NO05G02940, NO05G02940 (gene) Nannochloropsis oceanica

Overview
NameNO05G02940
Unique NameNO05G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length890
Alignment locationchr5:770562..771451 -

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Properties
Property NameValue
Description30s ribosomal protein s9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:770562..771451 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR000754Ribosomal_S9
Homology
BLAST of NO05G02940 vs. NCBI_GenBank
Match: EWM28115.1 (30s ribosomal protein s9 [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 3.600e-61
Identity = 137/208 (65.87%), Postives = 154/208 (74.04%), Query Frame = 0
Query:    4 MLTWASSRIQQLVRVPAAVSVVQTSTTTCTNIPTVAQRFSTAAVEPSTAPEDSAALPLPDADATVDGSSLPPSLNPRLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            ML    S + +L  +  + ++    T T T     A+RFST+   P  A  D  +  + DA A+      PP LNPRLD+LNRAYATGRRKTSVARVWL AG G I VNGKEV+EYFGR AYRDKL+EPFVVT + G FDV CTVKGGGTTGQVGA++LGISRALEVWD AHRPPLAKESLFTRDSRAVE KK GQPKARKKDQWVKR
Sbjct:   12 MLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTST--PLAAEGDDPSAAVNDAHAS------PPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: PCI98432.1 (30S ribosomal protein S9 [Alphaproteobacteria bacterium])

HSP 1 Score: 156.0 bits (393), Expect = 1.300e-34
Identity = 82/151 (54.30%), Postives = 102/151 (67.55%), Query Frame = 0
Query:   62 PDADATVDGS-SLPPSLNPRLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            P AD T D   + P    P++D L R+YATGRRK +VARVW+KAG G + VNG++  +YF R  +R  L +PF+VT   G FDV+CTVKGGG +G  GAV  GISRALE ++   RPPL K  + TRD R VERKK G+ KAR+  QW KR
Sbjct:   27 PAADKTEDAEVTAPVKKEPKIDKLGRSYATGRRKDAVARVWIKAGSGKVTVNGRDQADYFTRTTHRLILNQPFLVTDRVGQFDVICTVKGGGLSGHAGAVRHGISRALENFEPTLRPPLKKAGMMTRDDRIVERKKVGKHKARRTKQWAKR 177          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: PCJ99807.1 (30S ribosomal protein S9 [Zetaproteobacteria bacterium])

HSP 1 Score: 153.3 bits (386), Expect = 8.500e-34
Identity = 83/150 (55.33%), Postives = 100/150 (66.67%), Query Frame = 0
Query:   62 PDADATVDGSSLPPSLNPRLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            P A    +  S P    P++D L RAYATGRRK +VARVW+KAG G + VNGK+  EYF R  +R  L +PF+VT   G FDVMCTVKGGG +G  GAV  GISRALE ++   RPPL K  + TRD R VERKK G+ KAR+  Q+ KR
Sbjct:   27 PVAAKAEEVESAPVKKEPKIDNLGRAYATGRRKDAVARVWIKAGSGKVTVNGKDQTEYFTRTTHRLILNQPFLVTDRVGKFDVMCTVKGGGLSGHAGAVRHGISRALENFEPTLRPPLKKAGMMTRDDRIVERKKVGKHKARRTKQFSKR 176          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: KZV41030.1 (hypothetical protein F511_14006 [Dorcoceras hygrometricum])

HSP 1 Score: 152.1 bits (383), Expect = 1.900e-33
Identity = 77/132 (58.33%), Postives = 93/132 (70.45%), Query Frame = 0
Query:   80 RLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            ++DA  RAY TG+RK S+ARVW+  G+G   VN KE   YF  + +R  L+ PF  T T G +DV CTVKGGGT+GQVGA+ LGISRAL+ W+   RPPL +    TRDSR VERKKPG+ KARK  QWVKR
Sbjct:  320 QVDAKGRAYGTGKRKCSIARVWISPGEGKFIVNDKEFDVYFPMLDHRAALLRPFSETKTLGMWDVSCTVKGGGTSGQVGAIRLGISRALQNWEPGFRPPLKEAGFLTRDSRVVERKKPGKAKARKSFQWVKR 451          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: OWY98245.1 (Mitochondrial/chloroplast ribosomal protein S9 [Phytophthora megakarya])

HSP 1 Score: 151.4 bits (381), Expect = 3.200e-33
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 0
Query:   81 LDALNRAYATGRRKTSVARVWLKAG----QGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            LD+  RAY TGRRKTSVARVW+K       G ++VN K++ +YF R  +R+++++PF V    G FDV CTVKGGG TGQ GAV  GI+RAL+ +D   RP L KE L TRD R VERKKPGQ KARKK QWVKR
Sbjct:  186 LDSKGRAYGTGRRKTSVARVWVKPAAQPFTGRVQVNKKDLVDYFVRDTHREEVLKPFSVVEQIGGFDVYCTVKGGGMTGQAGAVRHGIARALQAFDPELRPALKKEGLLTRDPRMVERKKPGQAKARKKFQWVKR 320          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: CCI42359.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 151.0 bits (380), Expect = 4.200e-33
Identity = 78/136 (57.35%), Postives = 97/136 (71.32%), Query Frame = 0
Query:   80 RLDALNRAYATGRRKTSVARVWLKAG----QGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            ++D L RAY TGRRKTS ARVW+K      +G +RVN K+V +YF R + R+ ++ PFV     G FDVMC V+GGG +GQ GA+  GISRAL+ +D ++RP L +E   TRD R VERKKPGQPKARKK QWVKR
Sbjct:  100 QVDDLGRAYGTGRRKTSTARVWIKKSSTPFRGVVRVNKKDVVDYFVRDSNREHVLSPFVAVDQVGHFDVMCNVRGGGLSGQAGAIRHGISRALQNFDPSYRPLLKEEGYLTRDPRMVERKKPGQPKARKKYQWVKR 235          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: CCA17820.1 (30S ribosomal protein S9 putative [Albugo laibachii Nc14])

HSP 1 Score: 150.6 bits (379), Expect = 5.500e-33
Identity = 81/152 (53.29%), Postives = 103/152 (67.76%), Query Frame = 0
Query:   65 DATVDGSSLPPSLNPR-LDALNRAYATGRRKTSVARVWLKAG----QGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            D     S+ P  +  R +D   RAY TGRRKTS ARVW+K      +G +RVN K++ +YF R + R++++ PFVV    G FDVMC V+GGG +GQ GA+  GISRAL+ +D ++RP L +E   TRD R VERKKPGQPKARKK QWVKR
Sbjct:  150 DCEKSASAEPKIIRTRQVDESGRAYGTGRRKTSTARVWIKKSSTPFRGVVRVNKKDIVDYFVRDSNREEVLSPFVVVDQVGHFDVMCNVRGGGLSGQAGAIRHGISRALQNFDPSYRPLLKQEGYLTRDPRMVERKKPGQPKARKKYQWVKR 301          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: WP_092860563.1 (30S ribosomal protein S9 [Albimonas pacifica] >SFI39817.1 SSU ribosomal protein S9P [Albimonas pacifica])

HSP 1 Score: 150.6 bits (379), Expect = 5.500e-33
Identity = 84/152 (55.26%), Postives = 102/152 (67.11%), Query Frame = 0
Query:   64 ADATVDG--SSLPPSL--NPRLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            AD TVDG  +S+ P+    P  DALNR+YATG+RK +V+RVW+K G G I VNGKE   YF R   +  + +PF V G  G FDVMCTVKGGG +GQ GAV  GIS+AL +WD + RP L      TRDSR VERKK G+ KAR+  Q+ KR
Sbjct:   12 ADLTVDGDATSIEPAAPREPVRDALNRSYATGKRKDAVSRVWVKPGTGKITVNGKEADAYFARPVLQMVIAQPFGVAGVDGQFDVMCTVKGGGLSGQAGAVKHGISKALTLWDPSLRPALKAAGFLTRDSRVVERKKYGRRKARRSFQFSKR 163          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: PKA63731.1 (hypothetical protein AXF42_Ash017015 [Apostasia shenzhenica])

HSP 1 Score: 150.6 bits (379), Expect = 5.500e-33
Identity = 77/132 (58.33%), Postives = 92/132 (69.70%), Query Frame = 0
Query:   80 RLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            ++D   RAY TGRRK SVARVW++ G+G   VN KE   YF  + +R  L++PF +T T G +DV CTVKGGG +GQVGAV LGISRAL+ W+   RP L      TRDSR VERKKPG+ KARK  QWVKR
Sbjct:  292 KVDEKGRAYGTGRRKCSVARVWIQPGEGRFMVNDKEFDAYFPILDHRADLLQPFTITNTLGLWDVTCTVKGGGVSGQVGAVRLGISRALQHWEPGLRPYLKSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 423          
BLAST of NO05G02940 vs. NCBI_GenBank
Match: XP_019155536.1 (PREDICTED: 37S ribosomal protein S9, mitochondrial [Ipomoea nil])

HSP 1 Score: 149.8 bits (377), Expect = 9.300e-33
Identity = 76/132 (57.58%), Postives = 91/132 (68.94%), Query Frame = 0
Query:   80 RLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            ++D   R+Y TGRRK S+ARVW++ G G   VN KE   YF  + +R  L+ PF  T T G +DV CTVKGGG +GQVGA+ LG+SRAL+ WD   RPPL K    TRDSR VERKKPG+ KARK  QWVKR
Sbjct:  267 QVDEKGRSYGTGRRKCSIARVWIEPGDGKFVVNDKEFDVYFPMLDHRANLLRPFSETKTLGMWDVKCTVKGGGVSGQVGAIQLGVSRALQKWDPELRPPLRKGGFLTRDSRVVERKKPGRAKARKSFQWVKR 398          
The following BLAST results are available for this feature:
BLAST of NO05G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28115.13.600e-6165.8730s ribosomal protein s9 [Nannochloropsis gaditana... [more]
PCI98432.11.300e-3454.3030S ribosomal protein S9 [Alphaproteobacteria bact... [more]
PCJ99807.18.500e-3455.3330S ribosomal protein S9 [Zetaproteobacteria bacte... [more]
KZV41030.11.900e-3358.33hypothetical protein F511_14006 [Dorcoceras hygrom... [more]
OWY98245.13.200e-3359.26Mitochondrial/chloroplast ribosomal protein S9 [Ph... [more]
CCI42359.14.200e-3357.35unnamed protein product [Albugo candida][more]
CCA17820.15.500e-3353.2930S ribosomal protein S9 putative [Albugo laibachi... [more]
WP_092860563.15.500e-3355.2630S ribosomal protein S9 [Albimonas pacifica] >SFI... [more]
PKA63731.15.500e-3358.33hypothetical protein AXF42_Ash017015 [Apostasia sh... [more]
XP_019155536.19.300e-3357.58PREDICTED: 37S ribosomal protein S9, mitochondrial... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL085nonsL085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR092ncniR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR117ngnoR117Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK003571NSK003571Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO05G02940.1NO05G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584568gene_3101Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100036g8gene2461Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO05G02940.1NO05G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO05G02940 ID=NO05G02940|Name=NO05G02940|organism=Nannochloropsis oceanica|type=gene|length=890bp
ATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGCTTGTCCG
GGTCCCGGCAGCAGTGTCGGTGGTTCAGgtaagaaggtttttggtggaac
gtggtagatgcactcaggaaaggaggtggtgataatgcgccgccgctgag
tgaaagcgctgcgttagagagaggcatccctcgatgcccctgtgcctcag
ttgggtttcttggaatgtgtgtggcaagggagcatagagaggcttccttt
ccagcaagtcgtcccatctctctgaagtgtgaagccacaactcataccaa
cttacctcgccacccactttttcttgacgtagACTTCCACAACCACTTGC
ACCAACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCGTCGAGCC
TTCAACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCCTGATGCTGATG
CCACTGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCGCCTGGAC
GCCTTGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCGTGGCACG
AGTGTGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGAAAGGAAG
TCTATGAGTACTTCGGGCGGGTCGCGTACAGGGACAAGTTGGTGGAGCCC
TTTGTGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCACGGTGAA
GGGAGGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGGATCTCGA
GGGCGTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGCGAAAGAA
AGTCTGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGCCAGGGCA
GCCCAAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAG
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protein sequence of NO05G02940.1

>NO05G02940.1-protein ID=NO05G02940.1-protein|Name=NO05G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MAAMLTWASSRIQQLVRVPAAVSVVQTSTTTCTNIPTVAQRFSTAAVEPS
TAPEDSAALPLPDADATVDGSSLPPSLNPRLDALNRAYATGRRKTSVARV
WLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKG
GGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQP
KARKKDQWVKR*
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Synonyms
Publications