana]) HSP 1 Score: 293.1 bits (749), Expect = 7.400e-76 Identity = 144/199 (72.36%), Postives = 175/199 (87.94%), Query Frame = 0 Query: 8 QSATTDPT--SPSAKTGPTKDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPADMHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTPEGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKRSTDGG 205 Q+ATT+ T + A G TKD DA+KLFVGQIPKD+ E+ALRP FAE+GPIFELTVIRDK++G HRGCAFLTYCTK AA AAS ALHN+ +LP+AQNALQVRPAD+H ERENKLFVGMLPK VD+ ++E LFAP+GKIKE+HIIR+ EGEGKGCAFLKF+++SSA++AIE LNERQ VEG++RP+VV+FA++KRS +GG Sbjct: 11 QAATTEQTRATAGAPAGLTKDGDAIKLFVGQIPKDMGEDALRPFFAEYGPIFELTVIRDKTSGMHRGCAFLTYCTKEAAQAASLALHNKLKLPDAQNALQVRPADLHTERENKLFVGMLPKNVDEGLVEGLFAPFGKIKEIHIIRSVEGEGKGCAFLKFVERSSAIQAIEALNERQVVEGASRPMVVRFAESKRSGEGG 209
BLAST of NO05G02950 vs. NCBI_GenBank
Match: CBJ31866.1 (trinucleotide repeat containing 4, isoform CRA_d [Ectocarpus siliculosus]) HSP 1 Score: 231.1 bits (588), Expect = 3.500e-57 Identity = 111/177 (62.71%), Postives = 136/177 (76.84%), Query Frame = 0 Query: 25 KDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPADMHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTPEGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKRST 202 KD DA+KLFVGQIPK + EE LRPVF EFG IF+L VIRDK +G HRGCAFLTYC + +ADAA AALH Q RL QN LQVRPA+ AE+ENKLFVGM PK+ ++ + +FAPYG ++E+H+IR +G KGCAF+K+ + SAL AIE L+E+ ++G RPLVVKFADNKR T Sbjct: 39 KDSDAIKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAALHGQRRLDRGQNPLQVRPAEGQAEQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGT 215
BLAST of NO05G02950 vs. NCBI_GenBank
Match: OQS06212.1 (CUG-BP- and ETR-3-like factor [Thraustotheca clavata]) HSP 1 Score: 196.4 bits (498), Expect = 9.500e-47 Identity = 96/181 (53.04%), Postives = 131/181 (72.38%), Query Frame = 0 Query: 22 GPTKDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 G + DAVKLFVGQ+P+ + E LRP+ FGP++++ +IRDK +GAHRGCAF+T+CT+ AADAA LHNQ LP + N LQVRPA+ A +E+KLF+GM+PK D+A + +FAP+G I+E++I+R P G+ KGCAFLK+ D+ SA AIE N ++ T PLVVKFAD++R Sbjct: 28 GHVQPPDAVKLFVGQVPRSMEEADLRPILEAFGPLYDIVIIRDKVSGAHRGCAFVTFCTRDAADAAIETLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADEASIREVFAPHGAIEEIYILRHPATGQSKGCAFLKYKDRHSASSAIEAFNGIYTMDRGTAPLVVKFADSRR 208
BLAST of NO05G02950 vs. NCBI_GenBank
Match: OQR99335.1 (CUG-BP- and ETR-3-like factor [Achlya hypogyna]) HSP 1 Score: 195.7 bits (496), Expect = 1.600e-46 Identity = 94/175 (53.71%), Postives = 129/175 (73.71%), Query Frame = 0 Query: 28 DAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 DAVKLFVGQ+P+ + E LRP+ FGP++++ +IRDK +G HRGCAF+T+CT+AAA+AA LHNQ LP + N LQVRPA+ A +E+KLF+GM+PK D++ + +FAP+G I+E++I+R P G+ KGCAFLKF D+ SA AIE N ++ T PLVVKFAD++R Sbjct: 90 DAVKLFVGQVPRTMEEADLRPILEAFGPLYDIVIIRDKVSGTHRGCAFVTFCTRAAAEAAIETLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADESSIREVFAPHGAIEEIYILRHPATGQSKGCAFLKFKDRHSASTAIEAFNGTYTMDRGTAPLVVKFADSRR 264
BLAST of NO05G02950 vs. NCBI_GenBank
Match: XP_012196612.1 (hypothetical protein SPRG_02658 [Saprolegnia parasitica CBS 223.65] >KDO32966.1 hypothetical protein SPRG_02658 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 191.4 bits (485), Expect = 3.100e-45 Identity = 92/181 (50.83%), Postives = 132/181 (72.93%), Query Frame = 0 Query: 22 GPTKDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 G ++ DAVKLFVGQ+P+++ E ALRP+ FGP++++ +IRDK +G HRGCAF+T+C++ AADAA LHNQ LP + N LQVRPA+ A +E+KLF+GM+PK D++ + +FA +G I+E++I+R P G+ KGCAFLK+ D+ +A AI+ N +E T PLVVKFAD++R Sbjct: 31 GHSQPPDAVKLFVGQVPRNMEEAALRPILEAFGPLYDIVIIRDKVSGTHRGCAFVTFCSRDAADAAIETLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADESSIREVFASHGPIEEIYILRHPATGQSKGCAFLKYKDRHAASAAIDAYNGTYTMERGTAPLVVKFADSRR 211
BLAST of NO05G02950 vs. NCBI_GenBank
Match: XP_008874599.1 (hypothetical protein H310_10113 [Aphanomyces invadans] >ETV96822.1 hypothetical protein H310_10113 [Aphanomyces invadans]) HSP 1 Score: 191.0 bits (484), Expect = 4.000e-45 Identity = 93/185 (50.27%), Postives = 133/185 (71.89%), Query Frame = 0 Query: 18 SAKTGPTKDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 S G + DAVKLFVGQ+P+ + E+ LRP+ FGP++++ +IRDK +GAHRGCAF+TYC++ AA+AA LHNQ LP++ N LQVRPA+ A +E+KLF+GM+PK D+A + +F +G I+E++I+R P G+ KGCAFLKF D+ +A AI+ +N ++ T PLVVKFAD++R Sbjct: 30 SGHHGHAQPQDAVKLFVGQVPRTMDEDELRPILERFGPLYDIVIIRDKISGAHRGCAFVTYCSRNAAEAAIDTLHNQVTLPSSPNPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRSVFQVHGDIEEIYILRHPGTGQSKGCAFLKFKDRHAASTAIDTINGAVTMDRGTAPLVVKFADSRR 214
BLAST of NO05G02950 vs. NCBI_GenBank
Match: XP_009841215.1 (hypothetical protein H257_14965 [Aphanomyces astaci] >ETV69358.1 hypothetical protein H257_14965 [Aphanomyces astaci]) HSP 1 Score: 189.9 bits (481), Expect = 8.900e-45 Identity = 92/175 (52.57%), Postives = 130/175 (74.29%), Query Frame = 0 Query: 28 DAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 DAVKLFVGQ+P+ + E+ LRP+ FGP++++ +IRDK +GAHRGCAF+TYCT+ AA+AA LHNQ LP + N LQVRPA+ A +E+KLF+GM+PK D+A + +F +G+I+E++I+R P G+ KGCAFLKF D+ +A AI+ +N ++ T PLVVKFAD++R Sbjct: 41 DAVKLFVGQVPRTMDEDELRPILENFGPLYDIVIIRDKISGAHRGCAFVTYCTRDAAEAAIDTLHNQVTLPMSPNPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRGVFDVHGEIEEIYILRHPGTGQSKGCAFLKFKDRHAASAAIDTINGAITMDRGTAPLVVKFADSRR 215
BLAST of NO05G02950 vs. NCBI_GenBank
Match: XP_009841216.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV69359.1 hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 189.9 bits (481), Expect = 8.900e-45 Identity = 92/175 (52.57%), Postives = 130/175 (74.29%), Query Frame = 0 Query: 28 DAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 DAVKLFVGQ+P+ + E+ LRP+ FGP++++ +IRDK +GAHRGCAF+TYCT+ AA+AA LHNQ LP + N LQVRPA+ A +E+KLF+GM+PK D+A + +F +G+I+E++I+R P G+ KGCAFLKF D+ +A AI+ +N ++ T PLVVKFAD++R Sbjct: 41 DAVKLFVGQVPRTMDEDELRPILENFGPLYDIVIIRDKISGAHRGCAFVTYCTRDAAEAAIDTLHNQVTLPMSPNPLQVRPAEGQAGASQEHKLFIGMIPKHADEADIRGVFDVHGEIEEIYILRHPGTGQSKGCAFLKFKDRHAASAAIDTINGAITMDRGTAPLVVKFADSRR 215
BLAST of NO05G02950 vs. NCBI_GenBank
Match: XP_008903818.1 (hypothetical protein PPTG_09784 [Phytophthora parasitica INRA-310] >ETI48822.1 hypothetical protein F443_07190 [Phytophthora parasitica P1569] >ETK88706.1 hypothetical protein L915_07074 [Phytophthora parasitica] >ETL42100.1 hypothetical protein L916_07025 [Phytophthora parasitica] >ETL95256.1 hypothetical protein L917_06911 [Phytophthora parasitica] >ETM48468.1 hypothetical protein L914_06990 [Phytophthora parasitica] >ETN10689.1 hypothetical protein PPTG_09784 [Phytophthora parasitica INRA-310] >ETO77552.1 hypothetical protein F444_07263 [Phytophthora parasitica P1976] >ETP18583.1 hypothetical protein F441_07209 [Phytophthora parasitica CJ01A1] >ETP46500.1 hypothetical protein F442_07258 [Phytophthora parasitica P10297] >KUF78787.1 CUGBP Elav family member 6 [Phytophthora nicotianae]) HSP 1 Score: 189.5 bits (480), Expect = 1.200e-44 Identity = 102/200 (51.00%), Postives = 143/200 (71.50%), Query Frame = 0 Query: 6 EAQSATTDPT-SPSAK--TGPTKDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 + ++A+ DP+ SP+A+ P + + VKLFVGQ+P+ + E+ LRPV FGP+ +L +IRDK TGAHRGCAF +Y T+ AA+ A LHN+ LP + N LQVRPA+ A +E+KLF+GM+PKT D+A + +F +G I+EV+I+R P G+ KGCAFLKF ++SSAL AIEE+N ++ T PLVVKFAD++R Sbjct: 7 DPEAASADPSVSPNAEGYGDPQQHNGPVKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAGASQEHKLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGNVTMDRGTSPLVVKFADSRR 206
BLAST of NO05G02950 vs. NCBI_GenBank
Match: XP_002899202.1 (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >EEY62171.1 CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4]) HSP 1 Score: 187.6 bits (475), Expect = 4.400e-44 Identity = 100/198 (50.51%), Postives = 139/198 (70.20%), Query Frame = 0 Query: 6 EAQSATTDPT-SPSAKTGPTKDDDAVKLFVGQIPKDIVEEALRPVFAEFGPIFELTVIRDKSTGAHRGCAFLTYCTKAAADAASAALHNQYRLPNAQNALQVRPAD--MHAERENKLFVGMLPKTVDDAMLELLFAPYGKIKEVHIIRTP-EGEGKGCAFLKFMDKSSALRAIEELNERQAVEGSTRPLVVKFADNKR 200 + + A+ DP+ + A P + + VKLFVGQ+P+ + E+ LRPV FGP+ +L +IRDK TGAHRGCAF +Y T+ AA+ A LHN+ LP + N LQVRPA+ A +E+KLF+GM+PKT D+A + +F +G I+EV+I+R P G+ KGCAFLKF ++SSAL AIEE+N ++ T PLVVKFAD++R Sbjct: 7 DMEGASVDPSVNVDAYADPQQHNGPVKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAGASQEHKLFIGMIPKTADEAAIRDVFELFGSIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGIVTMDRGTSPLVVKFADSRR 204 The following BLAST results are available for this feature:
BLAST of NO05G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO05G02950 ID=NO05G02950|Name=NO05G02950|organism=Nannochloropsis oceanica|type=gene|length=1862bpback to top protein sequence of NO05G02950.1 >NO05G02950.1-protein ID=NO05G02950.1-protein|Name=NO05G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bpback to top Synonyms
Publications
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